Wall clock time and date at job start Sun Mar 29 2020 21:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99674 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99905 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99995 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05814 * 359.63188 * 13 11 10 15 15 C 1.53760 * 87.88929 * 152.95955 * 14 13 11 16 16 F 1.39897 * 114.26715 * 139.79176 * 15 14 13 17 17 C 1.47065 * 136.05752 * 180.02562 * 13 11 10 18 18 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 20 20 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 21 21 H 1.09001 * 113.47005 * 267.69331 * 14 13 11 22 22 H 1.09003 * 113.46723 * 38.13512 * 14 13 11 23 23 H 1.09001 * 114.39663 * 272.68097 * 15 14 13 24 24 H 1.09001 * 113.46952 * 321.86856 * 17 13 11 25 25 H 1.09004 * 113.46955 * 92.25117 * 17 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 8 0.7913 -5.5023 -0.0037 13 7 2.8443 -6.3430 -0.0136 14 6 4.3052 -6.5116 -0.0271 15 6 4.0986 -7.8632 0.6762 16 9 4.9349 -8.8853 0.2146 17 6 2.7297 -7.8092 -0.0165 18 1 -0.4851 0.8400 -0.0004 19 1 3.1212 -3.7293 -0.8992 20 1 3.1279 -3.7332 0.8807 21 1 4.7224 -6.6035 -1.0299 22 1 4.8324 -5.7788 0.5838 23 1 4.0523 -7.8025 1.7636 24 1 1.9144 -8.1821 0.6034 25 1 2.7309 -8.2427 -1.0166 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393356264.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:40 Heat of formation + Delta-G solvation = -46.236526 kcal Electronic energy + Delta-G solvation = -12266.643890 eV Core-core repulsion = 9708.466183 eV Total energy + Delta-G solvation = -2558.177707 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 219.047 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.92170 -39.95642 -37.35996 -32.46853 -30.59405 -27.93294 -26.25216 -25.48606 -22.25330 -19.23570 -17.80713 -17.18459 -16.81917 -15.92646 -15.41096 -14.83914 -14.63130 -14.60026 -13.86065 -13.37573 -12.99454 -12.66268 -12.41533 -12.10297 -11.68609 -11.09155 -11.06154 -10.79802 -10.70374 -9.86795 -9.57236 -9.10403 -8.79988 -8.29986 -6.55855 -6.25336 -3.97025 2.58574 2.91477 3.20190 3.21060 3.27686 3.48432 3.70029 4.11435 4.16658 4.57385 4.66014 4.89533 5.09981 5.17261 5.20459 5.36025 5.47566 5.73845 5.81783 5.91007 6.06999 7.55889 7.66037 8.31398 8.39369 9.19837 10.82104 Molecular weight = 219.05amu Principal moments of inertia in cm(-1) A = 0.064990 B = 0.005934 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.731832 B = 4717.780953 C = 5100.480615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.145 4.145 11 C 0.567 3.433 12 O -0.508 6.508 13 N -0.652 5.652 14 C 0.080 3.920 15 C 0.052 3.948 16 F -0.197 7.197 17 C 0.082 3.918 18 H 0.269 0.731 19 H 0.091 0.909 20 H 0.091 0.909 21 H 0.095 0.905 22 H 0.092 0.908 23 H 0.127 0.873 24 H 0.089 0.911 25 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.027 -12.745 0.912 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.295 4.295 11 C 0.357 3.643 12 O -0.381 6.381 13 N -0.392 5.392 14 C -0.044 4.044 15 C 0.015 3.985 16 F -0.178 7.178 17 C -0.042 4.042 18 H 0.079 0.921 19 H 0.109 0.891 20 H 0.109 0.891 21 H 0.113 0.887 22 H 0.110 0.890 23 H 0.145 0.855 24 H 0.108 0.892 25 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.907 -12.736 0.912 15.019 hybrid contribution 2.064 1.211 -0.149 2.397 sum 9.971 -11.525 0.763 15.259 Atomic orbital electron populations 1.70013 1.05972 1.27551 1.46682 1.24999 0.95046 0.99070 0.94441 0.86146 0.79399 0.81445 0.78383 1.20235 1.20702 1.19660 1.22851 0.94917 0.91493 1.59205 0.90853 1.85423 1.04701 0.96390 1.96747 1.23486 1.06693 0.94296 1.05074 1.19959 0.85142 0.84716 0.74500 1.90731 1.14660 1.84727 1.47968 1.49339 1.07616 1.05918 1.76281 1.23616 0.83199 0.95818 1.01798 1.23508 0.89710 0.85248 1.00030 1.92826 1.73067 1.61266 1.90614 1.23500 0.97189 0.81880 1.01614 0.92112 0.89109 0.89080 0.88687 0.88964 0.85527 0.89238 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.03 13.22 55.49 0.73 -25.30 15 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 15 3 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 15 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 5 H -0.28 -6.40 7.11 56.52 0.40 -5.99 15 6 H -0.27 -6.09 7.11 56.52 0.40 -5.68 15 7 C -0.54 -15.21 9.50 30.94 0.29 -14.92 15 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 15 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 15 10 C -0.15 -2.96 5.98 36.00 0.22 -2.74 15 11 C 0.57 10.95 8.10 -10.99 -0.09 10.86 15 12 O -0.51 -11.87 16.64 5.56 0.09 -11.78 15 13 N -0.65 -9.23 3.69 -185.08 -0.68 -9.92 15 14 C 0.08 0.78 8.34 -8.37 -0.07 0.71 15 15 C 0.05 0.45 6.05 -26.07 -0.16 0.29 15 16 F -0.20 -1.91 17.45 2.25 0.04 -1.87 15 17 C 0.08 0.89 8.51 -8.50 -0.07 0.82 15 18 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15 19 H 0.09 1.72 8.14 -51.92 -0.42 1.30 15 20 H 0.09 1.70 8.14 -51.92 -0.42 1.28 15 21 H 0.10 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.09 0.79 8.14 -51.93 -0.42 0.37 15 23 H 0.13 0.90 8.14 -51.93 -0.42 0.47 15 24 H 0.09 0.96 8.14 -51.93 -0.42 0.53 15 25 H 0.09 0.91 8.14 -51.93 -0.42 0.48 15 LS Contribution 247.52 15.07 3.73 3.73 Total: -1.00 -33.90 247.52 -5.80 -39.70 By element: Atomic # 1 Polarization: -1.49 SS G_CDS: -2.50 Total: -4.00 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 0.02 Total: -2.98 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.05 Total: -35.21 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -33.90 -5.80 -39.70 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393356264.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.537 kcal (2) G-P(sol) polarization free energy of solvation -33.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds