Wall clock time and date at job start Sun Mar 29 2020 22:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86798 * 119.99577 * 2 1 4 4 H 1.48496 * 109.47009 * 239.99843 * 3 2 1 5 5 H 1.48498 * 109.47594 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46858 * 120.00284 * 3 2 1 7 7 C 1.38826 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99611 * 179.97438 * 7 2 1 9 9 N 1.36895 * 120.00009 * 0.27482 * 7 2 1 10 10 C 1.38824 * 119.99868 * 179.72360 * 9 7 2 11 11 C 1.39429 * 120.22734 * 359.97438 * 10 9 7 12 12 N 1.31617 * 119.62571 * 180.09541 * 11 10 9 13 13 C 1.33000 * 120.72296 * 359.90792 * 12 11 10 14 14 C 1.37715 * 119.81269 * 359.90621 * 13 12 11 15 15 N 1.32457 * 120.22622 * 179.72393 * 10 9 7 16 16 C 1.50627 * 122.58322 * 180.44246 * 14 13 12 17 17 C 1.52743 * 110.55950 * 342.25437 * 16 14 13 18 18 C 1.53323 * 108.39746 * 51.09620 * 17 16 14 19 19 C 1.50635 * 117.62473 * 179.67195 * 13 12 11 20 20 H 0.96996 * 120.00423 * 359.97438 * 1 2 3 21 21 H 0.97000 * 119.99711 * 359.72576 * 9 7 2 22 22 H 1.07997 * 120.18590 * 0.12297 * 11 10 9 23 23 H 1.09004 * 109.25488 * 221.97866 * 16 14 13 24 24 H 1.08997 * 109.23346 * 102.52238 * 16 14 13 25 25 H 1.09000 * 109.68165 * 291.36426 * 17 16 14 26 26 H 1.09008 * 109.70711 * 170.83209 * 17 16 14 27 27 H 1.08999 * 109.67905 * 170.37196 * 18 17 16 28 28 H 1.08998 * 109.70458 * 49.84114 * 18 17 16 29 29 H 1.08999 * 109.25600 * 282.76811 * 19 13 12 30 30 H 1.09000 * 109.25758 * 42.25168 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0098 -1.2023 -0.0005 8 1 3.0898 -1.2022 -0.0010 9 7 1.3253 -2.3878 -0.0068 10 6 2.0195 -3.5900 -0.0131 11 6 3.4138 -3.5955 -0.0137 12 7 4.0599 -4.7421 -0.0216 13 6 3.3974 -5.8953 -0.0273 14 6 2.0203 -5.8938 -0.0228 15 7 1.3618 -4.7398 -0.0136 16 6 1.2078 -7.1622 -0.0189 17 6 2.0639 -8.3490 -0.4564 18 6 3.3477 -8.3547 0.3819 19 6 4.2067 -7.1657 -0.0439 20 1 -0.4850 0.8400 0.0004 21 1 0.3553 -2.3878 -0.0068 22 1 3.9605 -2.6641 -0.0072 23 1 0.3675 -7.0529 -0.7046 24 1 0.8294 -7.3431 0.9871 25 1 2.3154 -8.2508 -1.5124 26 1 1.5157 -9.2772 -0.2944 27 1 3.8939 -9.2822 0.2104 28 1 3.0968 -8.2665 1.4389 29 1 4.5849 -7.3379 -1.0516 30 1 5.0470 -7.0657 0.6433 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155537401.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:50 Heat of formation + Delta-G solvation = 11.103788 kcal Electronic energy + Delta-G solvation = -14269.282568 eV Core-core repulsion = 11869.733523 eV Total energy + Delta-G solvation = -2399.549045 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.77506 -38.32133 -36.60342 -35.07995 -33.63954 -30.97588 -30.09027 -26.90448 -25.57681 -23.72050 -23.43689 -20.90553 -20.00395 -18.31588 -17.85399 -16.77303 -16.36523 -15.95206 -15.54018 -15.14493 -14.73228 -14.68199 -13.94545 -13.62854 -13.44099 -13.37139 -12.78516 -12.45759 -12.24295 -12.15121 -12.05843 -11.76043 -11.58250 -11.48976 -11.24119 -10.54482 -9.67042 -8.83238 -8.61143 -5.90341 0.34331 0.64782 1.41584 1.50018 1.53581 2.18524 2.79231 2.88825 3.28250 3.59655 3.73476 4.02526 4.07504 4.12745 4.32165 4.54514 4.66963 4.74186 4.80538 4.95606 5.01479 5.12852 5.20577 5.26062 5.29080 5.41337 5.54837 5.61620 5.95032 6.52542 6.78500 7.15776 7.25978 7.63406 8.56344 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.063908 B = 0.006618 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.025289 B = 4230.057711 C = 4619.855508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.018 4.018 3 Si 1.008 2.992 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.328 4.328 8 H 0.114 0.886 9 N -0.537 5.537 10 C 0.302 3.698 11 C -0.050 4.050 12 N -0.419 5.419 13 C -0.070 4.070 14 C 0.144 3.856 15 N -0.571 5.571 16 C -0.063 4.063 17 C -0.109 4.109 18 C -0.112 4.112 19 C -0.039 4.039 20 H 0.281 0.719 21 H 0.394 0.606 22 H 0.156 0.844 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.631 -11.822 -0.045 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.220 4.220 3 Si 0.830 3.170 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.458 4.458 8 H 0.131 0.869 9 N -0.144 5.144 10 C 0.056 3.944 11 C -0.225 4.225 12 N -0.132 5.132 13 C -0.211 4.211 14 C 0.000 4.000 15 N -0.299 5.299 16 C -0.101 4.101 17 C -0.147 4.147 18 C -0.149 4.149 19 C -0.077 4.077 20 H 0.091 0.909 21 H 0.228 0.772 22 H 0.173 0.827 23 H 0.096 0.904 24 H 0.107 0.893 25 H 0.083 0.917 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.515 -11.348 -0.040 12.213 hybrid contribution -0.489 1.462 -0.002 1.542 sum 4.026 -9.885 -0.042 10.674 Atomic orbital electron populations 1.69796 1.07681 1.30046 1.48000 1.26361 0.96567 1.03304 0.95750 0.84745 0.77528 0.75064 0.79672 1.18665 1.20231 1.18654 1.20095 0.93654 0.82513 1.49524 0.86889 1.40801 1.08183 1.01440 1.64012 1.19421 0.90863 0.86954 0.97142 1.22677 0.90775 0.97004 1.12007 1.67882 1.40488 0.98286 1.06521 1.21681 0.91998 0.94778 1.12660 1.22094 0.92288 0.93615 0.92025 1.67772 1.40422 0.97632 1.24056 1.20440 0.97407 0.89096 1.03181 1.21562 0.96052 0.97005 1.00033 1.21570 0.95997 0.97513 0.99854 1.20042 0.96805 0.88827 1.02044 0.90917 0.77220 0.82695 0.90366 0.89347 0.91689 0.88017 0.88213 0.91848 0.90856 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.71 13.05 21.65 0.28 -49.43 16 2 C -0.02 -0.94 5.50 84.87 0.47 -0.47 16 3 Si 1.01 39.74 29.55 68.60 2.03 41.77 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.28 -10.69 7.11 99.48 0.71 -9.99 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 7 C -0.33 -17.20 9.56 84.04 0.80 -16.39 16 8 H 0.11 5.56 5.69 -2.91 -0.02 5.54 16 9 N -0.54 -28.62 5.44 -189.08 -1.03 -29.65 16 10 C 0.30 15.25 7.64 133.18 1.02 16.27 16 11 C -0.05 -2.39 10.50 85.01 0.89 -1.49 16 12 N -0.42 -18.51 10.32 -182.82 -1.89 -20.39 16 13 C -0.07 -2.73 6.61 42.24 0.28 -2.45 16 14 C 0.14 5.70 6.61 42.25 0.28 5.98 16 15 N -0.57 -27.09 10.36 -180.95 -1.87 -28.96 16 16 C -0.06 -1.78 5.92 29.74 0.18 -1.61 16 17 C -0.11 -2.19 5.98 30.62 0.18 -2.01 16 18 C -0.11 -2.24 5.98 30.62 0.18 -2.06 16 19 C -0.04 -1.07 5.92 29.74 0.18 -0.90 16 20 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 21 H 0.39 21.91 8.02 -92.71 -0.74 21.17 16 22 H 0.16 7.12 5.98 -2.91 -0.02 7.10 16 23 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 26 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 1.30 8.10 -2.39 -0.02 1.29 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -61.69 253.29 2.40 -59.29 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: 0.42 Total: 32.49 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 4.46 Total: -5.13 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -4.51 Total: -128.43 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Total: -61.69 2.40 -59.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537401.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.396 kcal (2) G-P(sol) polarization free energy of solvation -61.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds