Wall clock time and date at job start Sun Mar 29 2020 21:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47287 * 2 1 4 4 C 1.50697 * 109.47487 * 180.02562 * 3 2 1 5 5 C 1.32680 * 119.99630 * 124.99474 * 4 3 2 6 6 C 1.47691 * 119.99612 * 179.97438 * 5 4 3 7 7 C 1.40227 * 120.00575 * 180.02562 * 6 5 4 8 8 N 1.32147 * 120.27407 * 179.97438 * 7 6 5 9 9 C 1.31896 * 120.30449 * 0.02562 * 8 7 6 10 10 C 1.40845 * 120.00426 * 0.02562 * 9 8 7 11 11 C 1.41317 * 120.13614 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00086 * 353.78432 * 11 10 9 13 13 C 1.40047 * 120.00005 * 173.77535 * 11 10 9 14 14 N 1.30726 * 119.99873 * 6.33164 * 13 11 10 15 15 Si 1.86796 * 119.99882 * 186.32617 * 13 11 10 16 16 H 1.48491 * 109.47230 * 94.99013 * 15 13 11 17 17 H 1.48505 * 109.46869 * 214.98819 * 15 13 11 18 18 H 1.48498 * 109.47366 * 334.98742 * 15 13 11 19 19 N 1.32675 * 120.00600 * 359.73423 * 6 5 4 20 20 H 1.09002 * 109.46799 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46977 * 299.99726 * 1 2 3 22 22 H 1.09000 * 109.47403 * 60.00330 * 1 2 3 23 23 H 1.09001 * 109.47213 * 120.00432 * 2 1 3 24 24 H 1.09001 * 109.46977 * 240.00273 * 2 1 3 25 25 H 1.09001 * 109.46890 * 300.00627 * 3 2 1 26 26 H 1.08997 * 109.47125 * 59.99764 * 3 2 1 27 27 H 1.07991 * 119.99804 * 305.00636 * 4 3 2 28 28 H 1.08001 * 120.00197 * 0.02562 * 5 4 3 29 29 H 1.08003 * 119.86721 * 0.02562 * 7 6 5 30 30 H 1.08002 * 120.00033 * 180.02562 * 9 8 7 31 31 H 0.96998 * 120.00137 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2099 2.1017 -0.9422 6 6 5.6868 2.1022 -0.9424 7 6 6.3877 2.7993 -1.9371 8 7 7.7091 2.8037 -1.9421 9 6 8.3804 2.1523 -1.0122 10 6 7.6889 1.4473 -0.0080 11 6 8.4053 0.7480 0.9894 12 1 9.4806 0.6689 0.9267 13 6 7.7210 0.1576 2.0592 14 7 6.4139 0.1455 2.0720 15 14 8.6760 -0.6129 3.4676 16 1 8.8199 0.3750 4.5669 17 1 7.9459 -1.8059 3.9666 18 1 10.0214 -1.0203 2.9890 19 7 6.3507 1.4480 0.0017 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.6766 1.9563 -0.8899 26 1 1.6767 1.9563 0.8899 27 1 4.0873 0.9059 0.7651 28 1 3.6695 2.6385 -1.7078 29 1 5.8452 3.3354 -2.7018 30 1 9.4603 2.1596 -1.0208 31 1 5.9398 -0.2630 2.8131 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242252368.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:51 Heat of formation + Delta-G solvation = 14.857830 kcal Electronic energy + Delta-G solvation = -13867.921554 eV Core-core repulsion = 11533.961208 eV Total energy + Delta-G solvation = -2333.960347 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.76735 -37.10146 -35.93372 -34.58433 -33.09405 -31.31828 -28.26527 -27.23551 -24.51728 -23.56409 -22.05768 -20.33043 -19.47633 -17.57775 -17.07126 -16.84724 -16.31482 -15.57006 -14.94580 -14.89737 -14.32931 -14.06237 -13.41214 -13.37328 -13.21400 -12.99881 -12.58159 -12.44605 -12.13408 -12.05424 -11.75661 -11.74034 -11.51001 -11.39757 -11.33918 -10.32440 -9.34954 -9.09266 -8.39136 -6.66332 0.24104 1.01624 1.40315 1.50873 1.55208 1.84060 2.18468 2.82298 3.77340 3.85632 4.03974 4.13230 4.18525 4.28709 4.46358 4.53670 4.66593 4.79832 4.89210 4.94157 5.03624 5.10737 5.15802 5.25029 5.27770 5.34416 5.50428 5.73843 5.87830 6.04898 6.20127 6.50437 6.72233 7.30745 7.90460 8.30379 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.020711 B = 0.009357 C = 0.006568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.646204 B = 2991.722560 C = 4261.755725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C -0.083 4.083 4 C -0.110 4.110 5 C -0.138 4.138 6 C 0.119 3.881 7 C -0.123 4.123 8 N -0.442 5.442 9 C -0.095 4.095 10 C 0.177 3.823 11 C -0.441 4.441 12 H 0.100 0.900 13 C 0.023 3.977 14 N -0.741 5.741 15 Si 0.994 3.006 16 H -0.264 1.264 17 H -0.266 1.266 18 H -0.252 1.252 19 N -0.475 5.475 20 H 0.059 0.941 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.143 0.857 29 H 0.156 0.844 30 H 0.146 0.854 31 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.719 -1.605 1.318 8.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.120 4.120 4 C -0.130 4.130 5 C -0.157 4.157 6 C -0.028 4.028 7 C -0.282 4.282 8 N -0.153 5.153 9 C -0.263 4.263 10 C 0.050 3.950 11 C -0.472 4.472 12 H 0.118 0.882 13 C -0.201 4.201 14 N -0.362 5.362 15 Si 0.813 3.187 16 H -0.189 1.189 17 H -0.191 1.191 18 H -0.175 1.175 19 N -0.193 5.193 20 H 0.078 0.922 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.123 0.877 28 H 0.161 0.839 29 H 0.173 0.827 30 H 0.163 0.837 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.891 -1.665 1.416 9.156 hybrid contribution 0.717 -0.183 0.386 0.835 sum -8.174 -1.849 1.803 8.572 Atomic orbital electron populations 1.21742 0.93891 1.02174 1.02423 1.21448 0.96997 0.95769 1.01559 1.20770 0.90041 0.97915 1.03269 1.23812 0.96770 0.95404 0.97027 1.21597 0.89077 1.03614 1.01415 1.21747 0.96479 0.92754 0.91806 1.23103 0.90590 1.10361 1.04194 1.67619 1.09473 1.15240 1.23003 1.23361 0.99930 1.05543 0.97463 1.19857 0.89812 0.92173 0.93147 1.20052 0.95691 1.27150 1.04337 0.88159 1.27083 0.95969 0.95191 1.01840 1.70141 1.09439 1.27755 1.28871 0.85012 0.79144 0.78035 0.76487 1.18856 1.19055 1.17528 1.69649 1.07558 1.19642 1.22490 0.92180 0.92111 0.91898 0.92911 0.92864 0.90039 0.90062 0.87677 0.83907 0.82658 0.83681 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.91 71.98 0.71 -1.99 16 2 C -0.12 -3.00 5.92 30.59 0.18 -2.82 16 3 C -0.08 -2.23 5.66 29.85 0.17 -2.06 16 4 C -0.11 -4.14 9.08 24.52 0.22 -3.92 16 5 C -0.14 -5.52 9.52 23.60 0.22 -5.29 16 6 C 0.12 5.96 6.71 42.00 0.28 6.24 16 7 C -0.12 -6.03 10.97 85.13 0.93 -5.09 16 8 N -0.44 -23.06 10.47 -191.89 -2.01 -25.07 16 9 C -0.09 -5.06 10.97 85.32 0.94 -4.13 16 10 C 0.18 9.98 6.54 40.24 0.26 10.25 16 11 C -0.44 -23.39 9.15 23.47 0.21 -23.18 16 12 H 0.10 4.88 7.86 -2.91 -0.02 4.86 16 13 C 0.02 1.11 5.49 85.30 0.47 1.58 16 14 N -0.74 -38.11 11.51 21.84 0.25 -37.86 16 15 Si 0.99 36.39 29.56 68.60 2.03 38.42 16 16 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 17 H -0.27 -9.28 7.11 99.48 0.71 -8.58 16 18 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 19 N -0.47 -26.64 7.04 -177.97 -1.25 -27.89 16 20 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 21 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.08 1.88 7.81 -2.39 -0.02 1.86 16 26 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.11 4.83 7.39 -2.92 -0.02 4.81 16 28 H 0.14 4.57 7.87 -2.91 -0.02 4.55 16 29 H 0.16 6.40 8.06 -2.91 -0.02 6.38 16 30 H 0.15 7.00 8.06 -2.91 -0.02 6.98 16 31 H 0.28 13.07 8.29 -92.71 -0.77 12.30 16 Total: -1.00 -63.38 274.01 4.73 -58.65 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 1.10 Total: 24.15 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 4.61 Total: -30.41 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -3.01 Total: -90.81 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Total: -63.38 4.73 -58.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242252368.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.513 kcal (2) G-P(sol) polarization free energy of solvation -63.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds