Wall clock time and date at job start Sun Mar 29 2020 22:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99878 * 2 1 4 4 H 1.48502 * 109.47368 * 240.00343 * 3 2 1 5 5 H 1.48494 * 109.47325 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47101 * 120.00143 * 3 2 1 7 7 C 1.37882 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46984 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47164 * 179.97438 * 10 9 7 12 12 C 1.46900 * 111.00253 * 189.99841 * 11 10 9 13 13 C 1.52998 * 109.47213 * 163.05487 * 12 11 10 14 14 F 1.39898 * 109.47293 * 307.21654 * 13 12 11 15 15 F 1.39908 * 109.46930 * 67.21494 * 13 12 11 16 16 C 1.46905 * 110.99858 * 66.04895 * 11 10 9 17 17 C 1.53009 * 117.49511 * 275.00450 * 16 11 10 18 18 C 1.53001 * 117.49764 * 206.38359 * 16 11 10 19 19 H 0.96996 * 119.99903 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.46682 * 60.00211 * 9 7 2 21 21 H 1.08996 * 109.46738 * 300.00206 * 9 7 2 22 22 H 1.09002 * 109.46991 * 59.99644 * 10 9 7 23 23 H 1.09006 * 109.47066 * 299.99849 * 10 9 7 24 24 H 1.09004 * 109.47341 * 283.05642 * 12 11 10 25 25 H 1.09001 * 109.46754 * 43.05429 * 12 11 10 26 26 H 1.08995 * 109.47264 * 187.21406 * 13 12 11 27 27 H 1.09003 * 115.54922 * 60.71068 * 16 11 10 28 28 H 1.09000 * 117.49760 * 359.97438 * 17 16 11 29 29 H 1.08997 * 117.49252 * 145.02212 * 17 16 11 30 30 H 1.09001 * 117.49881 * 214.97398 * 18 16 11 31 31 H 1.08996 * 117.49732 * 359.97369 * 18 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 7 1.5109 -4.9343 -0.0012 12 6 2.4176 -6.0655 0.2357 13 6 1.6037 -7.2939 0.6473 14 9 0.7698 -6.9627 1.7206 15 9 0.8250 -7.7209 -0.4338 16 6 0.7641 -5.1116 -1.2538 17 6 -0.6242 -4.4748 -1.3447 18 6 -0.4859 -5.9929 -1.2123 19 1 -0.4850 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 2.8727 -3.6046 0.8877 23 1 2.8713 -3.6039 -0.8923 24 1 2.9707 -6.2854 -0.6775 25 1 3.1172 -5.8098 1.0315 26 1 2.2802 -8.0945 0.9463 27 1 1.3674 -5.1362 -2.1613 28 1 -0.9835 -3.9247 -0.4750 29 1 -0.9344 -4.0803 -2.3123 30 1 -0.7053 -6.5969 -2.0927 31 1 -0.7539 -6.4414 -0.2557 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308067826.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:18 Heat of formation + Delta-G solvation = -91.457353 kcal Electronic energy + Delta-G solvation = -15445.718703 eV Core-core repulsion = 12591.033086 eV Total energy + Delta-G solvation = -2854.685616 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.70780 -47.69070 -39.46217 -35.76693 -34.93005 -32.20764 -29.18406 -26.16418 -24.03034 -23.04285 -22.72459 -21.17347 -18.54974 -18.10850 -17.96635 -17.38073 -16.54004 -16.43216 -16.24022 -15.49363 -14.72843 -14.32303 -14.20073 -14.08930 -13.85934 -13.73697 -13.11682 -12.84068 -12.73871 -12.51253 -12.23398 -12.01984 -11.94026 -11.38155 -11.33014 -10.91335 -10.70231 -10.46793 -9.29827 -8.17198 -6.28402 1.39930 1.43133 1.50920 2.40335 2.77914 2.96208 3.15927 3.19681 3.52052 3.75617 4.04819 4.09390 4.15943 4.34081 4.51098 4.57319 4.65804 4.71105 4.84908 4.86316 5.11970 5.17128 5.37414 5.49228 5.71341 5.82720 6.08950 6.20480 6.33841 6.89522 7.39982 8.94369 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.048861 B = 0.007076 C = 0.006651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.922360 B = 3956.071130 C = 4208.805796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.035 3.965 10 C 0.083 3.917 11 N -0.527 5.527 12 C -0.002 4.002 13 C 0.264 3.736 14 F -0.219 7.219 15 F -0.210 7.210 16 C -0.001 4.001 17 C -0.180 4.180 18 C -0.123 4.123 19 H 0.262 0.738 20 H 0.010 0.990 21 H -0.017 1.017 22 H 0.067 0.933 23 H 0.026 0.974 24 H 0.079 0.921 25 H 0.113 0.887 26 H 0.159 0.841 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.935 -14.969 -1.257 15.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.002 4.002 10 C -0.044 4.044 11 N -0.252 5.252 12 C -0.130 4.130 13 C 0.210 3.790 14 F -0.200 7.200 15 F -0.191 7.191 16 C -0.110 4.110 17 C -0.218 4.218 18 C -0.160 4.160 19 H 0.071 0.929 20 H 0.028 0.972 21 H 0.001 0.999 22 H 0.086 0.914 23 H 0.044 0.956 24 H 0.097 0.903 25 H 0.132 0.868 26 H 0.176 0.824 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.131 0.869 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.424 -14.851 -0.867 15.520 hybrid contribution 0.498 1.247 -0.555 1.453 sum 4.922 -13.604 -1.422 14.537 Atomic orbital electron populations 1.70116 1.07791 1.27654 1.51432 1.25948 0.95725 1.03225 0.94778 0.85516 0.78258 0.78191 0.79141 1.19151 1.20956 1.19201 1.21636 0.93485 0.92427 1.50872 0.92202 1.18966 0.94287 0.91518 0.95439 1.21986 0.95324 0.87844 0.99230 1.61763 1.27680 1.02277 1.33448 1.23364 0.94949 0.90782 1.03924 1.22428 0.85221 0.97483 0.73873 1.92949 1.75580 1.94387 1.57104 1.92956 1.78013 1.91132 1.56994 1.22403 0.89879 1.07204 0.91471 1.22995 0.99520 0.97283 1.02009 1.23129 0.98204 0.91316 1.03354 0.92908 0.97215 0.99905 0.91430 0.95615 0.90330 0.86840 0.82427 0.89694 0.91337 0.88908 0.86946 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.55 -31.47 9.11 25.60 0.23 -31.24 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.04 1.91 4.30 29.85 0.13 2.04 16 10 C 0.08 3.50 4.89 86.30 0.42 3.92 16 11 N -0.53 -19.08 4.38 -870.95 -3.81 -22.89 16 12 C 0.00 -0.04 5.36 86.30 0.46 0.42 16 13 C 0.26 5.79 5.27 71.98 0.38 6.17 16 14 F -0.22 -6.50 16.75 44.97 0.75 -5.75 16 15 F -0.21 -5.19 12.52 44.97 0.56 -4.63 16 16 C 0.00 -0.03 4.17 44.92 0.19 0.15 16 17 C -0.18 -6.90 8.36 30.60 0.26 -6.65 16 18 C -0.12 -3.82 7.45 30.60 0.23 -3.59 16 19 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 20 H 0.01 0.55 5.80 -2.39 -0.01 0.53 16 21 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 22 H 0.07 2.73 7.85 -2.39 -0.02 2.71 16 23 H 0.03 1.05 8.12 -2.38 -0.02 1.03 16 24 H 0.08 1.69 8.04 -2.39 -0.02 1.67 16 25 H 0.11 2.49 7.79 -2.39 -0.02 2.47 16 26 H 0.16 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.07 3.13 7.56 -2.39 -0.02 3.12 16 29 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 30 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.09 3.01 6.51 -2.39 -0.02 3.00 16 Total: -1.00 -68.28 260.59 3.68 -64.60 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.11 Total: 7.58 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 2.76 Total: -28.24 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -3.53 Total: -80.29 kcal Atomic # 9 Polarization: -11.70 SS G_CDS: 1.32 Total: -10.38 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -68.28 3.68 -64.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308067826.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.862 kcal (2) G-P(sol) polarization free energy of solvation -68.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds