Wall clock time and date at job start Sun Mar 29 2020 21:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 119.99856 * 2 1 4 4 C 1.50701 * 109.46949 * 269.99269 * 3 2 1 5 5 H 1.07999 * 120.00206 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99809 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00390 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99864 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47401 * 59.99810 * 8 6 4 10 10 H 1.48504 * 109.47457 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47224 * 300.00051 * 8 6 4 12 12 C 1.39076 * 120.00063 * 179.97438 * 2 1 3 13 13 C 1.39364 * 120.09328 * 4.99915 * 12 2 1 14 14 C 1.39895 * 117.73742 * 179.72275 * 13 12 2 15 15 C 1.43201 * 121.11981 * 180.27819 * 14 13 12 16 16 N 5.90534 * 86.25839 * 182.95232 * 2 1 3 17 17 C 1.40061 * 117.75331 * 0.25668 * 14 13 12 18 18 N 1.31688 * 119.81182 * 359.97438 * 17 14 13 19 19 N 1.28267 * 122.45233 * 0.02562 * 18 17 14 20 20 H 1.08999 * 109.47286 * 270.00481 * 1 2 3 21 21 H 1.08999 * 109.47441 * 30.00617 * 1 2 3 22 22 H 1.09002 * 109.47299 * 149.99927 * 1 2 3 23 23 H 1.08998 * 109.47233 * 29.99921 * 3 2 1 24 24 H 1.09003 * 109.46860 * 150.00013 * 3 2 1 25 25 H 0.96998 * 119.99925 * 179.97438 * 7 6 4 26 26 H 1.08002 * 121.13279 * 0.02562 * 13 12 2 27 27 H 1.08004 * 120.09510 * 179.97438 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0976 1.0960 -2.2417 6 6 3.1260 2.8778 -1.6728 7 7 3.5532 3.6181 -0.6732 8 14 3.4369 3.4173 -3.4339 9 1 2.1392 3.5944 -4.1338 10 1 4.1795 4.7034 -3.4341 11 1 4.2397 2.3827 -4.1342 12 6 2.1604 -1.2044 0.0005 13 6 1.4695 -2.4102 -0.1040 14 6 2.2184 -3.5918 -0.1044 15 6 1.5834 -4.8706 -0.2143 16 7 1.0796 -5.8849 -0.3035 17 6 3.6104 -3.4818 0.0057 18 7 4.1673 -2.2926 0.1044 19 7 3.4810 -1.2090 0.1048 20 1 -0.3634 0.0001 1.0276 21 1 -0.3634 0.8899 -0.5139 22 1 -0.3634 -0.8900 -0.5138 23 1 1.6083 2.0284 0.5138 24 1 3.1499 1.1384 0.5139 25 1 4.0301 4.4440 -0.8505 26 1 0.3929 -2.4316 -0.1869 27 1 4.2252 -4.3697 0.0098 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306575445.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:16 Heat of formation + Delta-G solvation = 101.818155 kcal Electronic energy + Delta-G solvation = -13672.260643 eV Core-core repulsion = 11238.530836 eV Total energy + Delta-G solvation = -2433.729807 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.66454 -36.98752 -36.49820 -33.12429 -32.69813 -30.91716 -28.22491 -25.96226 -25.08609 -23.31097 -21.84179 -18.72223 -17.38357 -16.54145 -16.31342 -15.72370 -14.97821 -14.67031 -13.88572 -13.59872 -13.53073 -13.31757 -13.19801 -12.74381 -12.21070 -11.78431 -11.28527 -11.05796 -10.72670 -10.65067 -10.50887 -10.13701 -9.90803 -9.49640 -9.20869 -8.49254 -7.22687 -6.09768 -4.16961 0.53905 1.46978 2.42286 2.97358 3.28257 3.33512 3.34550 3.43813 3.65585 4.05721 4.38451 4.69014 4.70873 4.92999 5.17615 5.24200 5.46186 5.64639 5.74639 5.97303 6.08825 6.20619 6.86658 7.23973 7.32114 7.66375 7.87231 7.95522 8.12576 8.85369 9.28788 9.48394 10.96609 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.039181 B = 0.007220 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.461592 B = 3877.228463 C = 4043.471080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.574 5.574 3 C 0.248 3.752 4 C -0.532 4.532 5 H 0.056 0.944 6 C 0.065 3.935 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.358 3.642 13 C -0.147 4.147 14 C 0.008 3.992 15 C 0.266 3.734 16 N -0.409 5.409 17 C -0.006 4.006 18 N -0.189 5.189 19 N -0.266 5.266 20 H 0.050 0.950 21 H 0.082 0.918 22 H 0.058 0.942 23 H 0.035 0.965 24 H 0.055 0.945 25 H 0.265 0.735 26 H 0.150 0.850 27 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.910 -9.095 1.761 10.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.282 5.282 3 C 0.129 3.871 4 C -0.571 4.571 5 H 0.075 0.925 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.115 3.885 13 C -0.185 4.185 14 C -0.007 4.007 15 C -0.050 4.050 16 N -0.085 5.085 17 C -0.177 4.177 18 N -0.031 5.031 19 N -0.120 5.120 20 H 0.068 0.932 21 H 0.101 0.899 22 H 0.077 0.923 23 H 0.053 0.947 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.168 0.832 27 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.346 -9.321 1.826 10.446 hybrid contribution -0.987 -0.097 -1.180 1.541 sum -5.333 -9.419 0.646 10.843 Atomic orbital electron populations 1.21736 0.79704 1.03026 1.00909 1.47175 1.04972 1.04124 1.71954 1.19498 0.92772 0.77072 0.97746 1.21358 1.37157 1.06553 0.92045 0.92543 1.24899 0.95183 0.96272 0.97401 1.69908 1.37926 1.14323 1.30804 0.86568 0.78356 0.77939 0.84614 1.20332 1.21112 1.20116 1.19972 0.90939 0.86939 0.90637 1.21905 1.01671 0.90604 1.04333 1.16732 0.94062 0.86791 1.03066 1.25349 0.93312 0.92535 0.93810 1.81244 1.08153 1.10953 1.08106 1.23953 0.90870 0.98928 1.03985 1.72916 1.30275 0.94558 1.05327 1.73136 1.03803 1.18949 1.16150 0.93174 0.89920 0.92313 0.94698 0.92688 0.92509 0.83196 0.81446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.27 10.30 59.85 0.62 1.89 15 2 N -0.57 -11.01 2.97 -182.99 -0.54 -11.55 15 3 C 0.25 5.94 5.23 -5.19 -0.03 5.91 15 4 C -0.53 -14.12 9.39 -34.44 -0.32 -14.44 15 5 H 0.06 1.50 7.81 -52.49 -0.41 1.09 15 6 C 0.07 1.78 5.46 -17.82 -0.10 1.68 15 7 N -0.89 -25.29 13.29 55.43 0.74 -24.56 15 8 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 15 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 15 12 C 0.36 6.56 7.45 -154.80 -1.15 5.41 15 13 C -0.15 -2.08 9.11 -38.54 -0.35 -2.43 15 14 C 0.01 0.10 5.76 -106.67 -0.61 -0.51 15 15 C 0.27 3.36 15.42 -22.47 -0.35 3.02 15 16 N -0.41 -5.72 18.54 41.84 0.78 -4.95 15 17 C -0.01 -0.09 11.08 -16.93 -0.19 -0.27 15 18 N -0.19 -3.41 11.47 30.81 0.35 -3.06 15 19 N -0.27 -5.50 10.24 31.21 0.32 -5.18 15 20 H 0.05 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.08 1.21 8.07 -51.93 -0.42 0.79 15 22 H 0.06 0.67 6.03 -51.93 -0.31 0.36 15 23 H 0.04 0.86 8.07 -51.93 -0.42 0.44 15 24 H 0.06 1.46 7.32 -51.93 -0.38 1.08 15 25 H 0.27 7.16 8.31 -40.82 -0.34 6.82 15 26 H 0.15 1.68 6.14 -52.49 -0.32 1.36 15 27 H 0.17 1.73 8.06 -52.48 -0.42 1.31 15 LS Contribution 254.51 15.07 3.84 3.84 Total: -1.00 -29.77 254.51 -4.27 -34.05 By element: Atomic # 1 Polarization: -2.63 SS G_CDS: -2.24 Total: -4.87 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -2.48 Total: 0.25 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 1.64 Total: -49.30 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.77 -4.27 -34.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306575445.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.863 kcal (2) G-P(sol) polarization free energy of solvation -29.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds