Wall clock time and date at job start Sun Mar 29 2020 21:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47287 * 2 1 4 4 C 1.50697 * 109.47487 * 180.02562 * 3 2 1 5 5 C 1.32680 * 119.99630 * 124.99474 * 4 3 2 6 6 C 1.47691 * 119.99612 * 179.97438 * 5 4 3 7 7 C 1.40227 * 120.00575 * 180.02562 * 6 5 4 8 8 N 1.32147 * 120.27407 * 179.97438 * 7 6 5 9 9 C 1.31896 * 120.30449 * 0.02562 * 8 7 6 10 10 C 1.40845 * 120.00426 * 0.02562 * 9 8 7 11 11 C 1.41317 * 120.13614 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00086 * 353.78432 * 11 10 9 13 13 C 1.40047 * 120.00005 * 173.77535 * 11 10 9 14 14 N 1.30726 * 119.99873 * 6.33164 * 13 11 10 15 15 Si 1.86796 * 119.99882 * 186.32617 * 13 11 10 16 16 H 1.48491 * 109.47230 * 94.99013 * 15 13 11 17 17 H 1.48505 * 109.46869 * 214.98819 * 15 13 11 18 18 H 1.48498 * 109.47366 * 334.98742 * 15 13 11 19 19 N 1.32675 * 120.00600 * 359.73423 * 6 5 4 20 20 H 1.09002 * 109.46799 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46977 * 299.99726 * 1 2 3 22 22 H 1.09000 * 109.47403 * 60.00330 * 1 2 3 23 23 H 1.09001 * 109.47213 * 120.00432 * 2 1 3 24 24 H 1.09001 * 109.46977 * 240.00273 * 2 1 3 25 25 H 1.09001 * 109.46890 * 300.00627 * 3 2 1 26 26 H 1.08997 * 109.47125 * 59.99764 * 3 2 1 27 27 H 1.07991 * 119.99804 * 305.00636 * 4 3 2 28 28 H 1.08001 * 120.00197 * 0.02562 * 5 4 3 29 29 H 1.08003 * 119.86721 * 0.02562 * 7 6 5 30 30 H 1.08002 * 120.00033 * 180.02562 * 9 8 7 31 31 H 0.96998 * 120.00137 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2099 2.1017 -0.9422 6 6 5.6868 2.1022 -0.9424 7 6 6.3877 2.7993 -1.9371 8 7 7.7091 2.8037 -1.9421 9 6 8.3804 2.1523 -1.0122 10 6 7.6889 1.4473 -0.0080 11 6 8.4053 0.7480 0.9894 12 1 9.4806 0.6689 0.9267 13 6 7.7210 0.1576 2.0592 14 7 6.4139 0.1455 2.0720 15 14 8.6760 -0.6129 3.4676 16 1 8.8199 0.3750 4.5669 17 1 7.9459 -1.8059 3.9666 18 1 10.0214 -1.0203 2.9890 19 7 6.3507 1.4480 0.0017 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.6766 1.9563 -0.8899 26 1 1.6767 1.9563 0.8899 27 1 4.0873 0.9059 0.7651 28 1 3.6695 2.6385 -1.7078 29 1 5.8452 3.3354 -2.7018 30 1 9.4603 2.1596 -1.0208 31 1 5.9398 -0.2630 2.8131 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242252368.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:51 Heat of formation + Delta-G solvation = 31.165663 kcal Electronic energy + Delta-G solvation = -13867.214394 eV Core-core repulsion = 11533.961208 eV Total energy + Delta-G solvation = -2333.253186 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.84992 -35.77637 -34.03964 -33.00516 -31.28737 -29.67066 -26.55475 -25.67379 -22.74082 -21.83198 -20.78764 -18.72548 -17.58318 -15.77640 -15.17587 -15.05083 -14.90675 -14.21386 -13.50015 -13.06300 -12.85514 -12.83700 -12.14635 -11.58027 -11.46374 -11.36858 -11.29356 -10.99980 -10.77042 -10.62874 -10.42934 -10.12145 -9.87043 -9.61546 -9.46423 -8.48766 -7.42103 -7.30745 -6.51950 -4.68604 2.04395 2.82357 3.01759 3.05227 3.19556 3.56406 3.83841 4.69120 5.12515 5.21878 5.31807 5.62721 5.70029 5.82385 5.85483 5.97384 5.99189 6.00091 6.15799 6.26969 6.37556 6.42310 6.53186 6.67806 6.95571 7.04934 7.14668 7.48277 7.58248 7.75058 8.06042 8.43074 8.67095 9.26650 9.85207 10.12748 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.020711 B = 0.009357 C = 0.006568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.646204 B = 2991.722560 C = 4261.755725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.090 4.090 4 C -0.126 4.126 5 C -0.118 4.118 6 C 0.132 3.868 7 C -0.111 4.111 8 N -0.432 5.432 9 C -0.069 4.069 10 C 0.209 3.791 11 C -0.416 4.416 12 H 0.090 0.910 13 C 0.068 3.932 14 N -0.712 5.712 15 Si 0.912 3.088 16 H -0.268 1.268 17 H -0.275 1.275 18 H -0.259 1.259 19 N -0.446 5.446 20 H 0.050 0.950 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.142 0.858 28 H 0.107 0.893 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.432 -1.333 0.759 7.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.127 4.127 4 C -0.146 4.146 5 C -0.137 4.137 6 C -0.015 4.015 7 C -0.270 4.270 8 N -0.144 5.144 9 C -0.239 4.239 10 C 0.082 3.918 11 C -0.448 4.448 12 H 0.108 0.892 13 C -0.158 4.158 14 N -0.333 5.333 15 Si 0.736 3.264 16 H -0.193 1.193 17 H -0.200 1.200 18 H -0.183 1.183 19 N -0.164 5.164 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.160 0.840 28 H 0.125 0.875 29 H 0.143 0.857 30 H 0.149 0.851 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.613 -1.400 0.875 7.790 hybrid contribution 0.405 -0.264 0.566 0.744 sum -7.208 -1.663 1.441 7.537 Atomic orbital electron populations 1.21793 0.96376 1.01198 1.01459 1.21463 0.94876 0.96924 1.02519 1.20740 0.93747 0.96667 1.01569 1.23690 0.94077 0.97744 0.99135 1.21390 0.91237 1.01654 0.99419 1.21025 0.94179 0.93758 0.92492 1.22573 0.90751 1.10213 1.03466 1.67610 1.08633 1.15158 1.22988 1.23168 0.99138 1.04554 0.97012 1.19384 0.89100 0.91181 0.92113 1.19622 0.94925 1.26645 1.03631 0.89203 1.26111 0.95017 0.95166 0.99556 1.70056 1.07805 1.27686 1.27771 0.86227 0.80607 0.78994 0.80571 1.19348 1.20000 1.18319 1.69634 1.07384 1.18304 1.21122 0.93067 0.92946 0.93006 0.91685 0.91998 0.92247 0.91470 0.84033 0.87524 0.85732 0.85075 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 37.16 0.37 -1.26 16 2 C -0.12 -1.61 5.92 -26.73 -0.16 -1.77 16 3 C -0.09 -1.32 5.66 -27.88 -0.16 -1.47 16 4 C -0.13 -2.43 9.08 -36.20 -0.33 -2.75 16 5 C -0.12 -2.40 9.52 -37.61 -0.36 -2.76 16 6 C 0.13 3.28 6.71 -82.90 -0.56 2.72 16 7 C -0.11 -2.72 10.97 -16.67 -0.18 -2.90 16 8 N -0.43 -11.15 10.47 -12.00 -0.13 -11.28 16 9 C -0.07 -1.80 10.97 -16.54 -0.18 -1.98 16 10 C 0.21 5.74 6.54 -84.84 -0.56 5.19 16 11 C -0.42 -10.82 9.15 -37.73 -0.35 -11.16 16 12 H 0.09 2.15 7.86 -52.49 -0.41 1.74 16 13 C 0.07 1.65 5.49 -17.34 -0.10 1.56 16 14 N -0.71 -18.01 11.51 55.55 0.64 -17.37 16 15 Si 0.91 17.90 29.56 -169.99 -5.03 12.88 16 16 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 17 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 18 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 19 N -0.45 -12.18 7.04 -7.60 -0.05 -12.23 16 20 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.79 7.81 -51.93 -0.41 0.39 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.14 3.18 7.39 -52.49 -0.39 2.79 16 28 H 0.11 1.85 7.87 -52.49 -0.41 1.44 16 29 H 0.13 2.66 8.06 -52.48 -0.42 2.23 16 30 H 0.13 3.07 8.06 -52.49 -0.42 2.65 16 31 H 0.28 6.27 8.29 -40.82 -0.34 5.93 16 LS Contribution 274.01 15.07 4.13 4.13 Total: -1.00 -28.79 274.01 -7.12 -35.91 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -4.13 Total: 4.56 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -2.55 Total: -16.60 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.46 Total: -40.88 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.79 -7.12 -35.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242252368.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.080 kcal (2) G-P(sol) polarization free energy of solvation -28.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds