Wall clock time and date at job start Sun Mar 29 2020 22:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86802 * 120.00307 * 2 1 4 4 H 1.48502 * 109.46982 * 239.99918 * 3 2 1 5 5 H 1.48499 * 109.46920 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47166 * 119.99619 * 3 2 1 7 7 C 1.40059 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99791 * 180.02562 * 7 2 1 9 9 C 1.46374 * 119.99476 * 359.97438 * 7 2 1 10 10 O 1.21679 * 120.00669 * 0.02562 * 9 7 2 11 11 N 1.34783 * 119.99375 * 180.02562 * 9 7 2 12 12 C 1.46502 * 119.99752 * 180.27887 * 11 9 7 13 13 C 1.52993 * 109.46822 * 174.02218 * 12 11 9 14 14 C 1.53005 * 115.55198 * 294.78483 * 13 12 11 15 15 F 1.39898 * 109.46972 * 305.00467 * 14 13 12 16 16 F 1.39904 * 109.46637 * 64.99996 * 14 13 12 17 17 C 1.53003 * 117.49692 * 149.12479 * 13 12 11 18 18 C 1.52997 * 117.50393 * 80.46341 * 13 12 11 19 19 H 0.97000 * 120.00334 * 0.02562 * 1 2 3 20 20 H 0.96993 * 120.00099 * 359.97438 * 11 9 7 21 21 H 1.09007 * 109.46758 * 294.02055 * 12 11 9 22 22 H 1.09003 * 109.47283 * 54.01672 * 12 11 9 23 23 H 1.08996 * 109.47094 * 185.00207 * 14 13 12 24 24 H 1.09004 * 117.50330 * 359.97438 * 17 13 12 25 25 H 1.08998 * 117.50231 * 145.02187 * 17 13 12 26 26 H 1.08997 * 117.49894 * 214.97798 * 18 13 12 27 27 H 1.09008 * 117.49591 * 359.97438 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2758 2.7464 -0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0069 -1.2130 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2749 -2.4805 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9488 -3.6478 0.0027 12 6 1.2163 -4.9165 -0.0023 13 6 2.2043 -6.0752 -0.1502 14 6 2.9618 -6.1312 -1.4784 15 9 2.0470 -6.1405 -2.5368 16 9 3.7920 -5.0106 -1.5893 17 6 1.8367 -7.4056 0.5100 18 6 2.9463 -6.5357 1.1061 19 1 -0.4851 0.8400 -0.0004 20 1 2.9188 -3.6478 0.0023 21 1 0.6684 -5.0233 0.9340 22 1 0.5152 -4.9280 -0.8369 23 1 3.5672 -7.0369 -1.5134 24 1 0.8912 -7.4553 1.0500 25 1 2.1350 -8.3207 -0.0016 26 1 3.9739 -6.8788 0.9863 27 1 2.7308 -6.0128 2.0380 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379369740.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:56 Heat of formation + Delta-G solvation = -123.848655 kcal Electronic energy + Delta-G solvation = -15001.080531 eV Core-core repulsion = 12009.157227 eV Total energy + Delta-G solvation = -2991.923303 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.081 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.66681 -46.68217 -38.29299 -36.65583 -32.82897 -31.99714 -27.58833 -26.59812 -24.88067 -22.56166 -20.00020 -19.53534 -17.47630 -16.90451 -16.81879 -16.35823 -15.25765 -14.75905 -13.99898 -13.95804 -13.55625 -13.35660 -13.04373 -12.89835 -12.28360 -12.14995 -11.66815 -11.50050 -11.17934 -10.90101 -10.65354 -10.38517 -10.34076 -10.19761 -10.14911 -8.78742 -7.55729 -7.43163 -6.12399 -4.57182 3.20499 3.24579 3.26868 3.45572 3.85148 4.15889 4.22960 4.48904 4.64184 4.66503 4.76428 5.16757 5.22610 5.43830 5.50578 5.77469 5.79612 5.86550 6.01524 6.39093 6.48240 7.49654 8.01812 8.15780 8.40025 9.08675 9.61431 10.66622 10.85273 Molecular weight = 219.08amu Principal moments of inertia in cm(-1) A = 0.042731 B = 0.007731 C = 0.007409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.101031 B = 3621.095402 C = 3778.351005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.583 6.583 11 N -0.764 5.764 12 C 0.172 3.828 13 C -0.205 4.205 14 C 0.306 3.694 15 F -0.200 7.200 16 F -0.195 7.195 17 C -0.151 4.151 18 C -0.151 4.151 19 H 0.268 0.732 20 H 0.384 0.616 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.104 0.896 24 H 0.107 0.893 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.490 -12.750 0.368 14.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.360 3.640 10 O -0.466 6.466 11 N -0.421 5.421 12 C 0.047 3.953 13 C -0.207 4.207 14 C 0.252 3.748 15 F -0.182 7.182 16 F -0.176 7.176 17 C -0.188 4.188 18 C -0.188 4.188 19 H 0.079 0.921 20 H 0.216 0.784 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.121 0.879 24 H 0.125 0.875 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.391 -12.609 0.335 14.140 hybrid contribution 0.925 0.854 -0.156 1.268 sum 7.316 -11.755 0.179 13.847 Atomic orbital electron populations 1.70014 1.07056 1.27269 1.35517 1.25705 0.94602 1.00237 0.92632 0.86433 0.79802 0.81045 0.79437 1.19276 1.20608 1.19306 1.20850 0.93570 0.89381 1.54323 0.91486 1.18201 0.87154 0.82411 0.76257 1.90588 1.14125 1.86897 1.55032 1.46138 1.08902 1.04355 1.82667 1.20282 0.91944 0.81935 1.01141 1.22801 1.04541 0.99780 0.93544 1.21113 0.82689 0.87309 0.83679 1.92987 1.68867 1.97014 1.59290 1.92995 1.72192 1.56065 1.96353 1.23029 1.00868 0.92372 1.02544 1.23035 0.97079 1.02274 0.96389 0.92125 0.78390 0.92852 0.92057 0.87919 0.87491 0.88164 0.88240 0.87369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.76 11.83 55.55 0.66 -23.11 15 2 C 0.09 2.53 5.50 -17.37 -0.10 2.43 15 3 Si 0.91 20.75 29.56 -169.99 -5.02 15.72 15 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15 7 C -0.54 -16.01 9.54 -35.63 -0.34 -16.35 15 8 H 0.07 1.82 7.85 -52.49 -0.41 1.40 15 9 C 0.56 16.53 7.75 -12.98 -0.10 16.43 15 10 O -0.58 -19.59 15.01 5.21 0.08 -19.51 15 11 N -0.76 -18.08 5.20 -61.72 -0.32 -18.40 15 12 C 0.17 3.45 5.40 -4.04 -0.02 3.42 15 13 C -0.21 -2.92 1.77 -154.51 -0.27 -3.20 15 14 C 0.31 4.27 5.10 37.16 0.19 4.46 15 15 F -0.20 -3.33 17.01 2.25 0.04 -3.29 15 16 F -0.19 -3.25 15.61 2.25 0.04 -3.21 15 17 C -0.15 -1.56 9.91 -26.69 -0.26 -1.83 15 18 C -0.15 -1.67 9.97 -26.69 -0.27 -1.94 15 19 H 0.27 7.50 8.29 -40.82 -0.34 7.17 15 20 H 0.38 8.29 7.09 -40.82 -0.29 8.01 15 21 H 0.05 1.08 8.09 -51.92 -0.42 0.66 15 22 H 0.06 1.37 7.94 -51.93 -0.41 0.96 15 23 H 0.10 0.97 8.09 -51.93 -0.42 0.55 15 24 H 0.11 1.10 8.14 -51.93 -0.42 0.67 15 25 H 0.10 0.80 8.14 -51.93 -0.42 0.38 15 26 H 0.10 0.89 8.14 -51.93 -0.42 0.46 15 27 H 0.11 1.28 8.14 -51.92 -0.42 0.86 15 LS Contribution 250.41 15.07 3.77 3.77 Total: -1.00 -35.70 250.41 -4.72 -40.41 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -2.78 Total: 4.18 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -1.17 Total: 3.43 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.34 Total: -41.50 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: 0.08 Total: -19.51 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 0.07 Total: -6.50 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -35.70 -4.72 -40.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379369740.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.435 kcal (2) G-P(sol) polarization free energy of solvation -35.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds