Wall clock time and date at job start Sun Mar 29 2020 21:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99963 * 2 1 4 4 H 1.48493 * 109.47161 * 269.99873 * 3 2 1 5 5 H 1.48504 * 109.46954 * 29.99943 * 3 2 1 6 6 H 1.48495 * 109.47066 * 149.99473 * 3 2 1 7 7 C 1.37872 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99960 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00320 * 180.02562 * 7 2 1 10 10 O 1.42901 * 109.47395 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99972 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47382 * 330.00104 * 11 10 9 13 13 C 1.53002 * 109.46923 * 210.00130 * 11 10 9 14 14 C 1.53006 * 109.46711 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47445 * 59.99695 * 14 13 11 16 16 C 1.53002 * 109.47092 * 300.00075 * 15 14 13 17 17 C 1.53000 * 109.46726 * 90.00358 * 11 10 9 18 18 H 1.08992 * 109.47399 * 59.99748 * 17 11 10 19 19 Cl 1.80301 * 109.47018 * 299.99679 * 17 11 10 20 20 H 0.97003 * 120.00251 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47464 * 60.00021 * 9 7 2 22 22 H 1.09003 * 109.46831 * 300.00123 * 9 7 2 23 23 H 1.09002 * 109.47075 * 299.99607 * 13 11 10 24 24 H 1.08996 * 109.47407 * 60.00564 * 13 11 10 25 25 H 1.09001 * 109.46726 * 179.97438 * 14 13 11 26 26 H 1.09002 * 109.46589 * 299.99365 * 14 13 11 27 27 H 1.09002 * 109.47045 * 59.99942 * 15 14 13 28 28 H 1.09000 * 109.47140 * 179.97438 * 15 14 13 29 29 H 1.09000 * 109.46497 * 180.02562 * 16 15 14 30 30 H 1.09002 * 109.47067 * 299.99853 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 8 3.9879 -2.5413 0.0022 11 6 5.4125 -2.6541 0.0022 12 1 5.8449 -1.7959 -0.5123 13 6 5.8222 -3.9403 -0.7180 14 6 7.3475 -4.0613 -0.7174 15 6 7.8554 -4.1006 0.7253 16 6 7.4456 -2.8144 1.4455 17 6 5.9208 -2.6932 1.4448 18 1 5.4884 -3.5512 1.9593 19 17 5.4379 -1.1775 2.2935 20 1 -0.4851 0.8400 -0.0004 21 1 3.8746 -0.6800 0.8911 22 1 3.8752 -0.6803 -0.8889 23 1 5.3898 -4.7984 -0.2034 24 1 5.4601 -3.9124 -1.7457 25 1 7.6394 -4.9778 -1.2301 26 1 7.7802 -3.2032 -1.2318 27 1 7.4226 -4.9587 1.2396 28 1 8.9420 -4.1873 0.7257 29 1 7.8079 -2.8423 2.4731 30 1 7.8784 -1.9563 0.9312 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205622589.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:55 Heat of formation + Delta-G solvation = -99.695580 kcal Electronic energy + Delta-G solvation = -13273.992462 eV Core-core repulsion = 10900.339106 eV Total energy + Delta-G solvation = -2373.653356 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.081 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.15109 -37.41607 -36.63030 -34.82422 -31.60521 -31.09500 -29.35953 -24.20604 -23.53965 -23.08339 -20.93022 -19.07031 -17.54723 -16.95421 -16.51339 -16.07732 -15.36373 -15.18782 -14.70516 -14.19746 -14.10447 -13.62703 -13.47161 -13.00439 -12.80109 -12.61065 -12.29720 -12.05853 -11.86332 -11.72808 -11.46693 -11.40271 -11.36673 -11.02685 -10.90199 -9.92442 -8.38193 -6.42737 1.27531 1.30887 1.31590 1.43410 2.27225 2.92085 2.95197 3.52964 3.80144 3.93493 4.07587 4.18274 4.27705 4.34622 4.42244 4.64824 4.81980 4.85935 4.97413 5.11242 5.12711 5.15483 5.22252 5.30477 5.45399 5.48726 5.93583 6.59053 6.72663 7.19797 8.79074 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.041864 B = 0.009144 C = 0.008222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.665303 B = 3061.396135 C = 3404.774354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.016 3.984 3 Si 0.942 3.058 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.539 4.539 8 H 0.030 0.970 9 C 0.165 3.835 10 O -0.396 6.396 11 C 0.071 3.929 12 H 0.061 0.939 13 C -0.112 4.112 14 C -0.113 4.113 15 C -0.114 4.114 16 C -0.116 4.116 17 C -0.017 4.017 18 H 0.101 0.899 19 Cl -0.205 7.205 20 H 0.272 0.728 21 H 0.044 0.956 22 H -0.004 1.004 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.943 -5.673 1.129 20.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.181 4.181 3 Si 0.764 3.236 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.171 1.171 7 C -0.576 4.576 8 H 0.049 0.951 9 C 0.089 3.911 10 O -0.316 6.316 11 C 0.013 3.987 12 H 0.079 0.921 13 C -0.150 4.150 14 C -0.151 4.151 15 C -0.151 4.151 16 C -0.153 4.153 17 C -0.060 4.060 18 H 0.119 0.881 19 Cl -0.178 7.178 20 H 0.081 0.919 21 H 0.061 0.939 22 H 0.013 0.987 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.111 0.889 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 19.623 -5.612 1.197 20.445 hybrid contribution -0.549 1.017 0.081 1.159 sum 19.074 -4.595 1.279 19.661 Atomic orbital electron populations 1.70021 1.08032 1.28561 1.51593 1.25704 0.95696 1.02974 0.93760 0.85788 0.79709 0.78276 0.79864 1.18244 1.19717 1.17145 1.21182 0.91122 0.93677 1.51663 0.95146 1.20790 0.93164 0.81033 0.96069 1.87889 1.20259 1.28731 1.94714 1.22572 0.82351 1.00259 0.93528 0.92109 1.21649 0.97909 0.95036 1.00413 1.21577 0.92115 1.03704 0.97678 1.21596 1.02516 0.96164 0.94870 1.21915 0.89716 1.00511 1.03195 1.25050 0.99381 0.86877 0.94721 0.88121 1.98708 1.93362 1.44176 1.81553 0.91902 0.93864 0.98679 0.91116 0.91217 0.88938 0.91114 0.90987 0.88421 0.89404 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.91 13.96 21.45 0.30 -60.61 16 2 C 0.02 1.01 5.47 84.65 0.46 1.47 16 3 Si 0.94 45.49 27.47 68.60 1.88 47.38 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.25 -11.35 6.54 99.48 0.65 -10.70 16 7 C -0.54 -33.92 9.99 25.60 0.26 -33.66 16 8 H 0.03 2.14 8.06 -2.91 -0.02 2.11 16 9 C 0.16 8.62 4.32 71.24 0.31 8.93 16 10 O -0.40 -18.75 9.92 -148.98 -1.48 -20.22 16 11 C 0.07 2.41 2.33 30.60 0.07 2.48 16 12 H 0.06 2.04 7.79 -2.39 -0.02 2.02 16 13 C -0.11 -2.88 5.57 30.60 0.17 -2.71 16 14 C -0.11 -1.90 5.92 30.60 0.18 -1.72 16 15 C -0.11 -1.67 5.92 30.59 0.18 -1.49 16 16 C -0.12 -2.27 5.33 30.58 0.16 -2.11 16 17 C -0.02 -0.48 2.92 30.58 0.09 -0.39 16 18 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 19 Cl -0.20 -7.36 25.30 -2.72 -0.07 -7.43 16 20 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 21 H 0.04 2.21 3.95 -2.39 -0.01 2.20 16 22 H 0.00 -0.23 7.51 -2.39 -0.02 -0.24 16 23 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -72.02 254.07 3.57 -68.45 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: 1.05 Total: 1.64 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 1.88 Total: -29.21 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.30 Total: -60.61 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -1.48 Total: -20.22 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.38 kcal Atomic # 17 Polarization: -7.36 SS G_CDS: -0.07 Total: -7.43 kcal Total: -72.02 3.57 -68.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622589.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.242 kcal (2) G-P(sol) polarization free energy of solvation -72.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds