Wall clock time and date at job start Sun Mar 29 2020 21:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 119.99511 * 2 1 4 4 H 1.08004 * 119.99253 * 162.01014 * 3 2 1 5 5 C 1.38808 * 120.00526 * 342.00378 * 3 2 1 6 6 N 1.31616 * 119.99998 * 347.84183 * 5 3 2 7 7 Si 1.86800 * 120.00130 * 167.83197 * 5 3 2 8 8 H 1.48501 * 109.47075 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.47035 * 120.00371 * 7 5 3 10 10 H 1.48493 * 109.47480 * 240.00459 * 7 5 3 11 11 C 1.46494 * 119.99998 * 180.27687 * 2 1 3 12 12 C 1.54349 * 110.82298 * 52.69506 * 11 2 1 13 13 C 1.51368 * 105.17242 * 215.42463 * 12 11 2 14 14 C 1.38487 * 130.39537 * 197.18760 * 13 12 11 15 15 C 1.38101 * 120.22173 * 180.02562 * 14 13 12 16 16 C 1.38260 * 119.93039 * 359.97438 * 15 14 13 17 17 C 1.38101 * 119.93444 * 0.02562 * 16 15 14 18 18 C 1.38229 * 109.75463 * 17.19225 * 13 12 11 19 19 C 1.51367 * 109.75759 * 359.97438 * 18 13 12 20 20 H 1.09004 * 109.46969 * 84.91148 * 1 2 3 21 21 H 1.09002 * 109.46964 * 204.91025 * 1 2 3 22 22 H 1.09001 * 109.47449 * 324.91317 * 1 2 3 23 23 H 0.97003 * 120.00164 * 179.97438 * 6 5 3 24 24 H 1.09004 * 110.73153 * 176.31860 * 11 2 1 25 25 H 1.08995 * 110.30508 * 334.34904 * 12 11 2 26 26 H 1.08997 * 110.30083 * 96.50513 * 12 11 2 27 27 H 1.08001 * 119.89188 * 0.02562 * 14 13 12 28 28 H 1.07996 * 120.04115 * 179.97438 * 15 14 13 29 29 H 1.07997 * 120.03189 * 179.97438 * 16 15 14 30 30 H 1.08003 * 119.88969 * 180.02562 * 17 16 15 31 31 H 1.09001 * 110.29812 * 223.88454 * 19 18 13 32 32 H 1.09002 * 110.38648 * 101.78085 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1901 1.2088 0.2889 5 6 1.5065 2.3587 -0.3714 6 7 0.3245 2.3068 -0.9479 7 14 2.3185 4.0105 -0.0527 8 1 3.6344 3.7971 0.6017 9 1 2.5165 4.7216 -1.3413 10 1 1.4506 4.8259 0.8344 11 6 2.1975 -1.2687 -0.0061 12 6 1.7146 -2.1754 -1.1581 13 6 1.7859 -3.5845 -0.6096 14 6 1.7817 -4.8041 -1.2655 15 6 1.8559 -5.9806 -0.5460 16 6 1.9351 -5.9416 0.8338 17 6 1.9393 -4.7263 1.4897 18 6 1.8649 -3.5454 0.7699 19 6 1.8529 -2.1075 1.2426 20 1 -0.3633 0.0912 -1.0237 21 1 -0.3633 -0.9321 0.4329 22 1 -0.3634 0.8409 0.5907 23 1 -0.1251 3.1264 -1.2071 24 1 3.2715 -1.0938 -0.0707 25 1 0.6889 -1.9271 -1.4304 26 1 2.3717 -2.0721 -2.0215 27 1 1.7203 -4.8355 -2.3433 28 1 1.8520 -6.9301 -1.0605 29 1 1.9927 -6.8606 1.3981 30 1 2.0016 -4.6966 2.5675 31 1 2.6040 -1.9581 2.0182 32 1 0.8650 -1.8391 1.6170 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336621199.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:56 Heat of formation + Delta-G solvation = 46.906850 kcal Electronic energy + Delta-G solvation = -14243.324340 eV Core-core repulsion = 11976.179655 eV Total energy + Delta-G solvation = -2267.144686 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.69190 -36.36253 -33.64325 -31.06446 -30.69229 -27.49974 -26.73136 -26.00652 -23.14546 -21.36328 -20.51544 -19.13274 -16.90603 -15.96023 -15.18355 -15.02873 -14.64265 -14.02779 -13.08818 -13.02628 -12.83068 -12.37916 -12.19920 -12.04936 -11.86006 -10.92804 -10.80033 -10.71958 -10.43245 -10.42486 -10.40921 -10.31083 -9.91308 -9.80417 -8.56003 -8.49916 -8.08630 -6.81070 -5.71794 -3.14847 1.67191 1.67929 3.38461 3.45537 3.47666 4.06576 4.48435 4.89205 5.11127 5.19658 5.29315 5.43701 5.62093 5.74008 5.78241 5.85002 5.95998 6.09585 6.28298 6.42379 6.44727 6.55472 6.69609 6.73763 6.76124 6.88262 6.99186 7.10209 7.32303 7.45785 7.73839 7.83836 8.38228 9.24184 9.87591 10.34918 11.33154 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.065943 B = 0.006708 C = 0.006535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.507050 B = 4173.324203 C = 4283.688057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.253 4.253 4 H 0.072 0.928 5 C -0.001 4.001 6 N -0.911 5.911 7 Si 0.906 3.094 8 H -0.278 1.278 9 H -0.291 1.291 10 H -0.290 1.290 11 C 0.184 3.816 12 C -0.104 4.104 13 C -0.085 4.085 14 C -0.114 4.114 15 C -0.130 4.130 16 C -0.131 4.131 17 C -0.114 4.114 18 C -0.087 4.087 19 C -0.105 4.105 20 H 0.027 0.973 21 H -0.002 1.002 22 H 0.050 0.950 23 H 0.252 0.748 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.148 -12.756 2.153 13.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.312 5.312 3 C -0.383 4.383 4 H 0.090 0.910 5 C -0.199 4.199 6 N -0.556 5.556 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.218 1.218 10 H -0.216 1.216 11 C 0.074 3.926 12 C -0.143 4.143 13 C -0.086 4.086 14 C -0.132 4.132 15 C -0.148 4.148 16 C -0.149 4.149 17 C -0.132 4.132 18 C -0.087 4.087 19 C -0.144 4.144 20 H 0.046 0.954 21 H 0.017 0.983 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.085 0.915 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.084 0.916 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.032 -12.553 2.101 12.889 hybrid contribution 0.285 0.788 0.051 0.839 sum 2.317 -11.765 2.152 12.183 Atomic orbital electron populations 1.20807 0.82365 0.95604 0.99404 1.44001 1.01996 1.00105 1.85103 1.19339 0.95713 0.84624 1.38598 0.91027 1.24955 0.97382 0.98335 0.99219 1.70115 1.15490 1.26292 1.43741 0.86146 0.78609 0.84112 0.77461 1.20345 1.21771 1.21638 1.20938 0.95933 0.85527 0.90190 1.21788 1.02711 0.89524 1.00289 1.20863 0.97678 0.95286 0.94742 1.20645 1.01503 0.91522 0.99562 1.20924 1.02075 0.97550 0.94229 1.20917 1.02223 0.97199 0.94549 1.20629 1.01593 0.91572 0.99427 1.20819 0.98013 0.95412 0.94498 1.21788 1.02433 0.89510 1.00678 0.95444 0.98323 0.93121 0.93810 0.90811 0.89821 0.91524 0.86702 0.86563 0.86575 0.86748 0.91573 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.03 7.38 59.85 0.44 4.47 16 2 N -0.59 -14.85 2.95 -171.88 -0.51 -15.35 16 3 C -0.25 -6.95 9.68 -15.06 -0.15 -7.09 16 4 H 0.07 1.91 7.82 -52.48 -0.41 1.50 16 5 C 0.00 -0.04 5.14 -17.43 -0.09 -0.13 16 6 N -0.91 -26.54 10.37 55.49 0.58 -25.96 16 7 Si 0.91 21.85 29.57 -169.99 -5.03 16.82 16 8 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 9 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 C 0.18 3.84 3.57 -66.53 -0.24 3.60 16 12 C -0.10 -1.98 6.38 -26.85 -0.17 -2.15 16 13 C -0.09 -1.46 6.14 -104.21 -0.64 -2.10 16 14 C -0.11 -1.70 10.04 -39.54 -0.40 -2.09 16 15 C -0.13 -1.71 10.05 -39.62 -0.40 -2.10 16 16 C -0.13 -1.71 10.05 -39.62 -0.40 -2.11 16 17 C -0.11 -1.66 10.04 -39.54 -0.40 -2.06 16 18 C -0.09 -1.47 6.14 -104.20 -0.64 -2.11 16 19 C -0.10 -1.92 6.31 -26.86 -0.17 -2.09 16 20 H 0.03 0.73 7.44 -51.93 -0.39 0.34 16 21 H 0.00 -0.04 6.58 -51.93 -0.34 -0.38 16 22 H 0.05 1.36 6.96 -51.93 -0.36 1.00 16 23 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.07 1.54 7.92 -51.93 -0.41 1.13 16 25 H 0.08 1.71 6.87 -51.93 -0.36 1.35 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 28 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 29 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.59 6.46 -51.93 -0.34 1.25 16 LS Contribution 261.98 15.07 3.95 3.95 Total: -1.00 -29.24 261.98 -8.53 -37.77 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -4.28 Total: -1.26 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -3.24 Total: -15.96 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.07 Total: -41.32 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.24 -8.53 -37.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336621199.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.675 kcal (2) G-P(sol) polarization free energy of solvation -29.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds