Wall clock time and date at job start Sun Mar 29 2020 21:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86807 * 119.99862 * 2 1 4 4 H 1.48509 * 109.46767 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47333 * 299.99826 * 3 2 1 6 6 H 1.48497 * 109.47266 * 60.00151 * 3 2 1 7 7 C 1.38806 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00152 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99881 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99823 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47254 * 324.99360 * 10 9 7 12 12 C 1.50703 * 109.46682 * 204.99593 * 10 9 7 13 13 C 1.38654 * 120.78409 * 139.99839 * 12 10 9 14 14 C 1.38209 * 119.15786 * 180.02562 * 13 12 10 15 15 N 1.31870 * 120.76375 * 0.26353 * 14 13 12 16 16 C 1.31872 * 121.72489 * 359.46946 * 15 14 13 17 17 C 1.38200 * 120.76402 * 0.52682 * 16 15 14 18 18 C 1.53000 * 109.47139 * 84.99702 * 10 9 7 19 19 C 1.52995 * 117.50070 * 8.62094 * 18 10 9 20 20 C 1.52996 * 60.00229 * 252.50986 * 19 18 10 21 21 H 0.97009 * 120.00135 * 0.02562 * 1 2 3 22 22 H 0.96999 * 120.00267 * 359.97438 * 9 7 2 23 23 H 1.07995 * 120.42251 * 0.04566 * 13 12 10 24 24 H 1.08002 * 119.61346 * 179.97438 * 14 13 12 25 25 H 1.08004 * 119.61160 * 180.27376 * 16 15 14 26 26 H 1.08003 * 120.41583 * 179.72635 * 17 16 15 27 27 H 1.08998 * 115.54447 * 154.32546 * 18 10 9 28 28 H 1.09005 * 117.49671 * 0.02562 * 19 18 10 29 29 H 1.09000 * 117.50090 * 145.01937 * 19 18 10 30 30 H 1.08995 * 117.49735 * 252.51475 * 20 19 18 31 31 H 1.08997 * 117.51796 * 107.47648 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9691 -3.5508 -0.5872 12 6 1.1944 -4.7359 -0.5989 13 6 1.7372 -5.6898 -1.4463 14 6 0.9141 -6.6640 -1.9787 15 7 -0.3731 -6.6895 -1.6932 16 6 -0.9223 -5.8017 -0.8875 17 6 -0.1619 -4.7981 -0.3178 18 6 2.4209 -4.0349 1.4391 19 6 1.8138 -3.1956 2.5651 20 6 3.2995 -3.0601 2.2257 21 1 -0.4851 0.8401 -0.0004 22 1 0.3555 -2.3880 0.0005 23 1 2.7898 -5.6718 -1.6870 24 1 1.3290 -7.4104 -2.6399 25 1 -1.9795 -5.8571 -0.6735 26 1 -0.6184 -4.0713 0.3378 27 1 2.5605 -5.1000 1.6240 28 1 1.1555 -2.3742 2.2818 29 1 1.5538 -3.7084 3.4911 30 1 4.0169 -3.4839 2.9284 31 1 3.6193 -2.1496 1.7190 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934684579.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:04 Heat of formation + Delta-G solvation = 72.930185 kcal Electronic energy + Delta-G solvation = -14405.159911 eV Core-core repulsion = 12073.717770 eV Total energy + Delta-G solvation = -2331.442140 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.85743 -37.40723 -33.72214 -32.60911 -30.86033 -30.06948 -26.45669 -23.63782 -22.76382 -22.00863 -21.49924 -19.20183 -17.54241 -16.29018 -15.72432 -15.25181 -14.77722 -14.52469 -13.98304 -13.50392 -13.30142 -13.05737 -12.73134 -11.89545 -11.30969 -11.16526 -10.99020 -10.91356 -10.60754 -10.15542 -9.79970 -9.65759 -9.32091 -9.12767 -9.05837 -8.88204 -8.78004 -7.09164 -5.86270 -3.15583 1.50650 1.67845 3.37960 3.44023 3.45966 4.19160 4.45519 4.60859 4.76709 5.11991 5.18200 5.44264 5.48646 5.56728 5.64055 5.76629 5.82595 5.87179 6.04197 6.09660 6.31638 6.35341 6.44507 6.48053 6.66680 6.93136 6.97479 7.09036 7.23839 7.63501 8.29041 8.31289 9.43294 9.96209 10.32240 11.35795 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.032018 B = 0.008883 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.285617 B = 3151.222089 C = 3541.239560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.073 0.927 9 N -0.714 5.714 10 C 0.236 3.764 11 H 0.063 0.937 12 C -0.020 4.020 13 C -0.173 4.173 14 C 0.088 3.912 15 N -0.499 5.499 16 C 0.091 3.909 17 C -0.153 4.153 18 C -0.175 4.175 19 C -0.162 4.162 20 C -0.175 4.175 21 H 0.256 0.744 22 H 0.386 0.614 23 H 0.130 0.870 24 H 0.148 0.852 25 H 0.150 0.850 26 H 0.137 0.863 27 H 0.083 0.917 28 H 0.119 0.881 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.872 -9.755 0.746 10.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.356 5.356 10 C 0.126 3.874 11 H 0.081 0.919 12 C -0.029 4.029 13 C -0.193 4.193 14 C -0.068 4.068 15 N -0.209 5.209 16 C -0.065 4.065 17 C -0.173 4.173 18 C -0.196 4.196 19 C -0.200 4.200 20 C -0.212 4.212 21 H 0.066 0.934 22 H 0.222 0.778 23 H 0.148 0.852 24 H 0.166 0.834 25 H 0.168 0.832 26 H 0.155 0.845 27 H 0.101 0.899 28 H 0.137 0.863 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.460 -10.229 0.360 10.526 hybrid contribution 0.701 1.611 0.427 1.808 sum 3.161 -8.617 0.787 9.213 Atomic orbital electron populations 1.69659 1.05085 1.25732 1.57180 1.24725 0.95491 0.97649 1.02698 0.86155 0.78856 0.84183 0.77224 1.20501 1.21872 1.21799 1.19225 0.91020 0.83697 1.43040 0.90882 1.42506 1.05841 0.99242 1.88001 1.18721 0.92986 0.84268 0.91418 0.91927 1.20769 0.94663 0.94491 0.92999 1.22002 1.01340 0.96581 0.99425 1.22589 0.89391 0.97104 0.97762 1.67599 1.13101 1.25887 1.14322 1.22670 1.00032 0.90826 0.92994 1.22044 0.94495 0.99434 1.01322 1.23116 1.06104 0.95191 0.95228 1.22906 0.96798 1.03459 0.96789 1.22864 0.93485 1.01896 1.02965 0.93426 0.77824 0.85210 0.83426 0.83234 0.84515 0.89858 0.86274 0.91250 0.90924 0.87833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.77 13.06 55.49 0.72 -26.05 16 2 C -0.01 -0.25 5.50 -17.44 -0.10 -0.35 16 3 Si 0.90 21.67 29.55 -169.99 -5.02 16.65 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 7 C -0.24 -6.17 8.15 -15.06 -0.12 -6.30 16 8 H 0.07 1.85 6.91 -52.48 -0.36 1.49 16 9 N -0.71 -16.66 3.60 -54.54 -0.20 -16.86 16 10 C 0.24 4.56 2.94 -69.08 -0.20 4.36 16 11 H 0.06 1.23 7.98 -51.93 -0.41 0.82 16 12 C -0.02 -0.35 4.96 -104.32 -0.52 -0.87 16 13 C -0.17 -2.63 9.78 -39.44 -0.39 -3.02 16 14 C 0.09 1.29 11.18 -17.55 -0.20 1.09 16 15 N -0.50 -8.11 10.36 -13.25 -0.14 -8.24 16 16 C 0.09 1.44 11.18 -17.55 -0.20 1.24 16 17 C -0.15 -2.63 9.15 -39.45 -0.36 -2.99 16 18 C -0.17 -3.11 5.69 -90.62 -0.52 -3.63 16 19 C -0.16 -3.03 9.74 -26.74 -0.26 -3.29 16 20 C -0.18 -3.14 9.86 -26.73 -0.26 -3.40 16 21 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 22 H 0.39 9.61 6.15 -40.82 -0.25 9.36 16 23 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 24 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 25 H 0.15 1.95 8.06 -52.48 -0.42 1.53 16 26 H 0.14 2.42 7.01 -52.48 -0.37 2.05 16 27 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 28 H 0.12 2.65 6.68 -51.93 -0.35 2.30 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.10 2.07 6.23 -51.93 -0.32 1.74 16 LS Contribution 263.87 15.07 3.98 3.98 Total: -1.00 -28.57 263.87 -7.51 -36.08 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -3.74 Total: 11.59 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -3.12 Total: -17.14 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.39 Total: -51.15 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.57 -7.51 -36.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934684579.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.012 kcal (2) G-P(sol) polarization free energy of solvation -28.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds