Wall clock time and date at job start Sun Mar 29 2020 21:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86801 * 119.99746 * 2 1 4 4 H 1.48500 * 109.47009 * 239.99555 * 3 2 1 5 5 H 1.48499 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47523 * 119.99483 * 3 2 1 7 7 C 1.38649 * 120.00523 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00605 * 180.02562 * 7 2 1 9 9 O 1.34829 * 119.99846 * 0.02562 * 7 2 1 10 10 C 1.35750 * 117.00222 * 185.06121 * 9 7 2 11 11 C 1.38904 * 120.06744 * 354.39845 * 10 9 7 12 12 C 1.38075 * 119.93182 * 180.02562 * 11 10 9 13 13 C 1.38329 * 120.06753 * 0.02562 * 12 11 10 14 14 C 1.38272 * 120.13902 * 0.02562 * 13 12 11 15 15 C 1.38126 * 120.07112 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.03707 * 179.97438 * 15 14 13 17 17 C 1.52995 * 109.47378 * 265.02616 * 16 15 14 18 18 C 1.53003 * 117.49458 * 243.74827 * 17 16 15 19 19 C 1.52994 * 117.50009 * 175.08856 * 17 16 15 20 20 H 0.96994 * 120.00237 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.03294 * 0.02562 * 11 10 9 22 22 H 1.08000 * 119.96534 * 179.72834 * 12 11 10 23 23 H 1.08006 * 119.92689 * 179.97438 * 13 12 11 24 24 H 1.08005 * 119.96942 * 180.02562 * 14 13 12 25 25 H 1.09007 * 109.46726 * 25.02603 * 16 15 14 26 26 H 1.08998 * 109.47193 * 145.01842 * 16 15 14 27 27 H 1.09002 * 115.55079 * 29.40980 * 17 16 15 28 28 H 1.08992 * 117.50231 * 359.97438 * 18 17 16 29 29 H 1.09002 * 117.49552 * 145.02108 * 18 17 16 30 30 H 1.08999 * 117.50025 * 214.97298 * 19 17 16 31 31 H 1.08999 * 117.50142 * 359.97053 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1032 1.6966 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0701 -3.5045 0.1078 11 6 3.4576 -3.4394 0.0940 12 6 4.2026 -4.5968 0.2028 13 6 3.5688 -5.8202 0.3248 14 6 2.1878 -5.8884 0.3377 15 6 1.4368 -4.7342 0.2293 16 6 -0.0682 -4.8095 0.2429 17 6 -0.5900 -4.8489 -1.1948 18 6 -1.4553 -3.6777 -1.6646 19 6 -2.0943 -5.0424 -1.3954 20 1 -0.4850 0.8400 -0.0004 21 1 3.9530 -2.4845 -0.0016 22 1 5.2814 -4.5472 0.1877 23 1 4.1538 -6.7241 0.4092 24 1 1.6957 -6.8451 0.4335 25 1 -0.3821 -5.7116 0.7682 26 1 -0.4712 -3.9339 0.7519 27 1 0.0781 -5.3057 -1.9250 28 1 -1.6532 -2.8795 -0.9493 29 1 -1.3568 -3.3645 -2.7040 30 1 -2.4161 -5.6262 -2.2577 31 1 -2.7123 -5.1422 -0.5031 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250037238.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:06 Heat of formation + Delta-G solvation = -3.818184 kcal Electronic energy + Delta-G solvation = -14357.082993 eV Core-core repulsion = 11990.020042 eV Total energy + Delta-G solvation = -2367.062951 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.84901 -38.44323 -37.77369 -34.25406 -33.05302 -30.54555 -27.93129 -27.16531 -23.37721 -23.02217 -22.57207 -21.18161 -19.73498 -18.62637 -16.78715 -16.44142 -16.27845 -15.75978 -15.62325 -15.03360 -14.89749 -14.44555 -13.80017 -13.56071 -13.28335 -13.06689 -12.59589 -12.36765 -12.32726 -12.21011 -12.18406 -12.02481 -11.31301 -10.93962 -10.76217 -10.66798 -9.55242 -8.86870 -8.41967 -6.07843 0.62137 0.81987 1.34050 1.44140 1.48760 2.18778 2.87344 2.99268 3.22610 3.60282 3.87045 4.06101 4.08576 4.24505 4.28604 4.40825 4.57126 4.66157 4.80147 4.81123 4.96662 4.99879 5.09296 5.16610 5.21274 5.33152 5.36911 5.50303 5.74351 5.80259 5.85219 6.08091 6.32663 7.02993 7.86278 8.79620 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.022230 B = 0.011369 C = 0.007811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.242357 B = 2462.173098 C = 3583.848062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.016 4.016 3 Si 1.009 2.991 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.415 4.415 8 H 0.094 0.906 9 O -0.212 6.212 10 C 0.115 3.885 11 C -0.254 4.254 12 C -0.081 4.081 13 C -0.194 4.194 14 C -0.073 4.073 15 C -0.165 4.165 16 C -0.027 4.027 17 C -0.143 4.143 18 C -0.190 4.190 19 C -0.153 4.153 20 H 0.270 0.730 21 H 0.113 0.887 22 H 0.139 0.861 23 H 0.148 0.852 24 H 0.150 0.850 25 H 0.092 0.908 26 H 0.036 0.964 27 H 0.098 0.902 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 -9.409 -0.815 9.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.215 4.215 3 Si 0.830 3.170 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.185 1.185 7 C -0.491 4.491 8 H 0.111 0.889 9 O -0.118 6.118 10 C 0.064 3.936 11 C -0.273 4.273 12 C -0.099 4.099 13 C -0.212 4.212 14 C -0.091 4.091 15 C -0.166 4.166 16 C -0.065 4.065 17 C -0.162 4.162 18 C -0.228 4.228 19 C -0.189 4.189 20 H 0.079 0.921 21 H 0.131 0.869 22 H 0.157 0.843 23 H 0.166 0.834 24 H 0.168 0.832 25 H 0.110 0.890 26 H 0.055 0.945 27 H 0.116 0.884 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.133 0.867 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.080 -9.222 -0.835 9.491 hybrid contribution 0.397 1.378 -0.041 1.435 sum 2.477 -7.844 -0.876 8.273 Atomic orbital electron populations 1.70166 1.07615 1.28422 1.48628 1.26381 0.96776 1.02177 0.96137 0.84777 0.77515 0.75093 0.79660 1.18520 1.19645 1.18525 1.21696 0.92254 0.81952 1.53207 0.88901 1.83973 1.34971 1.11878 1.80959 1.19809 0.91207 0.88130 0.94424 1.21309 0.93502 1.00034 1.12478 1.21141 1.00036 0.91786 0.96964 1.21149 0.94479 0.97878 1.07687 1.21046 0.94050 0.96703 0.97279 1.19335 0.96198 0.90855 1.10215 1.19805 0.90659 1.01188 0.94807 1.22178 0.93636 1.02944 0.97400 1.22807 1.06502 0.92338 1.01120 1.23073 0.94047 0.97925 1.03882 0.92127 0.86925 0.84330 0.83382 0.83233 0.88972 0.94495 0.88354 0.91632 0.89892 0.86659 0.88167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.36 13.67 21.61 0.30 -55.06 16 2 C -0.02 -0.94 5.49 84.83 0.47 -0.47 16 3 Si 1.01 43.50 29.55 68.60 2.03 45.52 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 7 C -0.41 -24.29 9.49 67.92 0.64 -23.65 16 8 H 0.09 5.09 5.20 -2.91 -0.02 5.08 16 9 O -0.21 -12.55 8.90 -22.73 -0.20 -12.75 16 10 C 0.11 5.75 6.62 22.58 0.15 5.90 16 11 C -0.25 -11.40 9.17 22.39 0.21 -11.19 16 12 C -0.08 -2.87 10.04 22.25 0.22 -2.64 16 13 C -0.19 -6.03 10.04 22.30 0.22 -5.80 16 14 C -0.07 -2.42 9.68 22.25 0.22 -2.21 16 15 C -0.16 -6.90 5.11 -19.74 -0.10 -7.00 16 16 C -0.03 -1.07 5.35 29.85 0.16 -0.91 16 17 C -0.14 -5.23 5.72 -10.80 -0.06 -5.30 16 18 C -0.19 -7.60 10.18 30.62 0.31 -7.29 16 19 C -0.15 -4.54 10.25 30.62 0.31 -4.23 16 20 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 21 H 0.11 5.19 5.64 -2.91 -0.02 5.17 16 22 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 23 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 24 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 25 H 0.09 2.89 8.05 -2.38 -0.02 2.87 16 26 H 0.04 1.72 7.43 -2.39 -0.02 1.70 16 27 H 0.10 3.50 8.07 -2.39 -0.02 3.48 16 28 H 0.06 3.14 8.03 -2.39 -0.02 3.12 16 29 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 30 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -67.97 269.92 5.99 -61.98 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 1.11 Total: 25.10 kcal Atomic # 6 Polarization: -67.54 SS G_CDS: 2.75 Total: -64.79 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.30 Total: -55.06 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.20 Total: -12.75 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -67.97 5.99 -61.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250037238.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.162 kcal (2) G-P(sol) polarization free energy of solvation -67.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds