Wall clock time and date at job start Sun Mar 29 2020 22:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00336 * 2 1 4 4 H 1.48502 * 109.47056 * 269.99371 * 3 2 1 5 5 H 1.48501 * 109.47351 * 29.99445 * 3 2 1 6 6 H 1.48495 * 109.47397 * 149.99746 * 3 2 1 7 7 C 1.37881 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00153 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99890 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47198 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46816 * 180.02562 * 10 9 7 12 12 C 1.38381 * 119.92545 * 270.01696 * 11 10 9 13 13 C 1.38339 * 120.29147 * 180.02562 * 12 11 10 14 14 C 1.37977 * 120.14762 * 359.70490 * 13 12 11 15 15 C 1.39555 * 119.84926 * 0.52925 * 14 13 12 16 16 C 1.47846 * 120.14561 * 179.76817 * 15 14 13 17 17 N 1.34777 * 119.99557 * 359.72046 * 16 15 14 18 18 O 1.21553 * 120.00154 * 179.72347 * 16 15 14 19 19 C 1.37935 * 119.93187 * 90.00425 * 11 10 9 20 20 H 0.97006 * 119.99934 * 0.02562 * 1 2 3 21 21 H 1.09008 * 109.47023 * 59.99583 * 9 7 2 22 22 H 1.09000 * 109.47052 * 300.00285 * 9 7 2 23 23 H 1.08990 * 109.47047 * 60.00002 * 10 9 7 24 24 H 1.09003 * 109.46953 * 300.00093 * 10 9 7 25 25 H 1.08004 * 119.85575 * 0.02562 * 12 11 10 26 26 H 1.08007 * 119.92505 * 179.97438 * 13 12 11 27 27 H 1.08001 * 120.07501 * 180.27443 * 14 13 12 28 28 H 0.97001 * 120.00485 * 0.02562 * 17 16 15 29 29 H 0.97005 * 119.99790 * 179.72357 * 17 16 15 30 30 H 1.07998 * 120.06859 * 0.02562 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4915 -4.9672 -0.0001 12 6 1.1456 -5.5652 1.1989 13 6 0.4542 -6.7634 1.2072 14 6 0.0997 -7.3671 0.0182 15 6 0.4498 -6.7718 -1.1945 16 6 0.0778 -7.4156 -2.4724 17 7 -0.5960 -8.5829 -2.4677 18 8 0.3797 -6.8923 -3.5271 19 6 1.1478 -5.5629 -1.1958 20 1 -0.4850 0.8401 -0.0004 21 1 0.6245 -2.5571 -0.8897 22 1 0.6239 -2.5567 0.8903 23 1 2.8717 -3.6044 0.8904 24 1 2.8718 -3.6044 -0.8895 25 1 1.4165 -5.0944 2.1324 26 1 0.1876 -7.2252 2.1464 27 1 -0.4439 -8.3003 0.0260 28 1 -0.8372 -9.0004 -1.6260 29 1 -0.8437 -9.0033 -3.3061 30 1 1.4186 -5.0952 -2.1308 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250058232.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:37 Heat of formation + Delta-G solvation = -35.352092 kcal Electronic energy + Delta-G solvation = -13767.278959 eV Core-core repulsion = 11333.422685 eV Total energy + Delta-G solvation = -2433.856274 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.94631 -38.15923 -34.34325 -33.58592 -32.04580 -30.78913 -28.92593 -25.06849 -23.95030 -22.07250 -20.91439 -19.72908 -17.89853 -16.69132 -16.23756 -15.81678 -14.74677 -14.66582 -14.52522 -14.42364 -13.53008 -12.93815 -12.57956 -12.53546 -12.07483 -11.48675 -11.20331 -10.92049 -10.83139 -10.52372 -10.03376 -9.82201 -9.76511 -9.65702 -9.11173 -8.72770 -8.34274 -8.27526 -5.99173 -4.02392 1.06835 1.63761 3.02001 3.33447 3.39519 3.42568 3.49995 4.10754 4.47077 4.85820 4.94691 5.11185 5.36621 5.45131 5.61778 5.71906 5.96138 6.17777 6.34928 6.49250 6.59720 6.62354 6.73088 6.94350 6.99249 7.21516 7.30285 7.67300 7.80177 8.00026 8.25609 8.40256 9.04408 9.61767 11.11944 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.041731 B = 0.005840 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.798017 B = 4793.362700 C = 5143.387573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.082 4.082 11 C -0.064 4.064 12 C -0.092 4.092 13 C -0.129 4.129 14 C -0.106 4.106 15 C -0.145 4.145 16 C 0.565 3.435 17 N -0.855 5.855 18 O -0.540 6.540 19 C -0.058 4.058 20 H 0.261 0.739 21 H 0.018 0.982 22 H 0.018 0.982 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.127 0.873 26 H 0.124 0.876 27 H 0.118 0.882 28 H 0.400 0.600 29 H 0.401 0.599 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.724 -16.819 1.463 16.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.119 4.119 11 C -0.064 4.064 12 C -0.110 4.110 13 C -0.147 4.147 14 C -0.125 4.125 15 C -0.148 4.148 16 C 0.352 3.648 17 N -0.420 5.420 18 O -0.417 6.417 19 C -0.076 4.076 20 H 0.070 0.930 21 H 0.037 0.963 22 H 0.036 0.964 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.145 0.855 26 H 0.142 0.858 27 H 0.136 0.864 28 H 0.229 0.771 29 H 0.232 0.768 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.599 -16.223 0.881 16.258 hybrid contribution 0.024 0.517 0.128 0.533 sum -0.574 -15.706 1.009 15.749 Atomic orbital electron populations 1.69972 1.06086 1.26642 1.50636 1.25023 0.94839 0.99276 0.95255 0.86582 0.79805 0.83402 0.78146 1.20624 1.21238 1.19848 1.21241 0.93072 0.90909 1.50877 0.92531 1.19096 0.93667 0.90459 0.97617 1.20885 0.98431 0.90882 1.01694 1.20417 0.97066 0.96715 0.92167 1.21353 0.96756 0.94566 0.98337 1.21013 0.99756 0.96288 0.97598 1.21068 1.00009 0.99434 0.91980 1.19780 1.04691 0.97990 0.92305 1.18410 0.76843 0.80338 0.89217 1.43755 1.60775 1.25103 1.12322 1.90815 1.54357 1.63652 1.32905 1.21239 0.94723 0.92697 0.98981 0.92966 0.96317 0.96393 0.91894 0.91873 0.85536 0.85847 0.86371 0.77106 0.76791 0.84750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.17 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.74 4.95 -27.88 -0.14 0.61 16 10 C -0.08 -1.68 5.28 -27.88 -0.15 -1.83 16 11 C -0.06 -1.15 5.13 -104.68 -0.54 -1.69 16 12 C -0.09 -1.42 9.69 -39.49 -0.38 -1.80 16 13 C -0.13 -1.63 10.03 -39.64 -0.40 -2.03 16 14 C -0.11 -1.30 9.54 -39.19 -0.37 -1.67 16 15 C -0.14 -2.20 5.87 -104.97 -0.62 -2.82 16 16 C 0.56 8.39 8.05 -12.33 -0.10 8.29 16 17 N -0.86 -8.06 8.82 30.53 0.27 -7.79 16 18 O -0.54 -10.28 17.18 5.32 0.09 -10.19 16 19 C -0.06 -1.03 9.24 -39.19 -0.36 -1.39 16 20 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 21 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 22 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 24 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 25 H 0.13 1.81 8.06 -52.48 -0.42 1.38 16 26 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 27 H 0.12 0.96 6.41 -52.49 -0.34 0.62 16 28 H 0.40 2.54 6.86 -40.82 -0.28 2.26 16 29 H 0.40 3.12 8.93 -40.82 -0.36 2.76 16 30 H 0.13 2.55 7.65 -52.49 -0.40 2.15 16 LS Contribution 266.98 15.07 4.02 4.02 Total: -1.00 -33.68 266.98 -6.82 -40.50 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -3.45 Total: 1.08 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -3.47 Total: -17.93 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 1.01 Total: -34.23 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -33.68 -6.82 -40.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058232.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.149 kcal (2) G-P(sol) polarization free energy of solvation -33.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds