Wall clock time and date at job start Sun Mar 29 2020 21:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30657 * 1 3 3 Si 1.86802 * 120.00052 * 2 1 4 4 H 1.48491 * 109.46968 * 239.99942 * 3 2 1 5 5 H 1.48504 * 109.47030 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47035 * 119.99632 * 3 2 1 7 7 C 1.40161 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.40955 * 120.00537 * 0.02562 * 7 2 1 10 10 N 1.33692 * 119.10979 * 180.02562 * 9 7 2 11 11 C 1.31518 * 120.86022 * 180.02562 * 10 9 7 12 12 C 1.40687 * 119.06028 * 359.97438 * 11 10 9 13 13 C 1.47196 * 120.81296 * 179.97438 * 12 11 10 14 14 C 1.33737 * 125.97414 * 64.93431 * 13 12 11 15 15 C 1.51195 * 107.91115 * 180.02562 * 14 13 12 16 16 O 1.43981 * 105.87615 * 17.54496 * 15 14 13 17 17 C 1.43978 * 104.07045 * 332.23590 * 16 15 14 18 18 C 1.40698 * 118.37421 * 0.27768 * 12 11 10 19 19 N 1.31516 * 119.06146 * 359.43338 * 18 12 11 20 20 H 0.96993 * 120.00093 * 0.02562 * 1 2 3 21 21 H 1.07995 * 120.46572 * 179.97438 * 11 10 9 22 22 H 1.08005 * 126.09098 * 0.06607 * 14 13 12 23 23 H 1.09002 * 110.18179 * 258.42017 * 15 14 13 24 24 H 1.09000 * 110.18121 * 136.66852 * 15 14 13 25 25 H 1.09008 * 110.18065 * 146.81368 * 17 16 15 26 26 H 1.09002 * 110.18341 * 268.64401 * 17 16 15 27 27 H 1.07996 * 120.46845 * 179.70669 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 3.0943 1.6964 -1.2124 5 1 1.2756 2.7465 0.0006 6 1 3.0943 1.6964 1.2125 7 6 2.0073 -1.2139 0.0005 8 1 3.0874 -1.2138 0.0010 9 6 1.3026 -2.4346 0.0005 10 7 1.9890 -3.5819 0.0016 11 6 1.3666 -4.7404 0.0011 12 6 -0.0402 -4.7604 0.0000 13 6 -0.7761 -6.0351 -0.0011 14 6 -0.7726 -6.9452 0.9789 15 6 -1.6625 -8.0908 0.5528 16 8 -1.8214 -7.9573 -0.8720 17 6 -1.6675 -6.5458 -1.1105 18 6 -0.7263 -3.5321 -0.0065 19 7 -0.0343 -2.4137 0.0000 20 1 -0.4850 0.8400 -0.0004 21 1 1.9274 -5.6633 0.0016 22 1 -0.2308 -6.8748 1.9106 23 1 -2.6310 -8.0189 1.0477 24 1 -1.1890 -9.0434 0.7907 25 1 -1.1965 -6.3772 -2.0790 26 1 -2.6374 -6.0499 -1.0720 27 1 -1.8060 -3.5079 -0.0123 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239480945.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:40 Heat of formation + Delta-G solvation = 21.051271 kcal Electronic energy + Delta-G solvation = -13715.668938 eV Core-core repulsion = 11246.144065 eV Total energy + Delta-G solvation = -2469.524873 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.58072 -38.63515 -34.11410 -32.70647 -31.87763 -29.86968 -28.30812 -26.16959 -23.08155 -22.71955 -21.70725 -18.92983 -17.93758 -16.24224 -16.11694 -15.69903 -15.10140 -14.54246 -14.40255 -13.07885 -12.85274 -12.75926 -12.29105 -12.25822 -11.83523 -11.42702 -11.40608 -11.30599 -10.82682 -10.42150 -10.20098 -9.54922 -9.25920 -9.24019 -8.55241 -7.82003 -7.34427 -6.66515 -4.85366 2.11353 2.64903 2.90435 2.97776 3.00644 3.05811 3.77861 4.26151 4.49615 4.98629 5.32151 5.57481 5.60469 5.69709 5.71374 5.81489 5.82795 5.90516 6.20371 6.22240 6.62261 6.74193 6.84572 6.91329 7.13383 7.29186 7.54579 8.02486 8.36134 8.43549 8.99238 9.97682 10.15055 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.078327 B = 0.006350 C = 0.006093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.389940 B = 4408.515712 C = 4594.686462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.701 5.701 2 C 0.062 3.938 3 Si 0.922 3.078 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.385 4.385 8 H 0.095 0.905 9 C 0.383 3.617 10 N -0.594 5.594 11 C 0.189 3.811 12 C -0.325 4.325 13 C -0.043 4.043 14 C -0.234 4.234 15 C 0.078 3.922 16 O -0.375 6.375 17 C 0.072 3.928 18 C 0.181 3.819 19 N -0.508 5.508 20 H 0.279 0.721 21 H 0.130 0.870 22 H 0.139 0.861 23 H 0.063 0.937 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.748 -5.399 0.734 6.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.321 5.321 2 C -0.166 4.166 3 Si 0.745 3.255 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.419 4.419 8 H 0.113 0.887 9 C 0.150 3.850 10 N -0.313 5.313 11 C 0.015 3.985 12 C -0.336 4.336 13 C -0.045 4.045 14 C -0.253 4.253 15 C 0.001 3.999 16 O -0.294 6.294 17 C -0.004 4.004 18 C 0.005 3.995 19 N -0.224 5.224 20 H 0.090 0.910 21 H 0.147 0.853 22 H 0.157 0.843 23 H 0.080 0.920 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.087 0.913 27 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.419 -4.384 0.566 5.039 hybrid contribution -0.228 -0.094 0.214 0.327 sum -2.647 -4.478 0.780 5.260 Atomic orbital electron populations 1.70107 1.07448 1.28690 1.25898 1.26206 0.95096 1.01678 0.93601 0.86138 0.79925 0.79140 0.80286 1.18560 1.19950 1.18579 1.19395 0.95027 0.87849 1.39615 0.88687 1.19929 0.85909 0.90840 0.88368 1.68649 1.40570 0.98439 1.23629 1.22658 0.90002 0.95789 0.90051 1.19266 0.94934 0.92133 1.27267 1.21218 0.94827 0.93849 0.94556 1.24467 1.03019 0.97420 1.00402 1.22029 0.97925 0.98279 0.81633 1.89062 1.93586 1.24003 1.22721 1.22202 0.98323 0.80910 0.98945 1.23021 0.98895 0.87642 0.89974 1.69350 1.08078 1.26517 1.18414 0.90981 0.85299 0.84327 0.91960 0.89960 0.89197 0.91301 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.86 11.40 55.56 0.63 -17.22 15 2 C 0.06 1.53 5.50 -17.33 -0.10 1.44 15 3 Si 0.92 17.86 29.56 -169.99 -5.03 12.84 15 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 15 5 H -0.27 -5.13 7.11 56.52 0.40 -4.72 15 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 15 7 C -0.39 -10.30 9.35 -37.83 -0.35 -10.65 15 8 H 0.10 2.42 7.85 -52.48 -0.41 2.01 15 9 C 0.38 10.63 7.35 -158.13 -1.16 9.47 15 10 N -0.59 -15.59 10.33 -12.37 -0.13 -15.72 15 11 C 0.19 4.33 11.10 -16.76 -0.19 4.15 15 12 C -0.33 -7.05 5.79 -104.41 -0.60 -7.65 15 13 C -0.04 -0.77 5.73 -102.32 -0.59 -1.36 15 14 C -0.23 -3.73 11.05 -35.64 -0.39 -4.12 15 15 C 0.08 1.08 7.64 36.25 0.28 1.36 15 16 O -0.37 -6.11 11.79 -35.23 -0.42 -6.53 15 17 C 0.07 1.18 7.62 36.25 0.28 1.45 15 18 C 0.18 4.26 11.10 -16.76 -0.19 4.07 15 19 N -0.51 -13.74 7.82 -12.37 -0.10 -13.84 15 20 H 0.28 6.36 8.29 -40.82 -0.34 6.02 15 21 H 0.13 2.56 8.06 -52.49 -0.42 2.13 15 22 H 0.14 2.08 8.06 -52.48 -0.42 1.66 15 23 H 0.06 0.78 8.14 -51.93 -0.42 0.35 15 24 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 25 H 0.09 1.43 8.14 -51.92 -0.42 1.01 15 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 27 H 0.13 2.65 8.06 -52.49 -0.42 2.22 15 LS Contribution 247.31 15.07 3.73 3.73 Total: -1.00 -29.12 247.31 -6.83 -35.94 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -2.51 Total: 2.66 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -3.02 Total: -1.85 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.41 Total: -46.78 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.42 Total: -6.53 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.12 -6.83 -35.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239480945.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.992 kcal (2) G-P(sol) polarization free energy of solvation -29.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds