Wall clock time and date at job start Sun Mar 29 2020 21:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99871 * 2 1 3 5 5 C 1.50706 * 109.46925 * 119.99837 * 2 1 3 6 6 C 1.38252 * 120.00298 * 0.02562 * 5 2 1 7 7 C 1.38215 * 120.00278 * 179.97438 * 6 5 2 8 8 C 1.38265 * 119.99522 * 359.97438 * 7 6 5 9 9 C 1.38207 * 120.00113 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99801 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47027 * 90.00279 * 10 9 8 12 12 H 1.07997 * 120.00077 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99902 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00141 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00009 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47547 * 89.99726 * 15 13 11 17 17 H 1.48504 * 109.47242 * 209.99776 * 15 13 11 18 18 H 1.48493 * 109.47277 * 329.99511 * 15 13 11 19 19 C 1.38216 * 119.99609 * 179.72571 * 5 2 1 20 20 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 21 21 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 22 22 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.47280 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.46777 * 300.00347 * 3 2 1 25 25 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 26 26 H 1.09004 * 109.47261 * 299.99863 * 4 2 1 27 27 H 1.09002 * 109.47153 * 60.00035 * 4 2 1 28 28 H 1.09001 * 109.46832 * 179.97438 * 4 2 1 29 29 H 1.08005 * 119.99944 * 359.97438 * 6 5 2 30 30 H 1.07999 * 120.00177 * 180.02562 * 7 6 5 31 31 H 1.08001 * 119.99473 * 180.02562 * 8 7 6 32 32 H 1.08999 * 109.46861 * 210.00048 * 10 9 8 33 33 H 1.08994 * 109.47332 * 330.00148 * 10 9 8 34 34 H 0.97001 * 120.00317 * 180.02562 * 14 13 11 35 35 H 1.07996 * 119.99963 * 0.02562 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1339 -1.2363 2.1403 7 6 1.5946 -1.8883 3.2686 8 6 2.9540 -2.0150 3.4871 9 6 3.8521 -1.4893 2.5776 10 6 5.3337 -1.6270 2.8161 11 6 5.8277 -2.9030 2.1846 12 1 5.1377 -3.5498 1.6631 13 6 7.1603 -3.2453 2.2735 14 7 8.0005 -2.4579 2.9089 15 14 7.7725 -4.8273 1.4914 16 1 8.1910 -4.5582 0.0922 17 1 8.9305 -5.3454 2.2634 18 1 6.6829 -5.8361 1.4968 19 6 3.3912 -0.8416 1.4464 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 3.1299 1.4425 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6767 -1.7490 -1.2492 27 1 1.6767 -0.2074 -2.1392 28 1 3.1300 -0.7208 -1.2494 29 1 0.0721 -1.1376 1.9694 30 1 0.8928 -2.2994 3.9791 31 1 3.3140 -2.5248 4.3685 32 1 5.8535 -0.7775 2.3731 33 1 5.5283 -1.6532 3.8882 34 1 8.9382 -2.6985 2.9712 35 1 4.0930 -0.4347 0.7334 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250056223.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:47 Heat of formation + Delta-G solvation = -7.923592 kcal Electronic energy + Delta-G solvation = -14443.459586 eV Core-core repulsion = 12212.051706 eV Total energy + Delta-G solvation = -2231.407880 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 218.137 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.31538 -36.14073 -33.25751 -31.14487 -29.44242 -27.78085 -27.04440 -26.41113 -23.16041 -22.30310 -20.54198 -18.27197 -16.37173 -16.12154 -14.71051 -14.58938 -14.37029 -14.06227 -13.56227 -13.16362 -12.59506 -12.52893 -12.19964 -11.87573 -11.58052 -11.49576 -11.29898 -11.25836 -11.09516 -10.77178 -10.68339 -10.58544 -10.30305 -9.96462 -9.47950 -9.38342 -8.41333 -8.04383 -7.72158 -6.03184 -4.06770 2.09348 2.20655 3.30679 3.36828 3.41342 4.39425 4.57863 4.88813 5.01260 5.20204 5.31398 5.53677 5.62689 5.68632 5.68953 5.78111 5.90927 6.00247 6.01904 6.06543 6.08358 6.20635 6.29436 6.35677 6.50215 6.55884 6.72416 6.86089 7.19702 7.24773 7.31260 7.53223 7.81638 7.90073 7.93084 8.34214 8.98651 9.56910 11.06789 Molecular weight = 218.14amu Principal moments of inertia in cm(-1) A = 0.033796 B = 0.007314 C = 0.006815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.310194 B = 3827.248852 C = 4107.366748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.027 4.027 3 C -0.137 4.137 4 C -0.138 4.138 5 C -0.077 4.077 6 C -0.152 4.152 7 C -0.124 4.124 8 C -0.130 4.130 9 C -0.033 4.033 10 C 0.047 3.953 11 C -0.510 4.510 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.118 4.118 20 H 0.056 0.944 21 H 0.051 0.949 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.027 0.973 33 H 0.028 0.972 34 H 0.262 0.738 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.879 4.729 -4.498 14.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 C -0.194 4.194 4 C -0.195 4.195 5 C -0.077 4.077 6 C -0.170 4.170 7 C -0.142 4.142 8 C -0.148 4.148 9 C -0.033 4.033 10 C 0.011 3.989 11 C -0.548 4.548 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.722 3.278 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.136 4.136 20 H 0.075 0.925 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.691 4.744 -4.447 14.260 hybrid contribution 0.473 -0.960 -0.339 1.123 sum -12.218 3.784 -4.786 13.657 Atomic orbital electron populations 1.21925 0.94811 1.01648 1.01274 1.19440 0.95050 0.94961 0.93284 1.21872 1.01580 0.94799 1.01165 1.21883 1.01746 1.00065 0.95826 1.19674 0.93581 0.99016 0.95445 1.20859 0.98656 1.01864 0.95589 1.21007 0.95555 1.00080 0.97528 1.21071 0.92594 1.00900 1.00196 1.20656 0.98565 0.91805 0.92230 1.18349 0.85127 0.97618 0.97837 1.21066 0.93398 1.05626 1.34721 0.92509 1.25009 0.96850 0.97080 0.95401 1.69960 1.03742 1.37346 1.42357 0.86550 0.78426 0.83546 0.79283 1.20592 1.21140 1.19813 1.20867 0.94067 1.00834 0.97837 0.92520 0.92950 0.92479 0.92167 0.92913 0.92741 0.92652 0.92965 0.92020 0.86931 0.87327 0.86725 0.95443 0.95412 0.92865 0.86740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 7.13 37.16 0.27 -1.33 16 2 C -0.03 -0.37 0.85 -155.66 -0.13 -0.51 16 3 C -0.14 -1.74 8.29 37.16 0.31 -1.43 16 4 C -0.14 -1.85 8.28 37.16 0.31 -1.54 16 5 C -0.08 -1.31 4.76 -104.62 -0.50 -1.81 16 6 C -0.15 -2.48 8.98 -39.58 -0.36 -2.84 16 7 C -0.12 -2.14 10.05 -39.58 -0.40 -2.53 16 8 C -0.13 -2.62 9.70 -39.58 -0.38 -3.01 16 9 C -0.03 -0.73 5.07 -104.63 -0.53 -1.26 16 10 C 0.05 1.25 5.10 -29.03 -0.15 1.10 16 11 C -0.51 -14.51 9.09 -34.44 -0.31 -14.82 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 15 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 19 C -0.12 -2.36 8.37 -39.58 -0.33 -2.69 16 20 H 0.06 0.63 7.51 -51.93 -0.39 0.24 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.65 7.51 -51.93 -0.39 0.26 16 23 H 0.06 0.81 7.40 -51.93 -0.38 0.43 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.89 7.37 -51.93 -0.38 0.51 16 29 H 0.11 1.55 5.90 -52.48 -0.31 1.24 16 30 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.11 2.26 8.06 -52.49 -0.42 1.84 16 32 H 0.03 0.75 8.09 -51.93 -0.42 0.33 16 33 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.11 2.28 7.10 -52.49 -0.37 1.90 16 LS Contribution 287.13 15.07 4.33 4.33 Total: -1.00 -29.63 287.13 -7.83 -37.46 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.57 Total: -1.46 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: -2.31 Total: -31.11 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.74 Total: -25.97 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.63 -7.83 -37.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056223.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.538 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds