Wall clock time and date at job start Sun Mar 29 2020 21:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86807 * 119.99862 * 2 1 4 4 H 1.48509 * 109.46767 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47333 * 299.99826 * 3 2 1 6 6 H 1.48497 * 109.47266 * 60.00151 * 3 2 1 7 7 C 1.38806 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00152 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99881 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99823 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47254 * 324.99360 * 10 9 7 12 12 C 1.50703 * 109.46682 * 204.99593 * 10 9 7 13 13 C 1.38654 * 120.78409 * 139.99839 * 12 10 9 14 14 C 1.38209 * 119.15786 * 180.02562 * 13 12 10 15 15 N 1.31870 * 120.76375 * 0.26353 * 14 13 12 16 16 C 1.31872 * 121.72489 * 359.46946 * 15 14 13 17 17 C 1.38200 * 120.76402 * 0.52682 * 16 15 14 18 18 C 1.53000 * 109.47139 * 84.99702 * 10 9 7 19 19 C 1.52995 * 117.50070 * 8.62094 * 18 10 9 20 20 C 1.52996 * 60.00229 * 252.50986 * 19 18 10 21 21 H 0.97009 * 120.00135 * 0.02562 * 1 2 3 22 22 H 0.96999 * 120.00267 * 359.97438 * 9 7 2 23 23 H 1.07995 * 120.42251 * 0.04566 * 13 12 10 24 24 H 1.08002 * 119.61346 * 179.97438 * 14 13 12 25 25 H 1.08004 * 119.61160 * 180.27376 * 16 15 14 26 26 H 1.08003 * 120.41583 * 179.72635 * 17 16 15 27 27 H 1.08998 * 115.54447 * 154.32546 * 18 10 9 28 28 H 1.09005 * 117.49671 * 0.02562 * 19 18 10 29 29 H 1.09000 * 117.50090 * 145.01937 * 19 18 10 30 30 H 1.08995 * 117.49735 * 252.51475 * 20 19 18 31 31 H 1.08997 * 117.51796 * 107.47648 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9691 -3.5508 -0.5872 12 6 1.1944 -4.7359 -0.5989 13 6 1.7372 -5.6898 -1.4463 14 6 0.9141 -6.6640 -1.9787 15 7 -0.3731 -6.6895 -1.6932 16 6 -0.9223 -5.8017 -0.8875 17 6 -0.1619 -4.7981 -0.3178 18 6 2.4209 -4.0349 1.4391 19 6 1.8138 -3.1956 2.5651 20 6 3.2995 -3.0601 2.2257 21 1 -0.4851 0.8401 -0.0004 22 1 0.3555 -2.3880 0.0005 23 1 2.7898 -5.6718 -1.6870 24 1 1.3290 -7.4104 -2.6399 25 1 -1.9795 -5.8571 -0.6735 26 1 -0.6184 -4.0713 0.3378 27 1 2.5605 -5.1000 1.6240 28 1 1.1555 -2.3742 2.2818 29 1 1.5538 -3.7084 3.4911 30 1 4.0169 -3.4839 2.9284 31 1 3.6193 -2.1496 1.7190 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934684579.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:03 Heat of formation + Delta-G solvation = 56.501475 kcal Electronic energy + Delta-G solvation = -14405.872313 eV Core-core repulsion = 12073.717770 eV Total energy + Delta-G solvation = -2332.154543 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.13556 -38.91270 -35.42727 -34.19725 -32.13994 -31.78335 -28.08307 -25.38367 -24.14271 -23.35217 -22.95921 -20.70148 -19.38444 -17.72861 -17.09956 -16.51855 -16.46076 -16.05963 -15.54824 -15.17421 -14.68796 -14.40045 -14.26922 -13.47046 -12.93539 -12.86891 -12.80020 -12.40999 -12.16128 -12.01015 -11.68531 -11.10767 -11.08612 -10.71317 -10.38135 -10.29954 -9.98876 -9.03594 -7.93138 -5.20787 0.29775 0.38828 1.46589 1.47850 1.56195 2.55056 2.95695 3.08792 3.42326 3.65098 3.75363 3.88891 4.09503 4.20001 4.30426 4.34895 4.37882 4.46162 4.78015 4.81734 4.85984 4.93638 5.02958 5.14000 5.23661 5.41069 5.55763 5.64847 5.65561 5.86937 6.27951 7.08320 7.35654 8.06391 8.31747 9.30095 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.032018 B = 0.008883 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.285617 B = 3151.222089 C = 3541.239560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.299 1.299 6 H -0.297 1.297 7 C -0.223 4.223 8 H 0.078 0.922 9 N -0.723 5.723 10 C 0.234 3.766 11 H 0.061 0.939 12 C -0.038 4.038 13 C -0.170 4.170 14 C 0.092 3.908 15 N -0.512 5.512 16 C 0.090 3.910 17 C -0.168 4.168 18 C -0.163 4.163 19 C -0.170 4.170 20 C -0.170 4.170 21 H 0.249 0.751 22 H 0.376 0.624 23 H 0.155 0.845 24 H 0.186 0.814 25 H 0.172 0.828 26 H 0.121 0.879 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.338 -11.545 0.523 12.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.226 1.226 6 H -0.224 1.224 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.363 5.363 10 C 0.125 3.875 11 H 0.079 0.921 12 C -0.047 4.047 13 C -0.190 4.190 14 C -0.064 4.064 15 N -0.222 5.222 16 C -0.066 4.066 17 C -0.188 4.188 18 C -0.184 4.184 19 C -0.208 4.208 20 C -0.206 4.206 21 H 0.058 0.942 22 H 0.209 0.791 23 H 0.173 0.827 24 H 0.202 0.798 25 H 0.189 0.811 26 H 0.139 0.861 27 H 0.126 0.874 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.122 0.878 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.969 -12.058 0.139 12.695 hybrid contribution 0.278 2.039 0.480 2.113 sum 4.247 -10.019 0.620 10.900 Atomic orbital electron populations 1.69802 1.06417 1.25692 1.59817 1.25402 0.96190 1.00554 1.04213 0.85235 0.78487 0.80717 0.76346 1.18994 1.22613 1.22440 1.19510 0.91254 0.84608 1.40070 0.90453 1.42616 1.05486 1.00201 1.88023 1.18848 0.92803 0.83297 0.92549 0.92071 1.20694 0.94606 0.95048 0.94335 1.22264 1.02750 0.95753 0.98231 1.23201 0.88734 0.97260 0.97245 1.67697 1.14092 1.25956 1.14451 1.22967 1.01005 0.90139 0.92462 1.21997 0.94831 0.99942 1.02046 1.23012 1.05400 0.96294 0.93730 1.22763 0.96833 1.02932 0.98243 1.22867 0.93445 1.01110 1.03226 0.94244 0.79050 0.82703 0.79750 0.81137 0.86095 0.87431 0.90334 0.88965 0.87770 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.50 13.06 21.65 0.28 -57.22 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.96 45.26 29.55 68.60 2.03 47.29 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 7 C -0.22 -11.61 8.15 84.03 0.68 -10.93 16 8 H 0.08 3.90 6.91 -2.91 -0.02 3.88 16 9 N -0.72 -34.20 3.60 -326.48 -1.17 -35.37 16 10 C 0.23 8.83 2.94 44.24 0.13 8.96 16 11 H 0.06 2.32 7.98 -2.39 -0.02 2.30 16 12 C -0.04 -1.28 4.96 -19.67 -0.10 -1.38 16 13 C -0.17 -4.68 9.78 22.36 0.22 -4.47 16 14 C 0.09 2.39 11.18 84.68 0.95 3.33 16 15 N -0.51 -15.38 10.36 -195.84 -2.03 -17.41 16 16 C 0.09 2.73 11.18 84.68 0.95 3.68 16 17 C -0.17 -5.71 9.15 22.36 0.20 -5.51 16 18 C -0.16 -5.53 5.69 -10.79 -0.06 -5.59 16 19 C -0.17 -6.25 9.74 30.59 0.30 -5.95 16 20 C -0.17 -5.77 9.86 30.59 0.30 -5.47 16 21 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 22 H 0.38 19.35 6.15 -92.71 -0.57 18.78 16 23 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 24 H 0.19 3.32 8.06 -2.91 -0.02 3.30 16 25 H 0.17 4.24 8.06 -2.91 -0.02 4.22 16 26 H 0.12 4.44 7.01 -2.91 -0.02 4.42 16 27 H 0.11 3.17 8.11 -2.39 -0.02 3.15 16 28 H 0.08 3.59 6.68 -2.38 -0.02 3.57 16 29 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.08 3.10 6.23 -2.39 -0.01 3.09 16 Total: -1.00 -61.56 263.87 3.71 -57.85 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.56 Total: 31.67 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: 4.04 Total: -26.81 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -2.92 Total: -110.00 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -61.56 3.71 -57.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934684579.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.355 kcal (2) G-P(sol) polarization free energy of solvation -61.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds