Wall clock time and date at job start Sun Mar 29 2020 21:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46663 * 2 1 4 4 C 1.53187 * 109.46350 * 240.01910 * 2 1 3 5 5 S 1.81698 * 109.03215 * 181.79098 * 4 2 1 6 6 O 1.42100 * 108.57879 * 301.10612 * 5 4 2 7 7 O 1.42102 * 108.73262 * 169.79737 * 5 4 2 8 8 C 1.81669 * 101.37461 * 55.42337 * 5 4 2 9 9 C 1.53183 * 109.03647 * 304.57289 * 8 5 4 10 10 N 1.46384 * 109.50791 * 58.20779 * 9 8 5 11 11 C 1.36943 * 119.70116 * 115.67589 * 10 9 8 12 12 H 1.07997 * 119.99776 * 149.54074 * 11 10 9 13 13 C 1.38808 * 119.99776 * 329.55486 * 11 10 9 14 14 N 1.31623 * 120.00128 * 342.87729 * 13 11 10 15 15 Si 1.86799 * 119.99778 * 162.88843 * 13 11 10 16 16 H 1.48494 * 109.47473 * 89.99731 * 15 13 11 17 17 H 1.48504 * 109.46801 * 209.99458 * 15 13 11 18 18 H 1.48497 * 109.47060 * 329.99074 * 15 13 11 19 19 H 1.08998 * 109.47300 * 300.01835 * 1 2 3 20 20 H 1.08997 * 109.46847 * 60.01793 * 1 2 3 21 21 H 1.08996 * 109.47096 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.55715 * 301.57474 * 4 2 1 23 23 H 1.08995 * 109.55620 * 61.78971 * 4 2 1 24 24 H 1.09005 * 109.55044 * 184.68496 * 8 5 4 25 25 H 1.08996 * 109.56054 * 64.47408 * 8 5 4 26 26 H 1.09004 * 109.46196 * 178.21670 * 9 8 5 27 27 H 1.08992 * 109.46964 * 298.20308 * 9 8 5 28 28 H 0.96996 * 119.99790 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0404 -0.7217 -1.2511 5 16 3.8565 -0.7616 -1.2126 6 8 4.3377 0.5746 -1.1624 7 8 4.3158 -1.6293 -2.2400 8 6 4.1637 -1.5505 0.3947 9 6 3.4507 -0.7497 1.4887 10 7 2.0178 -0.6897 1.1955 11 6 1.1255 -1.2848 2.0470 12 1 0.1312 -0.8781 2.1576 13 6 1.4992 -2.4104 2.7682 14 7 2.5574 -3.1036 2.4046 15 14 0.5001 -2.9416 4.2545 16 1 -0.5689 -3.8777 3.8235 17 1 1.3889 -3.6210 5.2311 18 1 -0.1136 -1.7482 4.8905 19 1 -0.3634 0.5141 0.8898 20 1 -0.3633 0.5135 -0.8901 21 1 -0.3633 -1.0276 0.0005 22 1 1.6549 -1.7411 -1.2670 23 1 1.7042 -0.1905 -2.1414 24 1 5.2352 -1.5670 0.5942 25 1 3.7796 -2.5704 0.3800 26 1 3.6043 -1.2351 2.4526 27 1 3.8571 0.2611 1.5223 28 1 2.8183 -3.8904 2.9084 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218969448.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:11 Heat of formation + Delta-G solvation = -69.551552 kcal Electronic energy + Delta-G solvation = -14044.501892 eV Core-core repulsion = 11608.773475 eV Total energy + Delta-G solvation = -2435.728417 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 219.072 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.97234 -37.82201 -36.98175 -34.49952 -33.02545 -30.57615 -28.29766 -26.12206 -23.83793 -21.59498 -19.75077 -18.48822 -17.54033 -17.12561 -16.79325 -16.50967 -16.02040 -15.42563 -15.14938 -14.00072 -13.72636 -13.51398 -13.28623 -13.07256 -13.00158 -12.95445 -12.71802 -12.63470 -12.39150 -12.08479 -11.91845 -11.83185 -11.24624 -10.87315 -10.48836 -8.79387 -7.89094 -5.38554 -0.69516 1.49875 1.54863 1.61277 1.90182 2.51422 2.80644 3.16557 3.34972 3.40200 3.88061 4.14987 4.25029 4.42054 4.47185 4.72239 4.72344 4.89127 5.08251 5.28036 5.40375 5.53592 5.58209 5.78065 6.40767 7.11903 7.78367 8.23571 9.16806 Molecular weight = 219.07amu Principal moments of inertia in cm(-1) A = 0.043074 B = 0.011807 C = 0.010338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.888954 B = 2370.921336 C = 2707.839536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.168 3.832 3 H 0.068 0.932 4 C -0.603 4.603 5 S 2.424 3.576 6 O -0.978 6.978 7 O -0.994 6.994 8 C -0.588 4.588 9 C 0.174 3.826 10 N -0.608 5.608 11 C -0.264 4.264 12 H 0.082 0.918 13 C -0.038 4.038 14 N -0.921 5.921 15 Si 0.959 3.041 16 H -0.288 1.288 17 H -0.298 1.298 18 H -0.273 1.273 19 H 0.057 0.943 20 H 0.078 0.922 21 H 0.051 0.949 22 H 0.128 0.872 23 H 0.154 0.846 24 H 0.129 0.871 25 H 0.133 0.867 26 H 0.082 0.918 27 H 0.043 0.957 28 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.773 4.207 -3.674 5.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.061 3.939 3 H 0.085 0.915 4 C -0.738 4.738 5 S 2.613 3.387 6 O -0.975 6.975 7 O -0.991 6.991 8 C -0.722 4.722 9 C 0.047 3.953 10 N -0.330 5.330 11 C -0.394 4.394 12 H 0.100 0.900 13 C -0.235 4.235 14 N -0.566 5.566 15 Si 0.788 3.212 16 H -0.215 1.215 17 H -0.225 1.225 18 H -0.198 1.198 19 H 0.076 0.924 20 H 0.096 0.904 21 H 0.070 0.930 22 H 0.147 0.853 23 H 0.172 0.828 24 H 0.148 0.852 25 H 0.151 0.849 26 H 0.100 0.900 27 H 0.061 0.939 28 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.064 4.393 -4.260 6.211 hybrid contribution -0.675 -1.183 1.319 1.896 sum -1.739 3.210 -2.942 4.689 Atomic orbital electron populations 1.21752 0.92821 1.02092 1.01838 1.20535 0.96877 0.94157 0.82381 0.91473 1.30587 1.22814 1.11408 1.08986 1.07377 0.79413 0.74595 0.77327 1.93470 1.79806 1.36693 1.87578 1.93473 1.80779 1.68482 1.56411 1.30335 1.09338 1.13870 1.18698 1.20362 0.82263 0.94931 0.97745 1.44516 1.02366 1.62898 1.23249 1.19505 0.97054 1.05594 1.17243 0.90028 1.25728 0.99174 0.95979 1.02608 1.70048 1.28699 1.17630 1.40179 0.85425 0.77897 0.77846 0.80060 1.21532 1.22479 1.19772 0.92387 0.90364 0.92981 0.85313 0.82836 0.85238 0.84923 0.89974 0.93871 0.93937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 7.93 71.98 0.57 -3.41 15 2 C 0.17 5.97 3.30 45.07 0.15 6.12 15 3 H 0.07 2.26 8.14 -2.39 -0.02 2.24 15 4 C -0.60 -19.23 5.83 72.04 0.42 -18.81 15 5 S 2.42 86.38 5.30 -56.49 -0.30 86.08 15 6 O -0.98 -38.32 18.02 -127.39 -2.30 -40.62 15 7 O -0.99 -40.42 18.10 -127.39 -2.31 -42.73 15 8 C -0.59 -22.74 6.35 72.04 0.46 -22.28 15 9 C 0.17 7.43 5.33 86.46 0.46 7.89 15 10 N -0.61 -26.39 2.81 -677.89 -1.91 -28.29 15 11 C -0.26 -12.58 8.41 84.03 0.71 -11.88 15 12 H 0.08 3.74 6.14 -2.91 -0.02 3.72 15 13 C -0.04 -1.90 4.85 84.86 0.41 -1.49 15 14 N -0.92 -47.76 10.06 21.65 0.22 -47.54 15 15 Si 0.96 41.12 29.59 68.60 2.03 43.15 15 16 H -0.29 -12.37 7.11 99.48 0.71 -11.66 15 17 H -0.30 -13.13 7.11 99.48 0.71 -12.42 15 18 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 19 H 0.06 1.84 7.26 -2.39 -0.02 1.83 15 20 H 0.08 1.90 8.14 -2.39 -0.02 1.88 15 21 H 0.05 1.78 7.64 -2.39 -0.02 1.76 15 22 H 0.13 4.25 8.14 -2.39 -0.02 4.23 15 23 H 0.15 3.75 8.14 -2.39 -0.02 3.73 15 24 H 0.13 4.39 8.14 -2.39 -0.02 4.37 15 25 H 0.13 5.75 7.03 -2.39 -0.02 5.73 15 26 H 0.08 3.94 6.00 -2.39 -0.01 3.93 15 27 H 0.04 1.70 8.14 -2.39 -0.02 1.68 15 28 H 0.25 12.90 8.31 -92.71 -0.77 12.12 15 Total: -1.00 -61.06 238.43 -0.24 -61.29 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 1.15 Total: 12.52 kcal Atomic # 6 Polarization: -47.03 SS G_CDS: 3.18 Total: -43.86 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -1.69 Total: -75.83 kcal Atomic # 8 Polarization: -78.74 SS G_CDS: -4.60 Total: -83.35 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Atomic # 16 Polarization: 86.38 SS G_CDS: -0.30 Total: 86.08 kcal Total: -61.06 -0.24 -61.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218969448.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.259 kcal (2) G-P(sol) polarization free energy of solvation -61.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds