Wall clock time and date at job start Sun Mar 29 2020 21:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36893 * 120.81258 * 2 1 4 4 C 1.39535 * 119.63201 * 180.24202 * 3 2 1 5 5 N 1.38786 * 119.41468 * 179.76187 * 4 3 2 6 6 C 1.36888 * 119.99696 * 5.78525 * 5 4 3 7 7 H 1.07997 * 120.00461 * 354.72072 * 6 5 4 8 8 C 1.38802 * 119.99680 * 174.45030 * 6 5 4 9 9 N 1.31573 * 119.99814 * 180.27180 * 8 6 5 10 10 Si 1.86798 * 119.99965 * 0.27499 * 8 6 5 11 11 H 1.48492 * 109.47634 * 89.99924 * 10 8 6 12 12 H 1.48506 * 109.47069 * 210.00144 * 10 8 6 13 13 H 1.48501 * 109.46966 * 329.99581 * 10 8 6 14 14 N 1.32377 * 121.16559 * 359.48990 * 4 3 2 15 15 C 1.32381 * 121.34291 * 0.25692 * 14 4 3 16 16 N 1.37790 * 133.77686 * 180.02562 * 15 14 4 17 17 H 0.97000 * 126.28453 * 359.97438 * 16 15 14 18 18 C 1.36207 * 107.43051 * 179.97438 * 16 15 14 19 19 N 1.30102 * 110.06869 * 0.02562 * 18 16 15 20 20 C 1.35686 * 109.51141 * 359.97438 * 19 18 16 21 21 H 1.09000 * 109.47348 * 270.26184 * 1 2 3 22 22 H 1.09004 * 109.46688 * 30.25529 * 1 2 3 23 23 H 1.08996 * 109.47459 * 150.25451 * 1 2 3 24 24 H 1.07998 * 120.17856 * 359.97438 * 3 2 1 25 25 H 0.96996 * 120.00203 * 185.77518 * 5 4 3 26 26 H 0.97008 * 119.99818 * 180.02562 * 9 8 6 27 27 H 1.08006 * 124.96897 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1757 0.0000 4 6 3.6033 1.1470 -0.0051 5 7 4.3096 2.3416 -0.0101 6 6 3.6431 3.5313 0.1095 7 1 2.5633 3.5465 0.1219 8 6 4.3552 4.7175 0.2204 9 7 3.7146 5.8605 0.3408 10 14 6.2229 4.6913 0.1988 11 1 6.7037 4.8231 -1.2000 12 1 6.7432 5.8214 1.0097 13 1 6.7065 3.4086 0.7697 14 7 4.2649 0.0004 0.0001 15 6 3.6298 -1.1611 0.0053 16 7 4.0453 -2.4748 0.0116 17 1 4.9639 -2.7863 0.0132 18 6 2.9293 -3.2557 0.0154 19 7 1.8629 -2.5105 0.0112 20 6 2.2241 -1.2026 0.0050 21 1 -0.3634 0.0047 1.0276 22 1 -0.3633 0.8877 -0.5178 23 1 -0.3634 -0.8922 -0.5098 24 1 1.6845 2.1202 -0.0004 25 1 5.2756 2.3336 -0.0982 26 1 4.2123 6.6896 0.4179 27 1 2.9296 -4.3358 0.0202 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182863.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:47 Heat of formation + Delta-G solvation = 69.054668 kcal Electronic energy + Delta-G solvation = -13920.880320 eV Core-core repulsion = 11485.729782 eV Total energy + Delta-G solvation = -2435.150539 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.86310 -39.75664 -36.69281 -35.12701 -33.81263 -32.53766 -29.55399 -28.37828 -26.46191 -23.75908 -22.94915 -21.76663 -20.53702 -18.62401 -18.34178 -17.40606 -16.72453 -16.40830 -15.78751 -15.37455 -14.82867 -14.38117 -14.14005 -14.01407 -13.80544 -13.51626 -13.01187 -12.69812 -12.48498 -11.97634 -11.79194 -11.61053 -11.48668 -10.57730 -9.93641 -9.53502 -8.63747 -8.47718 -5.86031 0.24105 0.66475 1.30369 1.32035 1.37684 1.84636 2.12568 2.16838 2.82482 2.90645 3.28565 3.55337 3.84385 4.23108 4.26954 4.47231 4.73087 4.78882 4.84251 5.07423 5.15144 5.26589 5.46838 5.56083 5.82893 5.97064 6.49033 6.60957 6.96909 7.09170 7.26598 7.61492 8.65960 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.043980 B = 0.008226 C = 0.006961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.505668 B = 3402.997209 C = 4021.446538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.035 3.965 3 C -0.246 4.246 4 C 0.401 3.599 5 N -0.572 5.572 6 C -0.311 4.311 7 H 0.099 0.901 8 C -0.002 4.002 9 N -0.917 5.917 10 Si 0.944 3.056 11 H -0.261 1.261 12 H -0.270 1.270 13 H -0.256 1.256 14 N -0.611 5.611 15 C 0.282 3.718 16 N -0.588 5.588 17 H 0.436 0.564 18 C 0.248 3.752 19 N -0.504 5.504 20 C -0.111 4.111 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.133 0.867 25 H 0.385 0.615 26 H 0.281 0.719 27 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.693 -14.466 -0.672 14.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.026 3.974 3 C -0.272 4.272 4 C 0.154 3.846 5 N -0.187 5.187 6 C -0.441 4.441 7 H 0.116 0.884 8 C -0.203 4.203 9 N -0.556 5.556 10 Si 0.767 3.233 11 H -0.185 1.185 12 H -0.195 1.195 13 H -0.181 1.181 14 N -0.344 5.344 15 C 0.043 3.957 16 N -0.207 5.207 17 H 0.277 0.723 18 C -0.039 4.039 19 N -0.223 5.223 20 C -0.232 4.232 21 H 0.101 0.899 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.150 0.850 25 H 0.220 0.780 26 H 0.090 0.910 27 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 0.551 -14.194 -0.633 14.219 hybrid contribution 1.627 0.758 0.015 1.795 sum 2.178 -13.437 -0.618 13.626 Atomic orbital electron populations 1.20699 0.88310 1.03389 1.03238 1.19277 0.97432 0.88942 0.91722 1.20932 0.92936 0.98881 1.14469 1.17940 0.88641 0.84721 0.93268 1.40767 1.07568 1.02001 1.68388 1.19283 0.94093 0.82353 1.48338 0.88374 1.25659 1.03659 0.94242 0.96773 1.69774 1.38140 0.98592 1.49070 0.85615 0.79049 0.79067 0.79560 1.18549 1.19529 1.18106 1.65637 1.40361 0.95499 1.32868 1.18782 0.91222 0.86307 0.99399 1.42701 1.11555 1.02069 1.64409 0.72319 1.26144 0.78469 0.99720 0.99551 1.70098 1.30283 1.00405 1.21552 1.19282 0.91898 0.92990 1.18995 0.89905 0.90441 0.90419 0.84970 0.78024 0.90951 0.71426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.08 10.06 71.24 0.72 -2.37 15 2 C 0.03 1.37 5.91 -19.75 -0.12 1.25 15 3 C -0.25 -10.94 8.94 22.27 0.20 -10.74 15 4 C 0.40 18.97 7.59 133.24 1.01 19.98 15 5 N -0.57 -28.02 5.23 -189.11 -0.99 -29.01 15 6 C -0.31 -16.62 10.01 84.04 0.84 -15.78 15 7 H 0.10 5.56 5.87 -2.91 -0.02 5.54 15 8 C 0.00 -0.11 5.50 84.87 0.47 0.36 15 9 N -0.92 -51.54 13.97 21.65 0.30 -51.24 15 10 Si 0.94 40.18 27.69 68.60 1.90 42.08 15 11 H -0.26 -10.69 7.11 99.48 0.71 -9.98 15 12 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 13 H -0.26 -10.45 6.59 99.48 0.66 -9.79 15 14 N -0.61 -27.16 10.42 -190.17 -1.98 -29.14 15 15 C 0.28 10.98 8.45 133.85 1.13 12.11 15 16 N -0.59 -15.59 6.22 -195.76 -1.22 -16.81 15 17 H 0.44 8.29 8.96 -92.71 -0.83 7.46 15 18 C 0.25 5.70 12.97 180.00 2.34 8.03 15 19 N -0.50 -16.49 11.28 -191.66 -2.16 -18.66 15 20 C -0.11 -4.33 6.97 39.56 0.28 -4.05 15 21 H 0.08 2.35 8.14 -2.39 -0.02 2.33 15 22 H 0.08 2.20 8.10 -2.38 -0.02 2.18 15 23 H 0.08 2.26 8.11 -2.39 -0.02 2.24 15 24 H 0.13 5.99 5.92 -2.91 -0.02 5.97 15 25 H 0.38 17.89 5.94 -92.71 -0.55 17.33 15 26 H 0.28 14.64 8.31 -92.70 -0.77 13.87 15 27 H 0.27 2.47 8.06 -2.91 -0.02 2.45 15 Total: -1.00 -67.42 239.43 2.51 -64.91 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: -0.20 Total: 29.07 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 6.86 Total: 8.79 kcal Atomic # 7 Polarization: -138.80 SS G_CDS: -6.05 Total: -144.85 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 1.90 Total: 42.08 kcal Total: -67.42 2.51 -64.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182863.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.962 kcal (2) G-P(sol) polarization free energy of solvation -67.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds