Wall clock time and date at job start Sun Mar 29 2020 22:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99968 * 2 1 4 4 H 1.48498 * 109.46915 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47277 * 300.00434 * 3 2 1 6 6 H 1.48499 * 109.46998 * 60.00601 * 3 2 1 7 7 C 1.37881 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99648 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00304 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47397 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00116 * 180.02562 * 10 9 7 12 12 H 1.08992 * 109.47259 * 325.00252 * 11 10 9 13 13 C 1.52996 * 109.46973 * 204.99731 * 11 10 9 14 14 C 1.53000 * 109.47328 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47060 * 60.00126 * 14 13 11 16 16 C 1.53006 * 109.47127 * 300.00449 * 15 14 13 17 17 F 1.39900 * 109.46764 * 299.99647 * 16 15 14 18 18 F 1.39903 * 109.46814 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47164 * 59.99836 * 16 15 14 20 20 H 0.96998 * 120.00262 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.47040 * 60.00126 * 9 7 2 22 22 H 1.09003 * 109.47432 * 300.00175 * 9 7 2 23 23 H 1.00907 * 110.99841 * 303.95286 * 10 9 7 24 24 H 1.09004 * 109.47368 * 60.00191 * 13 11 10 25 25 H 1.09001 * 109.47372 * 300.00346 * 13 11 10 26 26 H 1.09002 * 109.47398 * 180.02562 * 14 13 11 27 27 H 1.09001 * 109.47194 * 300.00476 * 14 13 11 28 28 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 29 29 H 1.08996 * 109.47853 * 180.02562 * 15 14 13 30 30 H 1.09002 * 109.47045 * 180.02562 * 19 16 15 31 31 H 1.09001 * 109.47375 * 59.99966 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 1 0.5919 -4.8253 0.5879 13 6 2.4112 -5.9788 0.6084 14 6 1.6816 -7.3236 0.6084 15 6 1.3279 -7.7119 -0.8286 16 6 0.4220 -6.6401 -1.4383 17 9 -0.7501 -6.5348 -0.6817 18 9 0.0982 -6.9955 -2.7521 19 6 1.1516 -5.2953 -1.4382 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8405 -3.5487 -0.7820 24 1 2.6628 -5.7024 1.6324 25 1 3.3246 -6.0605 0.0193 26 1 2.3268 -8.0871 1.0431 27 1 0.7684 -7.2416 1.1978 28 1 2.2411 -7.7939 -1.4181 29 1 0.8078 -8.6697 -0.8287 30 1 0.5061 -4.5317 -1.8721 31 1 2.0649 -5.3774 -2.0276 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591756764.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:29 Heat of formation + Delta-G solvation = -145.122859 kcal Electronic energy + Delta-G solvation = -15325.466147 eV Core-core repulsion = 12468.453420 eV Total energy + Delta-G solvation = -2857.012727 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.01066 -48.01600 -39.36642 -36.07132 -34.31937 -31.19968 -30.59131 -27.80160 -24.33758 -23.57673 -22.72635 -21.09040 -18.77213 -18.14083 -17.78093 -17.37460 -16.70566 -16.05314 -15.48053 -15.31558 -15.06118 -14.69691 -14.36551 -14.25248 -13.90106 -13.59861 -13.44631 -13.24143 -12.92813 -12.72112 -12.56487 -12.18721 -12.08007 -11.75061 -11.61253 -11.44393 -11.03328 -10.69835 -9.19200 -8.24492 -6.36495 1.40723 1.41472 1.55511 2.38578 2.76577 3.07902 3.09560 3.32097 3.34016 3.66235 3.92407 4.15095 4.18779 4.31915 4.35100 4.50966 4.80401 4.83218 4.90724 4.94463 5.06330 5.16240 5.24569 5.36940 5.42393 5.60783 5.99119 6.39052 6.68968 6.87218 7.35002 8.87410 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.047852 B = 0.006608 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.000683 B = 4236.507354 C = 4491.509380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.976 3.024 4 H -0.259 1.259 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.069 0.931 9 C 0.208 3.792 10 N -0.675 5.675 11 C 0.088 3.912 12 H 0.050 0.950 13 C -0.103 4.103 14 C -0.113 4.113 15 C -0.146 4.146 16 C 0.283 3.717 17 F -0.216 7.216 18 F -0.214 7.214 19 C -0.184 4.184 20 H 0.265 0.735 21 H -0.040 1.040 22 H -0.005 1.005 23 H 0.339 0.661 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.059 0.941 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.052 0.948 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.130 -15.448 -1.633 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.800 3.200 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.574 4.574 8 H 0.087 0.913 9 C 0.080 3.920 10 N -0.304 5.304 11 C -0.023 4.023 12 H 0.069 0.931 13 C -0.141 4.141 14 C -0.150 4.150 15 C -0.183 4.183 16 C 0.246 3.754 17 F -0.197 7.197 18 F -0.195 7.195 19 C -0.224 4.224 20 H 0.074 0.926 21 H -0.022 1.022 22 H 0.013 0.987 23 H 0.157 0.843 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.129 0.871 27 H 0.078 0.922 28 H 0.135 0.865 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.038 -15.315 -0.949 16.150 hybrid contribution -0.917 1.196 -1.108 1.870 sum 4.122 -14.119 -2.057 14.851 Atomic orbital electron populations 1.70113 1.07967 1.27991 1.51541 1.26015 0.95779 1.03625 0.94541 0.85238 0.79018 0.78059 0.77694 1.18322 1.20399 1.20428 1.21597 0.93968 0.91291 1.50547 0.91327 1.19227 0.90688 0.89120 0.92969 1.60713 1.19745 1.00846 1.49100 1.21613 0.97174 0.90926 0.92594 0.93124 1.21560 0.98225 0.92341 1.01955 1.21523 1.01474 0.97489 0.94552 1.22550 1.00318 0.96785 0.98690 1.21510 0.81898 0.98116 0.73827 1.92958 1.52892 1.97365 1.76525 1.92968 1.93967 1.93393 1.39167 1.23295 1.02477 0.94830 1.01782 0.92633 1.02244 0.98689 0.84311 0.91026 0.89809 0.87118 0.92183 0.86539 0.88073 0.92895 0.86750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.54 13.29 21.45 0.28 -57.25 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.98 44.44 29.54 68.60 2.03 46.46 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.54 -30.70 9.32 25.60 0.24 -30.46 16 8 H 0.07 3.77 7.81 -2.91 -0.02 3.75 16 9 C 0.21 11.28 5.24 85.55 0.45 11.73 16 10 N -0.67 -28.31 6.24 -495.60 -3.09 -31.40 16 11 C 0.09 3.01 2.35 44.92 0.11 3.11 16 12 H 0.05 2.02 7.46 -2.39 -0.02 2.00 16 13 C -0.10 -2.52 5.53 30.59 0.17 -2.35 16 14 C -0.11 -2.13 5.80 30.59 0.18 -1.95 16 15 C -0.15 -2.74 5.45 30.60 0.17 -2.57 16 16 C 0.28 7.94 2.10 30.60 0.06 8.01 16 17 F -0.22 -7.22 16.02 44.97 0.72 -6.50 16 18 F -0.21 -6.36 17.06 44.97 0.77 -5.59 16 19 C -0.18 -5.76 4.71 30.59 0.14 -5.62 16 20 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 21 H -0.04 -2.35 7.44 -2.39 -0.02 -2.37 16 22 H -0.01 -0.30 8.06 -2.39 -0.02 -0.32 16 23 H 0.34 13.13 8.46 -89.69 -0.76 12.37 16 24 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 1.30 7.80 -2.39 -0.02 1.29 16 28 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.05 2.01 7.45 -2.39 -0.02 1.99 16 31 H 0.11 2.98 8.13 -2.39 -0.02 2.96 16 Total: -1.00 -66.54 261.05 3.04 -63.49 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.36 Total: 10.52 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 1.98 Total: -19.74 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -2.81 Total: -88.65 kcal Atomic # 9 Polarization: -13.58 SS G_CDS: 1.49 Total: -12.09 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -66.54 3.04 -63.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591756764.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.629 kcal (2) G-P(sol) polarization free energy of solvation -66.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds