Wall clock time and date at job start Sun Mar 29 2020 21:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38256 * 119.99792 * 2 1 4 4 C 1.38212 * 120.00058 * 180.02562 * 3 2 1 5 5 C 1.38259 * 120.00080 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00214 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.46946 * 90.00391 * 6 5 4 8 8 C 1.52997 * 109.46947 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47238 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99883 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00043 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47293 * 89.99746 * 13 11 9 15 15 H 1.48504 * 109.47104 * 209.99992 * 13 11 9 16 16 H 1.48495 * 109.47249 * 329.99739 * 13 11 9 17 17 C 1.38218 * 119.99760 * 0.25783 * 5 4 3 18 18 C 1.38212 * 120.00041 * 180.02562 * 2 1 3 19 19 C 1.50693 * 119.99926 * 359.97438 * 18 2 1 20 20 H 1.09001 * 109.47310 * 90.00081 * 1 2 3 21 21 H 1.09000 * 109.47217 * 210.00140 * 1 2 3 22 22 H 1.09003 * 109.47321 * 330.00135 * 1 2 3 23 23 H 1.08000 * 120.00419 * 0.02562 * 3 2 1 24 24 H 1.07999 * 120.00485 * 179.97438 * 4 3 2 25 25 H 1.08992 * 109.46894 * 330.00110 * 6 5 4 26 26 H 1.08996 * 109.46805 * 210.00260 * 6 5 4 27 27 H 1.09001 * 109.47372 * 60.00128 * 7 6 5 28 28 H 1.09004 * 109.47108 * 299.99872 * 7 6 5 29 29 H 1.09001 * 109.46832 * 59.99979 * 8 7 6 30 30 H 1.09000 * 109.47611 * 300.00276 * 8 7 6 31 31 H 0.97004 * 119.99507 * 180.02562 * 12 11 9 32 32 H 1.07998 * 120.00075 * 179.72219 * 17 5 4 33 33 H 1.08999 * 109.47317 * 90.00862 * 19 18 2 34 34 H 1.09003 * 109.47307 * 210.00041 * 19 18 2 35 35 H 1.08994 * 109.47461 * 330.00183 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 5.7787 0.0001 -0.0017 7 6 6.2898 0.0007 1.4404 8 6 7.8198 0.0001 1.4392 9 6 8.3233 0.0013 2.8597 10 1 7.6220 0.0019 3.6810 11 6 9.6789 0.0015 3.1106 12 7 10.5328 0.0012 2.1102 13 14 10.3030 0.0023 4.8712 14 1 10.4684 -1.3976 5.3384 15 1 11.6111 0.7025 4.9325 16 1 9.3255 0.7026 5.7426 17 6 3.5806 -1.1969 -0.0054 18 6 2.1980 -1.1969 -0.0005 19 6 1.4446 -2.5020 -0.0005 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 1.6583 2.1327 0.0004 24 1 4.1204 2.1327 -0.0010 25 1 6.1416 0.8899 -0.5162 26 1 6.1416 -0.8900 -0.5155 27 1 5.9269 -0.8891 1.9549 28 1 5.9268 0.8909 1.9542 29 1 8.1830 0.8897 0.9246 30 1 8.1824 -0.8903 0.9255 31 1 11.4866 0.0010 2.2868 32 1 4.1206 -2.1322 -0.0099 33 1 1.2626 -2.8165 -1.0282 34 1 2.0338 -3.2618 0.5129 35 1 0.4924 -2.3718 0.5136 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082530051.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:45 Heat of formation + Delta-G solvation = -30.582255 kcal Electronic energy + Delta-G solvation = -13803.273973 eV Core-core repulsion = 11570.883540 eV Total energy + Delta-G solvation = -2232.390433 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 218.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.56878 -36.80072 -35.01124 -33.36832 -32.74453 -29.75420 -28.07874 -26.83343 -24.66704 -22.95013 -22.11521 -20.76191 -18.47743 -16.87194 -16.72585 -16.47871 -15.65226 -15.44335 -15.11749 -14.50964 -14.17105 -13.94707 -13.63973 -13.54509 -13.53684 -13.02127 -12.88150 -12.71431 -12.54790 -12.45649 -12.15567 -11.88565 -11.76248 -11.44551 -11.32312 -11.06553 -10.56651 -9.60354 -9.22528 -8.21056 -6.32771 0.47493 0.52043 1.38699 1.40466 1.51779 2.40164 2.84185 3.11491 3.88036 3.92114 4.07104 4.18364 4.23689 4.41383 4.52796 4.55776 4.69925 4.75833 4.82180 4.87921 4.91394 4.95781 5.07540 5.10482 5.19178 5.21911 5.32554 5.44164 5.50951 5.60556 5.69314 5.78951 5.84123 5.85780 6.20291 6.25421 6.83661 7.36493 8.90705 Molecular weight = 218.14amu Principal moments of inertia in cm(-1) A = 0.049305 B = 0.004811 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.751827 B = 5818.244724 C = 5877.938614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.107 4.107 3 C -0.120 4.120 4 C -0.136 4.136 5 C -0.089 4.089 6 C -0.074 4.074 7 C -0.087 4.087 8 C 0.023 3.977 9 C -0.546 4.546 10 H 0.057 0.943 11 C 0.000 4.000 12 N -0.933 5.933 13 Si 0.966 3.034 14 H -0.271 1.271 15 H -0.279 1.279 16 H -0.264 1.264 17 C -0.133 4.133 18 C -0.095 4.095 19 C -0.114 4.114 20 H 0.079 0.921 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.141 0.859 24 H 0.122 0.878 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.045 0.955 28 H 0.046 0.954 29 H -0.007 1.007 30 H -0.007 1.007 31 H 0.264 0.736 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.172 -1.217 -4.747 20.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.107 4.107 3 C -0.138 4.138 4 C -0.154 4.154 5 C -0.089 4.089 6 C -0.112 4.112 7 C -0.124 4.124 8 C -0.014 4.014 9 C -0.584 4.584 10 H 0.075 0.925 11 C -0.198 4.198 12 N -0.574 5.574 13 Si 0.790 3.210 14 H -0.196 1.196 15 H -0.205 1.205 16 H -0.189 1.189 17 C -0.151 4.151 18 C -0.095 4.095 19 C -0.170 4.170 20 H 0.098 0.902 21 H 0.098 0.902 22 H 0.092 0.908 23 H 0.159 0.841 24 H 0.140 0.860 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.011 0.989 30 H 0.011 0.989 31 H 0.073 0.927 32 H 0.138 0.862 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.002 -1.217 -4.788 20.603 hybrid contribution 1.152 0.102 0.665 1.334 sum -18.850 -1.115 -4.123 19.327 Atomic orbital electron populations 1.20868 0.89077 1.03680 1.03094 1.20121 0.97605 0.92262 1.00700 1.21262 0.93564 0.98621 1.00374 1.21202 0.95041 0.97537 1.01659 1.20022 0.95349 0.94038 0.99447 1.20579 0.91034 1.02267 0.97277 1.21373 0.95890 1.00140 0.95019 1.19042 0.91893 0.94903 0.95553 1.21703 0.92281 1.50704 0.93722 0.92503 1.25992 0.97249 0.94611 1.01927 1.70102 1.02468 1.51633 1.33148 0.85436 0.77733 0.78593 0.79229 1.19627 1.20471 1.18865 1.21095 0.94374 0.97528 1.02067 1.20081 0.93174 0.96491 0.99795 1.20888 1.00299 0.92691 1.03111 0.90238 0.90227 0.90834 0.84123 0.85957 0.91579 0.91680 0.93605 0.93550 0.98867 0.98892 0.92695 0.86211 0.90162 0.91649 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 9.60 71.24 0.68 -0.99 16 2 C -0.11 -2.45 5.88 -19.87 -0.12 -2.57 16 3 C -0.12 -2.96 9.70 22.27 0.22 -2.75 16 4 C -0.14 -4.02 9.70 22.27 0.22 -3.80 16 5 C -0.09 -2.89 5.13 -19.86 -0.10 -2.99 16 6 C -0.07 -2.75 5.35 29.85 0.16 -2.59 16 7 C -0.09 -3.84 5.13 30.59 0.16 -3.68 16 8 C 0.02 1.28 4.97 29.85 0.15 1.43 16 9 C -0.55 -32.39 9.11 25.60 0.23 -32.16 16 10 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 11 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 12 N -0.93 -58.09 13.29 21.45 0.28 -57.80 16 13 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 15 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 16 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 17 C -0.13 -3.95 9.36 22.27 0.21 -3.74 16 18 C -0.10 -2.37 5.88 -19.87 -0.12 -2.48 16 19 C -0.11 -2.02 9.60 71.23 0.68 -1.33 16 20 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 21 H 0.08 1.02 5.95 -2.39 -0.01 1.00 16 22 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 23 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 24 H 0.12 3.41 8.06 -2.91 -0.02 3.39 16 25 H 0.07 2.40 8.08 -2.39 -0.02 2.38 16 26 H 0.06 2.37 8.08 -2.39 -0.02 2.35 16 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 29 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 31 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 32 H 0.12 3.43 8.06 -2.91 -0.02 3.41 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.16 8.09 -2.39 -0.02 1.14 16 35 H 0.08 1.20 5.95 -2.39 -0.01 1.19 16 Total: -1.00 -66.94 292.34 6.18 -60.76 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 1.04 Total: 6.95 kcal Atomic # 6 Polarization: -60.04 SS G_CDS: 2.83 Total: -57.20 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 0.28 Total: -57.80 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -66.94 6.18 -60.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082530051.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.173 kcal (2) G-P(sol) polarization free energy of solvation -66.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds