Wall clock time and date at job start Sun Mar 29 2020 22:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37939 * 120.07633 * 2 1 4 4 C 1.38382 * 120.14972 * 179.72023 * 3 2 1 5 5 C 1.38375 * 120.30481 * 0.27966 * 4 3 2 6 6 C 1.37932 * 120.15362 * 359.95578 * 5 4 3 7 7 C 1.50694 * 120.07898 * 180.02562 * 6 5 4 8 8 C 1.39646 * 120.07775 * 180.20625 * 2 1 3 9 9 C 1.47727 * 120.15136 * 0.03163 * 8 2 1 10 10 O 1.21591 * 119.99548 * 270.22610 * 9 8 2 11 11 N 1.34770 * 120.00475 * 90.22455 * 9 8 2 12 12 C 1.36863 * 120.00580 * 179.97438 * 11 9 8 13 13 H 1.08000 * 119.99558 * 0.02562 * 12 11 9 14 14 C 1.39041 * 120.00683 * 179.97438 * 12 11 9 15 15 N 1.31368 * 120.00144 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00435 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47150 * 60.00159 * 16 14 12 18 18 H 1.48502 * 109.47485 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47279 * 300.00344 * 16 14 12 20 20 H 1.09001 * 109.47236 * 89.99368 * 1 2 3 21 21 H 1.09000 * 109.47285 * 209.99561 * 1 2 3 22 22 H 1.09006 * 109.47184 * 329.99818 * 1 2 3 23 23 H 1.08002 * 119.92729 * 0.02562 * 3 2 1 24 24 H 1.08002 * 119.84483 * 180.25888 * 4 3 2 25 25 H 1.08003 * 119.91839 * 179.97438 * 5 4 3 26 26 H 1.09003 * 109.47168 * 89.99667 * 7 6 5 27 27 H 1.08993 * 109.47605 * 209.99898 * 7 6 5 28 28 H 1.09002 * 109.47341 * 330.00111 * 7 6 5 29 29 H 0.97011 * 119.99881 * 0.02562 * 11 9 8 30 30 H 0.96998 * 120.00715 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1937 0.0000 4 6 3.5820 1.1954 0.0058 5 6 4.2818 0.0017 0.0059 6 6 3.6033 -1.1992 0.0010 7 6 4.3671 -2.4982 0.0017 8 6 2.2068 -1.2084 -0.0044 9 6 1.4733 -2.4907 -0.0097 10 8 1.1674 -3.0203 1.0412 11 7 1.1432 -3.0734 -1.1792 12 6 0.4641 -4.2617 -1.1841 13 1 0.1923 -4.7322 -0.2507 14 6 0.1230 -4.8626 -2.3907 15 7 0.4531 -4.2902 -3.5261 16 14 -0.8045 -6.4841 -2.3974 17 1 -2.1052 -6.3132 -1.7015 18 1 -1.0449 -6.9111 -3.7992 19 1 -0.0003 -7.5173 -1.6967 20 1 -0.3634 0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5139 23 1 1.6583 2.1290 0.0004 24 1 4.1183 2.1329 0.0100 25 1 5.3618 0.0104 0.0100 26 1 4.5472 -2.8133 1.0295 27 1 3.7861 -3.2616 -0.5158 28 1 5.3205 -2.3595 -0.5081 29 1 1.3876 -2.6510 -2.0176 30 1 0.2155 -4.7095 -4.3678 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230212064.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:21 Heat of formation + Delta-G solvation = -49.512840 kcal Electronic energy + Delta-G solvation = -14467.861483 eV Core-core repulsion = 12033.391153 eV Total energy + Delta-G solvation = -2434.470330 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.08993 -39.09976 -36.04164 -34.50873 -33.48605 -32.62677 -28.83226 -27.54907 -26.98999 -23.97110 -21.60225 -21.04997 -20.03533 -18.17427 -16.93791 -16.89520 -16.22418 -15.93822 -15.25727 -14.87009 -14.60249 -14.31088 -14.13943 -13.85183 -13.59618 -13.57293 -12.96960 -12.83747 -12.54364 -12.46968 -12.26033 -12.15100 -11.91841 -11.57724 -10.52154 -10.10950 -9.61789 -9.48851 -8.52219 -6.02433 0.30421 0.44997 1.35919 1.38943 1.50694 1.93639 2.26425 2.75466 3.15231 3.18418 3.84622 3.92278 4.10196 4.25951 4.41704 4.45907 4.61085 4.67165 4.70885 4.78683 4.91390 4.93270 5.15772 5.32543 5.34522 5.54201 5.57045 5.69601 5.92315 6.11315 6.49323 7.02873 7.44690 7.99514 8.64715 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.038822 B = 0.008242 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.074288 B = 3396.315793 C = 3614.548847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.074 4.074 3 C -0.127 4.127 4 C -0.098 4.098 5 C -0.127 4.127 6 C -0.074 4.074 7 C -0.115 4.115 8 C -0.137 4.137 9 C 0.491 3.509 10 O -0.638 6.638 11 N -0.553 5.553 12 C -0.342 4.342 13 H 0.080 0.920 14 C -0.008 4.008 15 N -0.915 5.915 16 Si 0.996 3.004 17 H -0.270 1.270 18 H -0.267 1.267 19 H -0.270 1.270 20 H 0.072 0.928 21 H 0.034 0.966 22 H 0.099 0.901 23 H 0.157 0.843 24 H 0.166 0.834 25 H 0.157 0.843 26 H 0.070 0.930 27 H 0.036 0.964 28 H 0.099 0.901 29 H 0.394 0.606 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.065 10.624 1.662 12.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.074 4.074 3 C -0.145 4.145 4 C -0.116 4.116 5 C -0.145 4.145 6 C -0.075 4.075 7 C -0.172 4.172 8 C -0.140 4.140 9 C 0.279 3.721 10 O -0.527 6.527 11 N -0.186 5.186 12 C -0.472 4.472 13 H 0.098 0.902 14 C -0.208 4.208 15 N -0.555 5.555 16 Si 0.819 3.181 17 H -0.195 1.195 18 H -0.191 1.191 19 H -0.195 1.195 20 H 0.090 0.910 21 H 0.053 0.947 22 H 0.118 0.882 23 H 0.174 0.826 24 H 0.183 0.817 25 H 0.174 0.826 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.118 0.882 29 H 0.227 0.773 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.817 10.196 2.115 11.928 hybrid contribution -0.575 -1.011 -0.440 1.244 sum 5.242 9.185 1.675 10.707 Atomic orbital electron populations 1.20808 0.91128 1.02689 1.02523 1.20184 0.96485 0.92361 0.98420 1.21280 0.95120 0.96855 1.01203 1.21663 0.93816 0.99061 0.97053 1.21275 1.01248 0.90729 1.01203 1.20183 0.91517 0.97327 0.98431 1.20816 1.00354 0.93604 1.02432 1.19949 0.94599 0.92994 1.06471 1.18370 0.83695 0.86341 0.83716 1.90561 1.61424 1.67651 1.33081 1.41881 1.49215 1.20593 1.06920 1.19668 1.33956 0.99224 0.94318 0.90176 1.26128 0.98036 1.02933 0.93743 1.69661 1.46515 1.41165 0.98126 0.84957 0.78400 0.76918 0.77869 1.19521 1.19100 1.19534 0.90975 0.94723 0.88189 0.82577 0.81672 0.82586 0.91140 0.94506 0.88204 0.77268 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.00 9.62 71.23 0.68 -3.32 16 2 C -0.07 -2.66 5.92 -19.60 -0.12 -2.77 16 3 C -0.13 -3.35 9.69 22.23 0.22 -3.14 16 4 C -0.10 -2.24 10.04 22.34 0.22 -2.02 16 5 C -0.13 -3.35 9.69 22.23 0.22 -3.14 16 6 C -0.07 -2.66 5.92 -19.60 -0.12 -2.78 16 7 C -0.12 -4.02 9.62 71.23 0.69 -3.34 16 8 C -0.14 -5.87 5.63 -20.09 -0.11 -5.98 16 9 C 0.49 26.07 4.14 86.75 0.36 26.43 16 10 O -0.64 -39.00 16.67 -4.00 -0.07 -39.07 16 11 N -0.55 -30.53 5.27 -309.75 -1.63 -32.17 16 12 C -0.34 -20.17 9.68 84.10 0.81 -19.36 16 13 H 0.08 5.00 7.15 -2.91 -0.02 4.98 16 14 C -0.01 -0.42 5.50 84.95 0.47 0.05 16 15 N -0.91 -50.37 13.05 21.68 0.28 -50.09 16 16 Si 1.00 43.40 29.55 68.60 2.03 45.43 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 20 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 21 H 0.03 1.46 7.09 -2.39 -0.02 1.44 16 22 H 0.10 2.64 8.09 -2.38 -0.02 2.62 16 23 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 24 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 25 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 26 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.04 1.54 7.08 -2.39 -0.02 1.53 16 28 H 0.10 2.65 8.09 -2.39 -0.02 2.63 16 29 H 0.39 21.30 7.88 -92.70 -0.73 20.57 16 30 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -71.21 265.45 4.35 -66.86 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.42 Total: 28.39 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 3.32 Total: -19.36 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -1.35 Total: -82.25 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.07 Total: -39.07 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -71.21 4.35 -66.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230212064.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.351 kcal (2) G-P(sol) polarization free energy of solvation -71.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds