Wall clock time and date at job start Sun Mar 29 2020 21:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99695 * 2 1 4 4 H 1.48495 * 109.47399 * 264.89051 * 3 2 1 5 5 H 1.48504 * 109.47185 * 24.89737 * 3 2 1 6 6 H 1.48502 * 109.46867 * 144.89248 * 3 2 1 7 7 C 1.37875 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99970 * 0.07174 * 7 2 1 9 9 C 1.50703 * 120.00062 * 179.79735 * 7 2 1 10 10 H 1.09007 * 109.46566 * 5.45539 * 9 7 2 11 11 O 1.42901 * 109.47136 * 125.45210 * 9 7 2 12 12 C 1.42901 * 113.99883 * 270.00310 * 11 9 7 13 13 C 1.53006 * 117.49895 * 218.62390 * 12 11 9 14 14 C 1.52999 * 117.49975 * 150.00129 * 12 11 9 15 15 C 1.50701 * 109.47403 * 245.45694 * 9 7 2 16 16 C 1.38235 * 119.99363 * 277.77722 * 15 9 7 17 17 C 1.38238 * 119.99717 * 179.79140 * 16 15 9 18 18 C 1.38231 * 119.99947 * 0.43189 * 17 16 15 19 19 C 1.38241 * 120.00073 * 359.81463 * 18 17 16 20 20 C 1.38235 * 120.00095 * 359.97438 * 19 18 17 21 21 H 0.96990 * 120.00407 * 359.97438 * 1 2 3 22 22 H 1.08995 * 115.55436 * 4.32804 * 12 11 9 23 23 H 1.09003 * 117.49378 * 0.02562 * 13 12 11 24 24 H 1.08994 * 117.49931 * 145.02082 * 13 12 11 25 25 H 1.08996 * 117.50457 * 214.97751 * 14 12 11 26 26 H 1.09000 * 117.49642 * 359.97438 * 14 12 11 27 27 H 1.07995 * 120.00581 * 359.97438 * 16 15 9 28 28 H 1.08003 * 120.00358 * 180.27661 * 17 16 15 29 29 H 1.07996 * 120.00349 * 179.84227 * 18 17 16 30 30 H 1.07999 * 120.00340 * 179.97438 * 19 18 17 31 31 H 1.07999 * 120.00631 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6046 1.9842 -1.3944 5 1 1.3967 2.6814 0.5894 6 1 3.4885 1.4738 0.8052 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0021 9 6 3.5116 -1.1940 -0.0052 10 1 3.8751 -0.1708 0.0901 11 8 3.9913 -1.9740 1.0919 12 6 4.1886 -1.2269 2.2939 13 6 5.4086 -1.5743 3.1495 14 6 4.0066 -1.9643 3.6221 15 6 4.0100 -1.7859 -1.2983 16 6 4.0872 -3.1582 -1.4458 17 6 4.5403 -3.7013 -2.6335 18 6 4.9247 -2.8720 -3.6705 19 6 4.8523 -1.4995 -3.5212 20 6 4.3951 -0.9565 -2.3350 21 1 -0.4850 0.8399 0.0004 22 1 3.8837 -0.1812 2.2530 23 1 6.0609 -2.3725 2.7952 24 1 5.9065 -0.7572 3.6714 25 1 3.5823 -1.4038 4.4550 26 1 3.7360 -3.0192 3.5790 27 1 3.7907 -3.8061 -0.6343 28 1 4.5964 -4.7735 -2.7505 29 1 5.2811 -3.2961 -4.5975 30 1 5.1530 -0.8516 -4.3312 31 1 4.3389 0.1157 -2.2181 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205468712.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:35 Heat of formation + Delta-G solvation = -10.047458 kcal Electronic energy + Delta-G solvation = -14389.948499 eV Core-core repulsion = 12022.615427 eV Total energy + Delta-G solvation = -2367.333072 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.26943 -38.92914 -36.19410 -34.54986 -32.39921 -31.64583 -29.01134 -24.86608 -23.53163 -23.22779 -22.47549 -21.83322 -19.29536 -18.03808 -17.67389 -16.53881 -16.28182 -15.58188 -15.45535 -14.87408 -14.75274 -14.42875 -14.16592 -13.76211 -13.44046 -13.21138 -12.91859 -12.48855 -12.37129 -11.99996 -11.88068 -11.59396 -11.38325 -11.17965 -10.88079 -9.82559 -9.70586 -9.40096 -8.42263 -6.51424 0.59145 0.63296 1.22949 1.25960 1.34482 2.20097 2.69296 2.99975 3.05742 3.10156 3.95083 4.07586 4.16178 4.20086 4.26822 4.36161 4.38472 4.63641 4.70165 4.74791 4.85265 4.90209 5.03582 5.21170 5.26997 5.28354 5.36440 5.67584 5.71814 5.88400 6.07326 6.25168 6.51276 6.69943 7.18069 8.74732 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.019110 B = 0.013507 C = 0.009485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.819917 B = 2072.510230 C = 2951.272595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.025 3.975 3 Si 0.929 3.071 4 H -0.252 1.252 5 H -0.276 1.276 6 H -0.243 1.243 7 C -0.528 4.528 8 H 0.028 0.972 9 C 0.218 3.782 10 H 0.041 0.959 11 O -0.376 6.376 12 C -0.004 4.004 13 C -0.172 4.172 14 C -0.185 4.185 15 C -0.071 4.071 16 C -0.124 4.124 17 C -0.123 4.123 18 C -0.134 4.134 19 C -0.118 4.118 20 C -0.145 4.145 21 H 0.271 0.729 22 H 0.091 0.909 23 H 0.098 0.902 24 H 0.121 0.879 25 H 0.112 0.888 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.143 0.857 29 H 0.155 0.845 30 H 0.150 0.850 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.338 -0.707 -1.665 12.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.175 4.175 3 Si 0.752 3.248 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.168 1.168 7 C -0.566 4.566 8 H 0.046 0.954 9 C 0.161 3.839 10 H 0.059 0.941 11 O -0.295 6.295 12 C -0.062 4.062 13 C -0.209 4.209 14 C -0.222 4.222 15 C -0.072 4.072 16 C -0.142 4.142 17 C -0.141 4.141 18 C -0.152 4.152 19 C -0.136 4.136 20 C -0.164 4.164 21 H 0.081 0.919 22 H 0.109 0.891 23 H 0.116 0.884 24 H 0.139 0.861 25 H 0.131 0.869 26 H 0.108 0.892 27 H 0.121 0.879 28 H 0.161 0.839 29 H 0.172 0.828 30 H 0.168 0.832 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 12.208 -0.803 -1.687 12.350 hybrid contribution -0.698 0.806 0.275 1.101 sum 11.510 0.003 -1.411 11.596 Atomic orbital electron populations 1.70028 1.08154 1.28581 1.50569 1.25951 0.95614 1.02804 0.93114 0.86039 0.79474 0.78718 0.80594 1.17666 1.20145 1.16761 1.21409 0.90814 0.93327 1.51050 0.95396 1.19063 0.91610 0.90671 0.82508 0.94134 1.87691 1.85515 1.37090 1.19207 1.22702 1.03695 0.95201 0.84637 1.23451 0.90948 1.04302 1.02186 1.23311 1.00100 1.01660 0.97118 1.20222 0.95689 0.94952 0.96291 1.20963 1.00461 0.94452 0.98335 1.21423 0.98941 1.00974 0.92789 1.21422 1.00882 0.93267 0.99621 1.21375 0.99262 0.96248 0.96720 1.21068 1.01364 0.99345 0.94575 0.91933 0.89077 0.88375 0.86124 0.86949 0.89192 0.87896 0.83888 0.82751 0.83248 0.86919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.02 13.96 21.45 0.30 -57.72 16 2 C 0.02 1.43 5.47 84.65 0.46 1.89 16 3 Si 0.93 42.48 27.24 68.60 1.87 44.35 16 4 H -0.25 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 6 H -0.24 -10.23 5.75 99.48 0.57 -9.66 16 7 C -0.53 -31.28 9.18 25.60 0.23 -31.05 16 8 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 9 C 0.22 10.88 2.21 29.10 0.06 10.94 16 10 H 0.04 1.97 3.88 -2.38 -0.01 1.96 16 11 O -0.38 -18.07 9.47 -148.98 -1.41 -19.48 16 12 C 0.00 -0.16 6.31 30.60 0.19 0.03 16 13 C -0.17 -5.21 10.48 30.60 0.32 -4.89 16 14 C -0.18 -6.18 10.48 30.59 0.32 -5.86 16 15 C -0.07 -3.23 4.97 -19.87 -0.10 -3.33 16 16 C -0.12 -5.19 9.36 22.27 0.21 -4.98 16 17 C -0.12 -4.06 10.05 22.27 0.22 -3.83 16 18 C -0.13 -3.87 10.05 22.27 0.22 -3.65 16 19 C -0.12 -3.71 10.05 22.27 0.22 -3.48 16 20 C -0.15 -5.74 9.67 22.27 0.22 -5.52 16 21 H 0.27 15.58 8.31 -92.72 -0.77 14.81 16 22 H 0.09 3.81 7.08 -2.39 -0.02 3.79 16 23 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 24 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 25 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 26 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 27 H 0.10 4.53 7.71 -2.91 -0.02 4.51 16 28 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 29 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 30 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 31 H 0.11 4.28 8.05 -2.91 -0.02 4.26 16 Total: -1.00 -68.64 268.73 4.32 -64.32 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.97 Total: 22.25 kcal Atomic # 6 Polarization: -56.32 SS G_CDS: 2.59 Total: -53.72 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: 0.30 Total: -57.72 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -1.41 Total: -19.48 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.87 Total: 44.35 kcal Total: -68.64 4.32 -64.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205468712.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.269 kcal (2) G-P(sol) polarization free energy of solvation -68.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds