Wall clock time and date at job start Sun Mar 29 2020 21:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99875 * 2 1 4 4 H 1.48497 * 109.47418 * 270.00040 * 3 2 1 5 5 H 1.48495 * 109.46957 * 30.00407 * 3 2 1 6 6 H 1.48501 * 109.46984 * 150.00060 * 3 2 1 7 7 C 1.38807 * 120.00319 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00583 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99626 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.65225 * 359.97201 * 9 7 2 11 11 C 1.54906 * 104.83815 * 204.15014 * 10 9 7 12 12 C 1.55157 * 101.57850 * 322.99441 * 11 10 9 13 13 C 1.47027 * 125.64697 * 180.02562 * 9 7 2 14 14 H 1.09002 * 109.88429 * 59.50131 * 13 9 7 15 15 C 1.50701 * 110.01033 * 298.40583 * 13 9 7 16 16 C 1.38226 * 119.61474 * 6.53220 * 15 13 9 17 17 C 1.38638 * 119.15632 * 179.71294 * 16 15 13 18 18 C 1.38667 * 118.42223 * 0.54234 * 17 16 15 19 19 C 1.38183 * 119.16144 * 359.73831 * 18 17 16 20 20 N 1.31847 * 119.62031 * 186.80042 * 15 13 9 21 21 H 0.96997 * 119.99784 * 0.02562 * 1 2 3 22 22 H 1.09009 * 110.35863 * 85.31284 * 10 9 7 23 23 H 1.08994 * 110.36625 * 322.99670 * 10 9 7 24 24 H 1.08994 * 111.00476 * 204.92106 * 11 10 9 25 25 H 1.09001 * 110.99920 * 81.06228 * 11 10 9 26 26 H 1.09003 * 110.72490 * 277.13366 * 12 11 10 27 27 H 1.09007 * 110.72100 * 153.85973 * 12 11 10 28 28 H 1.07998 * 120.42309 * 359.97306 * 16 15 13 29 29 H 1.07997 * 120.78848 * 180.25774 * 17 16 15 30 30 H 1.07998 * 120.41705 * 179.71303 * 18 17 16 31 31 H 1.08003 * 119.61367 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1415 -2.5332 0.0006 11 6 -0.4012 -3.9322 0.6128 12 6 0.7785 -4.7523 0.0270 13 6 1.9319 -3.7274 -0.0005 14 1 2.5587 -3.8507 0.8827 15 6 2.7582 -3.9195 -1.2461 16 6 2.9568 -2.8548 -2.1050 17 6 3.7235 -3.0405 -3.2450 18 6 4.2548 -4.2986 -3.4853 19 6 4.0086 -5.3169 -2.5842 20 7 3.2790 -5.1024 -1.5067 21 1 -0.4850 0.8400 -0.0004 22 1 -0.5279 -2.4869 -1.0177 23 1 -0.5988 -1.7588 0.6163 24 1 -1.3587 -4.3327 0.2800 25 1 -0.3507 -3.8979 1.7011 26 1 0.5453 -5.0981 -0.9801 27 1 1.0246 -5.5922 0.6769 28 1 2.5236 -1.8894 -1.8885 29 1 3.8991 -2.2259 -3.9319 30 1 4.8530 -4.4804 -4.3659 31 1 4.4184 -6.2997 -2.7644 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610487430.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:41 Heat of formation + Delta-G solvation = 47.820237 kcal Electronic energy + Delta-G solvation = -14761.918082 eV Core-core repulsion = 12429.387092 eV Total energy + Delta-G solvation = -2332.530989 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.15144 -38.83057 -34.69519 -33.22778 -32.66531 -31.01583 -28.74370 -26.62366 -24.17746 -23.88297 -21.80443 -21.23950 -19.05078 -17.55633 -17.27077 -16.71519 -16.19800 -15.80091 -15.45955 -14.87795 -14.25488 -13.93814 -13.76584 -13.63213 -13.33880 -12.93355 -12.73971 -12.57646 -12.02785 -12.00353 -11.75054 -11.51653 -11.36949 -10.73907 -10.65307 -10.21749 -9.67854 -8.91042 -7.77768 -5.22434 0.35766 0.50638 1.46375 1.47281 1.56137 2.46973 3.01114 3.23026 3.45159 3.78425 4.05513 4.11051 4.12575 4.27273 4.37177 4.41106 4.53910 4.70754 4.83884 4.96819 5.05314 5.11290 5.21882 5.30547 5.43877 5.50203 5.59170 5.67175 5.82266 6.00553 6.31034 7.09923 7.20911 7.76320 8.41214 9.23567 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.026336 B = 0.012084 C = 0.008857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.918604 B = 2316.626034 C = 3160.530767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.059 4.059 3 Si 0.972 3.028 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.272 1.272 7 C -0.226 4.226 8 H 0.076 0.924 9 N -0.608 5.608 10 C 0.154 3.846 11 C -0.135 4.135 12 C -0.094 4.094 13 C 0.197 3.803 14 H 0.044 0.956 15 C 0.104 3.896 16 C -0.180 4.180 17 C -0.093 4.093 18 C -0.177 4.177 19 C 0.079 3.921 20 N -0.504 5.504 21 H 0.248 0.752 22 H -0.015 1.015 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.138 0.862 29 H 0.146 0.854 30 H 0.167 0.833 31 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.333 -8.460 -4.785 11.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.252 4.252 3 Si 0.800 3.200 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.197 1.197 7 C -0.354 4.354 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.029 3.971 11 C -0.173 4.173 12 C -0.133 4.133 13 C 0.089 3.911 14 H 0.061 0.939 15 C -0.035 4.035 16 C -0.200 4.200 17 C -0.119 4.119 18 C -0.196 4.196 19 C -0.078 4.078 20 N -0.215 5.215 21 H 0.058 0.942 22 H 0.003 0.997 23 H 0.096 0.904 24 H 0.102 0.898 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.107 0.893 28 H 0.155 0.845 29 H 0.164 0.836 30 H 0.185 0.815 31 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 5.132 -8.901 -4.176 11.091 hybrid contribution 0.413 1.917 -0.669 2.072 sum 5.546 -6.985 -4.845 10.150 Atomic orbital electron populations 1.70048 1.06073 1.25056 1.57971 1.25532 0.96494 1.00547 1.02643 0.85177 0.77674 0.79578 0.77563 1.21161 1.21960 1.19746 1.19181 0.90620 0.83298 1.42332 0.90599 1.44800 1.02497 0.99981 1.85901 1.21757 0.83696 0.95195 0.96438 1.22927 0.98152 0.96016 1.00227 1.22324 0.93643 0.96495 1.00803 1.19883 0.93366 0.86371 0.91469 0.93867 1.22263 0.95141 0.88798 0.97271 1.22752 0.99353 1.02264 0.95582 1.21947 0.95062 0.98724 0.96197 1.22416 1.01941 0.93197 1.02063 1.23304 0.94346 1.00690 0.89494 1.67434 1.09946 1.23182 1.20902 0.94218 0.99735 0.90398 0.89826 0.91336 0.92465 0.89258 0.84457 0.83646 0.81531 0.79801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.92 10.09 21.65 0.22 -54.70 16 2 C -0.06 -3.26 5.49 84.86 0.47 -2.79 16 3 Si 0.97 44.83 29.55 68.60 2.03 46.86 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.23 -12.30 7.24 84.03 0.61 -11.69 16 8 H 0.08 4.07 7.52 -2.91 -0.02 4.05 16 9 N -0.61 -31.06 2.72 -672.38 -1.83 -32.88 16 10 C 0.15 7.65 5.89 86.85 0.51 8.16 16 11 C -0.13 -5.15 7.08 31.99 0.23 -4.93 16 12 C -0.09 -3.51 6.29 31.78 0.20 -3.31 16 13 C 0.20 8.67 3.60 44.59 0.16 8.84 16 14 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 15 C 0.10 4.34 6.01 42.55 0.26 4.59 16 16 C -0.18 -7.57 8.80 22.36 0.20 -7.37 16 17 C -0.09 -3.06 10.18 22.47 0.23 -2.83 16 18 C -0.18 -4.69 10.11 22.36 0.23 -4.46 16 19 C 0.08 2.27 11.18 84.67 0.95 3.22 16 20 N -0.50 -18.51 10.05 -183.89 -1.85 -20.36 16 21 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 22 H -0.02 -0.83 8.14 -2.38 -0.02 -0.85 16 23 H 0.08 4.35 5.87 -2.39 -0.01 4.33 16 24 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 25 H 0.07 2.51 8.14 -2.39 -0.02 2.50 16 26 H 0.06 2.14 7.85 -2.39 -0.02 2.12 16 27 H 0.09 2.86 8.14 -2.38 -0.02 2.84 16 28 H 0.14 6.76 4.88 -2.91 -0.01 6.75 16 29 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 30 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 31 H 0.19 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -63.57 254.90 3.71 -59.86 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 1.11 Total: 13.80 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 4.03 Total: -12.58 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -3.46 Total: -107.95 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -63.57 3.71 -59.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610487430.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.680 kcal (2) G-P(sol) polarization free energy of solvation -63.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds