Wall clock time and date at job start Sun Mar 29 2020 22:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00145 * 2 1 4 4 H 1.48496 * 109.46821 * 239.99921 * 3 2 1 5 5 H 1.48502 * 109.46740 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47107 * 119.99559 * 3 2 1 7 7 C 1.37877 * 119.99660 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99819 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00533 * 359.97438 * 7 2 1 10 10 C 1.53507 * 114.17311 * 179.97438 * 9 7 2 11 11 N 1.47480 * 87.93050 * 139.67369 * 10 9 7 12 12 C 1.46906 * 111.00036 * 221.29895 * 11 10 9 13 13 C 1.50699 * 109.47140 * 170.00054 * 12 11 10 14 14 C 1.38593 * 120.79883 * 269.71830 * 13 12 11 15 15 N 1.32332 * 119.10147 * 179.71724 * 14 13 12 16 16 C 1.31795 * 120.81998 * 0.57032 * 15 14 13 17 17 N 1.31796 * 121.75126 * 359.70503 * 16 15 14 18 18 C 1.32330 * 120.82152 * 359.97438 * 17 16 15 19 19 C 1.47477 * 87.83705 * 332.99099 * 11 10 9 20 20 H 0.97000 * 120.00331 * 0.02562 * 1 2 3 21 21 H 1.09005 * 113.25103 * 47.05251 * 9 7 2 22 22 H 1.08997 * 113.47520 * 24.90837 * 10 9 7 23 23 H 1.08993 * 113.48089 * 254.44136 * 10 9 7 24 24 H 1.09004 * 109.47040 * 289.99992 * 12 11 10 25 25 H 1.09000 * 109.47033 * 49.99944 * 12 11 10 26 26 H 1.07999 * 120.44988 * 0.02562 * 14 13 12 27 27 H 1.07997 * 119.12603 * 179.72212 * 16 15 14 28 28 H 1.07999 * 120.44863 * 180.02562 * 18 17 16 29 29 H 1.09001 * 113.47815 * 141.77739 * 19 11 10 30 30 H 1.09007 * 113.47621 * 272.24503 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.1495 -3.7438 0.0016 11 7 1.2081 -4.3580 0.9563 12 6 1.9273 -5.0854 2.0107 13 6 0.9592 -5.4875 3.0935 14 6 0.7152 -4.6531 4.1728 15 7 -0.1457 -5.0372 5.1016 16 6 -0.7583 -6.2008 5.0145 17 7 -0.5469 -7.0222 4.0057 18 6 0.2956 -6.7029 3.0365 19 6 0.8564 -2.9960 1.3996 20 1 -0.4850 0.8400 -0.0004 21 1 0.4446 -2.5312 -0.7311 22 1 3.1392 -3.5649 0.4218 23 1 2.1856 -4.2533 -0.9613 24 1 2.3890 -5.9771 1.5868 25 1 2.6992 -4.4427 2.4339 26 1 1.2171 -3.7001 4.2524 27 1 -1.4523 -6.4888 5.7903 28 1 0.4640 -7.3804 2.2125 29 1 -0.2035 -2.8717 1.6214 30 1 1.5010 -2.6175 2.1929 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137663793.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:55 Heat of formation + Delta-G solvation = 81.704453 kcal Electronic energy + Delta-G solvation = -14205.552180 eV Core-core repulsion = 11809.064609 eV Total energy + Delta-G solvation = -2396.487571 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.91850 -38.94399 -33.63853 -33.56531 -32.34198 -28.91855 -25.99869 -25.02145 -24.31122 -23.62622 -21.43316 -18.75150 -17.51287 -17.36722 -16.70846 -15.16465 -14.98175 -14.51995 -14.29907 -13.93103 -13.55763 -13.44353 -12.86356 -12.12899 -11.92517 -11.45115 -11.03325 -10.88700 -10.69991 -10.61944 -10.42034 -9.86213 -9.65667 -9.12781 -9.08953 -8.97118 -8.49691 -8.13276 -6.10666 -4.16219 1.00813 1.18950 3.26624 3.32543 3.33921 3.87206 4.23475 4.32756 4.35600 4.75284 4.79034 4.88988 5.12953 5.20043 5.48023 5.65480 5.77488 5.95709 6.09524 6.22373 6.34749 6.49182 6.58263 6.59551 6.98575 7.04317 7.07716 7.65156 7.82014 7.94637 8.15764 8.29549 8.87038 9.49466 10.98799 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.045038 B = 0.006642 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.543200 B = 4214.474849 C = 4516.437879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.043 3.957 10 C -0.005 4.005 11 N -0.481 5.481 12 C 0.064 3.936 13 C -0.166 4.166 14 C 0.154 3.846 15 N -0.520 5.520 16 C 0.279 3.721 17 N -0.524 5.524 18 C 0.159 3.841 19 C 0.004 3.996 20 H 0.263 0.737 21 H 0.065 0.935 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.080 0.920 25 H 0.052 0.948 26 H 0.165 0.835 27 H 0.192 0.808 28 H 0.166 0.834 29 H 0.062 0.938 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.494 -9.680 6.010 11.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.076 0.924 9 C 0.024 3.976 10 C -0.133 4.133 11 N -0.203 5.203 12 C -0.066 4.066 13 C -0.171 4.171 14 C -0.012 4.012 15 N -0.234 5.234 16 C -0.009 4.009 17 N -0.238 5.238 18 C -0.008 4.008 19 C -0.125 4.125 20 H 0.073 0.927 21 H 0.083 0.917 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.099 0.901 25 H 0.070 0.930 26 H 0.182 0.818 27 H 0.209 0.791 28 H 0.183 0.817 29 H 0.080 0.920 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.173 -10.320 6.524 12.265 hybrid contribution 1.614 1.664 -0.186 2.326 sum 2.787 -8.656 6.338 11.084 Atomic orbital electron populations 1.69953 1.06032 1.26995 1.49237 1.25022 0.94817 0.99219 0.94491 0.86666 0.79650 0.83050 0.78703 1.20106 1.21203 1.20206 1.20980 0.92707 0.90187 1.51897 0.92403 1.20083 0.94301 0.90860 0.92385 1.24042 0.95747 0.97657 0.95865 1.69047 1.27207 1.14556 1.09511 1.21480 0.93400 1.00144 0.91554 1.21638 1.00849 0.96702 0.97881 1.23213 0.91427 0.98370 0.88166 1.68411 1.08379 1.17478 1.29093 1.24876 0.95440 0.85925 0.94704 1.68398 1.16836 1.35412 1.03115 1.23088 0.88685 0.93960 0.95017 1.24078 1.00136 0.86620 1.01647 0.92713 0.91739 0.92512 0.91703 0.90137 0.92974 0.81756 0.79148 0.81660 0.91984 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.18 13.26 55.43 0.74 -24.45 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -13.68 8.82 -34.44 -0.30 -13.99 16 8 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16 9 C 0.04 1.03 3.77 -91.24 -0.34 0.69 16 10 C 0.00 -0.09 7.28 -7.55 -0.05 -0.15 16 11 N -0.48 -9.07 6.40 -246.10 -1.58 -10.64 16 12 C 0.06 0.96 5.02 -4.97 -0.02 0.94 16 13 C -0.17 -2.46 5.20 -104.36 -0.54 -3.00 16 14 C 0.15 2.35 10.49 -17.21 -0.18 2.17 16 15 N -0.52 -7.97 10.44 -14.58 -0.15 -8.13 16 16 C 0.28 3.83 12.29 -92.15 -1.13 2.70 16 17 N -0.52 -7.58 10.44 -14.58 -0.15 -7.73 16 18 C 0.16 2.22 11.01 -17.20 -0.19 2.03 16 19 C 0.00 0.09 6.45 -7.55 -0.05 0.04 16 20 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 21 H 0.06 1.73 8.11 -51.93 -0.42 1.31 16 22 H 0.06 1.07 7.72 -51.93 -0.40 0.67 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 24 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 25 H 0.05 0.77 7.52 -51.93 -0.39 0.38 16 26 H 0.17 2.35 7.85 -52.49 -0.41 1.94 16 27 H 0.19 1.93 8.06 -52.49 -0.42 1.50 16 28 H 0.17 1.92 8.06 -52.49 -0.42 1.49 16 29 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.05 1.16 7.45 -51.93 -0.39 0.77 16 LS Contribution 262.44 15.07 3.95 3.95 Total: -1.00 -29.03 262.44 -8.80 -37.82 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -3.67 Total: 0.42 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -2.92 Total: -6.84 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -1.15 Total: -50.95 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.03 -8.80 -37.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137663793.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.528 kcal (2) G-P(sol) polarization free energy of solvation -29.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds