Wall clock time and date at job start Sun Mar 29 2020 21:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99674 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99905 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99995 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05814 * 359.63188 * 13 11 10 15 15 C 1.53760 * 87.88929 * 152.95955 * 14 13 11 16 16 F 1.39897 * 114.26715 * 139.79176 * 15 14 13 17 17 C 1.47065 * 136.05752 * 180.02562 * 13 11 10 18 18 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 20 20 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 21 21 H 1.09001 * 113.47005 * 267.69331 * 14 13 11 22 22 H 1.09003 * 113.46723 * 38.13512 * 14 13 11 23 23 H 1.09001 * 114.39663 * 272.68097 * 15 14 13 24 24 H 1.09001 * 113.46952 * 321.86856 * 17 13 11 25 25 H 1.09004 * 113.46955 * 92.25117 * 17 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 8 0.7913 -5.5023 -0.0037 13 7 2.8443 -6.3430 -0.0136 14 6 4.3052 -6.5116 -0.0271 15 6 4.0986 -7.8632 0.6762 16 9 4.9349 -8.8853 0.2146 17 6 2.7297 -7.8092 -0.0165 18 1 -0.4851 0.8400 -0.0004 19 1 3.1212 -3.7293 -0.8992 20 1 3.1279 -3.7332 0.8807 21 1 4.7224 -6.6035 -1.0299 22 1 4.8324 -5.7788 0.5838 23 1 4.0523 -7.8025 1.7636 24 1 1.9144 -8.1821 0.6034 25 1 2.7309 -8.2427 -1.0166 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393356264.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:40 Heat of formation + Delta-G solvation = -70.056787 kcal Electronic energy + Delta-G solvation = -12267.676814 eV Core-core repulsion = 9708.466183 eV Total energy + Delta-G solvation = -2559.210631 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 219.047 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.67708 -41.13983 -38.68924 -34.60617 -32.06185 -29.20537 -27.68579 -27.07996 -23.23654 -20.54128 -19.60045 -18.20166 -18.00029 -17.14943 -16.89191 -16.52866 -16.05778 -15.78344 -15.40114 -14.62697 -14.28777 -14.01811 -13.61747 -13.38119 -13.17237 -12.90151 -12.65671 -12.54927 -11.76056 -11.50929 -11.15858 -11.09067 -10.32698 -9.94315 -8.71355 -8.36443 -6.15995 1.14041 1.39971 1.42444 1.45619 1.54669 1.87273 2.25357 2.89618 2.97960 3.14949 3.35991 3.64474 3.89659 4.09285 4.23351 4.35429 4.41559 4.48603 4.51134 4.71560 5.11443 5.40108 6.18002 6.42469 6.97094 7.04682 8.72870 Molecular weight = 219.05amu Principal moments of inertia in cm(-1) A = 0.064990 B = 0.005934 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.731832 B = 4717.780953 C = 5100.480615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 1.001 2.999 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.547 4.547 8 H 0.084 0.916 9 S -0.151 6.151 10 C -0.119 4.119 11 C 0.566 3.434 12 O -0.563 6.563 13 N -0.653 5.653 14 C 0.076 3.924 15 C 0.075 3.925 16 F -0.198 7.198 17 C 0.073 3.927 18 H 0.272 0.728 19 H 0.108 0.892 20 H 0.112 0.888 21 H 0.112 0.888 22 H 0.111 0.889 23 H 0.150 0.850 24 H 0.088 0.912 25 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.742 -13.021 1.108 18.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.695 4.695 8 H 0.102 0.898 9 S 0.076 5.924 10 C -0.270 4.270 11 C 0.356 3.644 12 O -0.441 6.441 13 N -0.390 5.390 14 C -0.047 4.047 15 C 0.039 3.961 16 F -0.179 7.179 17 C -0.050 4.050 18 H 0.081 0.919 19 H 0.126 0.874 20 H 0.130 0.870 21 H 0.130 0.870 22 H 0.129 0.871 23 H 0.167 0.833 24 H 0.107 0.893 25 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.689 -13.067 1.106 16.918 hybrid contribution 1.302 1.114 -0.229 1.729 sum 11.991 -11.953 0.877 16.954 Atomic orbital electron populations 1.70180 1.08019 1.28709 1.47842 1.26152 0.95983 1.03382 0.93617 0.84925 0.78217 0.75840 0.78814 1.19310 1.20282 1.18054 1.23193 0.95384 0.91766 1.59131 0.89758 1.85613 1.10366 0.99345 1.97073 1.23273 1.03593 0.93352 1.06776 1.19613 0.84857 0.85309 0.74646 1.90706 1.16942 1.85494 1.50958 1.49182 1.09520 1.06448 1.73809 1.23972 0.80339 0.96890 1.03458 1.23354 0.87708 0.84329 1.00749 1.92836 1.72915 1.61318 1.90805 1.23820 0.98866 0.79489 1.02850 0.91923 0.87404 0.87027 0.87023 0.87099 0.83295 0.89312 0.87784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.81 13.22 21.65 0.29 -55.52 15 2 C 0.01 0.76 5.49 84.86 0.47 1.23 15 3 Si 1.00 43.16 29.55 68.60 2.03 45.18 15 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 15 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 15 6 H -0.26 -10.33 7.11 99.48 0.71 -9.63 15 7 C -0.55 -31.07 9.50 67.95 0.65 -30.43 15 8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 15 9 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 15 10 C -0.12 -4.75 5.98 71.24 0.43 -4.33 15 11 C 0.57 21.60 8.10 87.66 0.71 22.31 15 12 O -0.56 -26.99 16.64 -3.02 -0.05 -27.04 15 13 N -0.65 -17.14 3.69 -857.86 -3.16 -20.30 15 14 C 0.08 1.21 8.34 83.26 0.69 1.90 15 15 C 0.08 1.04 6.05 31.03 0.19 1.22 15 16 F -0.20 -3.13 17.45 44.97 0.78 -2.35 15 17 C 0.07 1.41 8.51 83.18 0.71 2.12 15 18 H 0.27 15.42 8.31 -92.71 -0.77 14.65 15 19 H 0.11 3.91 8.14 -2.39 -0.02 3.89 15 20 H 0.11 3.97 8.14 -2.40 -0.02 3.95 15 21 H 0.11 1.49 8.14 -2.39 -0.02 1.47 15 22 H 0.11 1.43 8.14 -2.39 -0.02 1.41 15 23 H 0.15 1.49 8.14 -2.39 -0.02 1.47 15 24 H 0.09 1.76 8.14 -2.39 -0.02 1.74 15 25 H 0.10 1.80 8.14 -2.39 -0.02 1.78 15 Total: -1.00 -75.56 247.52 3.75 -71.81 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: 1.19 Total: 3.78 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 3.84 Total: -5.98 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -2.88 Total: -75.82 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.05 Total: -27.04 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.78 Total: -2.35 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -75.56 3.75 -71.81 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393356264.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.751 kcal (2) G-P(sol) polarization free energy of solvation -75.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds