Wall clock time and date at job start Sun Mar 29 2020 21:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.36820 * 121.08762 * 166.22288 * 3 2 1 5 5 N 1.36002 * 119.01584 * 180.27338 * 4 3 2 6 6 H 0.97006 * 119.28134 * 179.68361 * 5 4 3 7 7 C 1.35434 * 121.43758 * 359.70308 * 5 4 3 8 8 N 1.30157 * 122.46670 * 0.02562 * 7 5 4 9 9 C 1.35356 * 120.73152 * 359.97438 * 8 7 5 10 10 N 1.31530 * 120.73742 * 180.02562 * 9 8 7 11 11 C 1.46505 * 119.99830 * 0.02562 * 10 9 8 12 12 C 1.52997 * 109.47212 * 119.99706 * 11 10 9 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46616 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47104 * 119.99966 * 17 15 13 20 20 H 1.48489 * 109.47200 * 240.00246 * 17 15 13 21 21 H 1.08007 * 120.49091 * 359.97438 * 4 3 2 22 22 H 1.08004 * 118.76958 * 179.97438 * 7 5 4 23 23 H 1.09002 * 109.47068 * 239.99766 * 11 10 9 24 24 H 1.09001 * 109.47372 * 359.97438 * 11 10 9 25 25 H 1.09002 * 109.47153 * 300.00008 * 12 11 10 26 26 H 1.08998 * 109.47533 * 59.99637 * 12 11 10 27 27 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2740 1.1389 -0.2790 5 7 4.6332 1.0905 -0.2728 6 1 5.1375 1.8941 -0.4747 7 6 5.2978 -0.0555 0.0086 8 7 4.6840 -1.1689 0.2870 9 6 3.3318 -1.2270 0.3071 10 7 2.7113 -2.3520 0.5889 11 6 3.4845 -3.5604 0.8860 12 6 3.1458 -4.0488 2.2958 13 6 3.9406 -5.2922 2.6012 14 1 4.6198 -5.6936 1.8637 15 6 3.8016 -5.9167 3.8225 16 7 2.9749 -5.4275 4.7208 17 14 4.7863 -7.4583 4.2008 18 1 5.6368 -7.8013 3.0329 19 1 5.6478 -7.2170 5.3861 20 1 3.8576 -8.5817 4.4844 21 1 2.7595 2.0612 -0.5057 22 1 6.3778 -0.0453 0.0010 23 1 3.2364 -4.3374 0.1629 24 1 4.5492 -3.3346 0.8253 25 1 3.3939 -3.2718 3.0189 26 1 2.0812 -4.2747 2.3561 27 1 2.8774 -5.8666 5.5802 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591930595.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:10 Heat of formation + Delta-G solvation = 89.049761 kcal Electronic energy + Delta-G solvation = -13308.144613 eV Core-core repulsion = 10873.861126 eV Total energy + Delta-G solvation = -2434.283487 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.74020 -36.43469 -35.93466 -33.52297 -32.74087 -31.59556 -28.92918 -25.17049 -24.87385 -22.40567 -20.46259 -20.13996 -17.87769 -17.32654 -16.36944 -15.49586 -15.14127 -14.39331 -14.18486 -13.79160 -13.18677 -13.05406 -12.79687 -12.45745 -12.11705 -11.84154 -11.16047 -10.90164 -10.56847 -10.23799 -10.12582 -9.84517 -9.42363 -9.11102 -8.53081 -8.22317 -7.35373 -5.89728 -3.92240 0.83196 1.40996 2.50672 3.01402 3.31110 3.37431 3.43912 3.48957 4.03742 4.07651 4.17092 4.34405 4.53928 4.80700 5.25820 5.45500 5.49339 5.91549 6.22265 6.67498 6.77560 6.89179 7.17623 7.77038 7.81387 7.94475 8.07785 8.12186 8.47859 8.62190 9.15163 9.70501 11.21822 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.038864 B = 0.006192 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.288242 B = 4520.724071 C = 5018.858125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.285 3.715 3 C -0.106 4.106 4 C 0.173 3.827 5 N -0.641 5.641 6 H 0.422 0.578 7 C 0.365 3.635 8 N -0.525 5.525 9 C 0.319 3.681 10 N -0.496 5.496 11 C 0.047 3.953 12 C 0.036 3.964 13 C -0.516 4.516 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.894 3.106 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.176 0.824 22 H 0.201 0.799 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.012 0.988 26 H 0.020 0.980 27 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.826 18.030 -11.472 22.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.031 4.031 3 C -0.123 4.123 4 C 0.041 3.959 5 N -0.260 5.260 6 H 0.259 0.741 7 C 0.067 3.933 8 N -0.246 5.246 9 C 0.038 3.962 10 N -0.212 5.212 11 C -0.081 4.081 12 C -0.001 4.001 13 C -0.555 4.555 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 H 0.193 0.807 22 H 0.218 0.782 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.031 0.969 26 H 0.038 0.962 27 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.307 16.429 -10.913 20.425 hybrid contribution 1.562 0.106 0.167 1.575 sum 6.869 16.536 -10.745 20.882 Atomic orbital electron populations 1.81187 1.11785 1.07487 1.09598 1.24665 0.91566 0.93481 0.93387 1.16625 0.85944 0.94174 1.15576 1.21830 0.83364 0.98171 0.92566 1.42171 1.05548 1.14108 1.64217 0.74119 1.24733 0.98998 0.80762 0.88824 1.69388 1.10951 1.23460 1.20763 1.20561 0.84488 0.92437 0.98712 1.73120 1.36816 0.99685 1.11608 1.22353 0.96501 0.88835 1.00452 1.19006 0.97328 0.95390 0.88402 1.21232 1.24118 1.10097 1.00016 0.92528 1.25026 0.95553 0.97605 0.96337 1.70011 1.36707 1.40227 1.06480 0.86506 0.79943 0.83175 0.78197 1.19692 1.21071 1.21041 0.80675 0.78222 0.91558 0.92606 0.96938 0.96167 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.67 18.54 41.84 0.78 -6.90 15 2 C 0.28 4.56 15.09 -22.47 -0.34 4.22 15 3 C -0.11 -1.43 5.91 -104.57 -0.62 -2.04 15 4 C 0.17 1.15 11.03 -16.22 -0.18 0.97 15 5 N -0.64 -2.65 5.26 -13.72 -0.07 -2.72 15 6 H 0.42 -0.38 8.90 -40.82 -0.36 -0.74 15 7 C 0.36 2.78 12.31 -90.30 -1.11 1.67 15 8 N -0.53 -7.93 8.84 -12.15 -0.11 -8.04 15 9 C 0.32 5.74 7.61 -155.63 -1.18 4.55 15 10 N -0.50 -11.40 10.17 -58.91 -0.60 -12.00 15 11 C 0.05 1.18 6.29 -4.04 -0.03 1.16 15 12 C 0.04 1.07 5.30 -27.89 -0.15 0.92 15 13 C -0.52 -15.70 9.11 -34.44 -0.31 -16.02 15 14 H 0.06 1.66 7.74 -52.49 -0.41 1.25 15 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 16 N -0.89 -28.61 13.29 55.43 0.74 -27.87 15 17 Si 0.89 22.62 29.54 -169.99 -5.02 17.60 15 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 15 19 H -0.28 -7.06 7.11 56.52 0.40 -6.66 15 20 H -0.28 -7.11 7.11 56.52 0.40 -6.71 15 21 H 0.18 0.39 8.06 -52.48 -0.42 -0.04 15 22 H 0.20 0.55 8.06 -52.48 -0.42 0.13 15 23 H 0.07 1.64 8.14 -51.93 -0.42 1.22 15 24 H 0.06 1.34 6.71 -51.93 -0.35 1.00 15 25 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 15 26 H 0.02 0.64 8.14 -51.93 -0.42 0.22 15 27 H 0.26 7.73 8.31 -40.82 -0.34 7.39 15 LS Contribution 257.25 15.07 3.88 3.88 Total: -1.00 -41.50 257.25 -6.79 -48.30 By element: Atomic # 1 Polarization: -6.90 SS G_CDS: -2.37 Total: -9.27 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -4.02 Total: -2.98 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.73 Total: -57.53 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -41.50 -6.79 -48.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591930595.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.347 kcal (2) G-P(sol) polarization free energy of solvation -41.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds