Wall clock time and date at job start Sun Mar 29 2020 21:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38238 * 119.99519 * 2 1 4 4 C 1.38234 * 119.99675 * 179.72408 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28720 * 4 3 2 6 6 C 1.38237 * 119.99712 * 359.94731 * 5 4 3 7 7 C 1.50706 * 119.99744 * 180.02562 * 6 5 4 8 8 C 1.38228 * 120.00340 * 180.20275 * 2 1 3 9 9 C 1.50706 * 119.99981 * 0.02562 * 8 2 1 10 10 C 1.52995 * 109.47120 * 270.21556 * 9 8 2 11 11 C 1.53007 * 109.47228 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47375 * 180.02562 * 11 10 9 13 13 H 1.08011 * 119.99752 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00024 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99827 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99901 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46872 * 90.00004 * 16 14 12 18 18 H 1.48500 * 109.47093 * 209.99470 * 16 14 12 19 19 H 1.48499 * 109.47175 * 330.00214 * 16 14 12 20 20 H 1.09000 * 109.47366 * 89.99623 * 1 2 3 21 21 H 1.09000 * 109.46813 * 209.99281 * 1 2 3 22 22 H 1.09001 * 109.47363 * 329.99785 * 1 2 3 23 23 H 1.08002 * 120.00519 * 0.02562 * 3 2 1 24 24 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 25 25 H 1.07996 * 120.00471 * 179.97438 * 5 4 3 26 26 H 1.08998 * 109.46845 * 90.00731 * 7 6 5 27 27 H 1.08998 * 109.46732 * 210.00157 * 7 6 5 28 28 H 1.08993 * 109.47519 * 330.00649 * 7 6 5 29 29 H 1.08998 * 109.46741 * 30.21633 * 9 8 2 30 30 H 1.09001 * 109.46713 * 150.22038 * 9 8 2 31 31 H 1.08997 * 109.47822 * 300.00318 * 10 9 8 32 32 H 1.09005 * 109.47224 * 59.99920 * 10 9 8 33 33 H 1.08998 * 109.46810 * 300.00186 * 11 10 9 34 34 H 1.08997 * 109.46343 * 59.99795 * 11 10 9 35 35 H 0.97005 * 119.99442 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2717 0.0002 0.0055 6 6 3.5805 -1.1970 0.0006 7 6 4.3341 -2.5021 0.0010 8 6 2.1982 -1.1970 -0.0042 9 6 1.4447 -2.5022 -0.0094 10 6 1.1845 -2.9466 1.4312 11 6 0.4190 -4.2714 1.4260 12 6 0.1621 -4.7088 2.8450 13 1 0.5097 -4.1023 3.6684 14 6 -0.5166 -5.8832 3.0922 15 7 -0.9402 -6.6213 2.0896 16 14 -0.8344 -6.4257 4.8512 17 1 -2.1311 -5.8694 5.3142 18 1 -0.8826 -7.9087 4.9108 19 1 0.2577 -5.9303 5.7270 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8901 0.5137 22 1 -0.3634 0.8900 0.5139 23 1 1.6581 2.1326 0.0004 24 1 4.1204 2.1326 0.0100 25 1 5.3516 0.0002 0.0096 26 1 4.5118 -2.8187 1.0287 27 1 3.7470 -3.2607 -0.5166 28 1 5.2885 -2.3708 -0.5089 29 1 0.4942 -2.3709 -0.5265 30 1 2.0358 -3.2608 -0.5225 31 1 2.1350 -3.0778 1.9484 32 1 0.5935 -2.1879 1.9444 33 1 -0.5315 -4.1397 0.9090 34 1 1.0097 -5.0301 0.9127 35 1 -1.4174 -7.4478 2.2637 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250062918.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:00 Heat of formation + Delta-G solvation = -28.022103 kcal Electronic energy + Delta-G solvation = -14227.448213 eV Core-core repulsion = 11995.168796 eV Total energy + Delta-G solvation = -2232.279417 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 218.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.70430 -36.50906 -34.65417 -34.41858 -32.30636 -29.32345 -27.68809 -27.47199 -25.24469 -22.36737 -21.51424 -21.23398 -18.46931 -17.11407 -16.91099 -16.50006 -15.43366 -15.23161 -15.05483 -14.50233 -14.03066 -13.90440 -13.73857 -13.69183 -13.45555 -13.26124 -12.77907 -12.66967 -12.51856 -12.34405 -12.27529 -11.85071 -11.80598 -11.36056 -11.26627 -11.03817 -10.55440 -9.38397 -9.35948 -8.20063 -6.31346 0.52285 0.53242 1.39022 1.40415 1.51687 2.40623 2.87674 3.12594 3.89217 3.95034 4.11694 4.19019 4.23049 4.48318 4.50879 4.59011 4.69349 4.73522 4.80425 4.85186 4.91351 4.97961 5.05452 5.09177 5.20618 5.24427 5.38335 5.44366 5.54540 5.64446 5.73008 5.73875 5.86045 5.92614 6.22016 6.27499 6.85100 7.37777 8.91551 Molecular weight = 218.14amu Principal moments of inertia in cm(-1) A = 0.039617 B = 0.006033 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.596811 B = 4639.967888 C = 4879.083041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.095 4.095 3 C -0.133 4.133 4 C -0.124 4.124 5 C -0.133 4.133 6 C -0.096 4.096 7 C -0.118 4.118 8 C -0.095 4.095 9 C -0.077 4.077 10 C -0.083 4.083 11 C 0.026 3.974 12 C -0.544 4.544 13 H 0.056 0.944 14 C 0.001 3.999 15 N -0.932 5.932 16 Si 0.963 3.037 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.265 1.265 20 H 0.077 0.923 21 H 0.055 0.945 22 H 0.080 0.920 23 H 0.140 0.860 24 H 0.147 0.853 25 H 0.140 0.860 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.044 0.956 33 H -0.008 1.008 34 H -0.008 1.008 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.390 14.492 -4.790 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.095 4.095 3 C -0.151 4.151 4 C -0.141 4.141 5 C -0.151 4.151 6 C -0.096 4.096 7 C -0.174 4.174 8 C -0.095 4.095 9 C -0.114 4.114 10 C -0.120 4.120 11 C -0.011 4.011 12 C -0.582 4.582 13 H 0.074 0.926 14 C -0.197 4.197 15 N -0.573 5.573 16 Si 0.788 3.212 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.189 1.189 20 H 0.096 0.904 21 H 0.074 0.926 22 H 0.098 0.902 23 H 0.158 0.842 24 H 0.165 0.835 25 H 0.158 0.842 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.011 0.989 34 H 0.011 0.989 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.301 14.333 -4.830 17.253 hybrid contribution -0.449 -0.749 0.731 1.139 sum 7.852 13.583 -4.100 16.216 Atomic orbital electron populations 1.20870 0.90908 1.02994 1.02739 1.20025 0.96705 0.92897 0.99922 1.21264 0.94860 0.97454 1.01544 1.21403 0.94229 0.98694 0.99809 1.21262 1.00651 0.91661 1.01531 1.20024 0.93067 0.96555 0.99952 1.20871 1.00133 0.93950 1.02432 1.19819 0.93751 0.94777 1.01165 1.20627 0.99426 0.93965 0.97410 1.21312 0.98925 0.96821 0.94960 1.19015 0.94080 0.92608 0.95422 1.21689 1.35976 1.06791 0.93749 0.92609 1.25960 0.95358 0.96636 1.01725 1.70096 1.39395 1.14793 1.32992 0.85473 0.78897 0.77403 0.79446 1.19683 1.20518 1.18920 0.90422 0.92631 0.90159 0.84186 0.83520 0.84179 0.91600 0.91960 0.89741 0.91660 0.91326 0.93725 0.93698 0.98947 0.98916 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.15 9.19 71.24 0.65 -2.50 16 2 C -0.10 -2.77 5.88 -19.87 -0.12 -2.88 16 3 C -0.13 -3.21 9.70 22.27 0.22 -2.99 16 4 C -0.12 -2.72 10.05 22.27 0.22 -2.49 16 5 C -0.13 -3.20 9.70 22.27 0.22 -2.98 16 6 C -0.10 -2.78 5.88 -19.86 -0.12 -2.90 16 7 C -0.12 -3.11 9.61 71.24 0.68 -2.43 16 8 C -0.10 -3.07 5.13 -19.87 -0.10 -3.17 16 9 C -0.08 -2.82 4.24 29.85 0.13 -2.69 16 10 C -0.08 -3.60 5.00 30.59 0.15 -3.45 16 11 C 0.03 1.40 4.97 29.85 0.15 1.55 16 12 C -0.54 -31.92 9.11 25.60 0.23 -31.69 16 13 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 14 C 0.00 0.05 5.46 84.65 0.46 0.52 16 15 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 16 Si 0.96 45.02 29.54 68.60 2.03 47.04 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 20 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 21 H 0.05 1.73 5.84 -2.39 -0.01 1.72 16 22 H 0.08 1.78 8.09 -2.39 -0.02 1.76 16 23 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 24 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 25 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 26 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.06 1.77 5.95 -2.39 -0.01 1.76 16 28 H 0.08 1.76 8.08 -2.39 -0.02 1.74 16 29 H 0.06 2.36 6.72 -2.39 -0.02 2.35 16 30 H 0.07 2.48 5.95 -2.39 -0.01 2.46 16 31 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.04 1.95 7.38 -2.38 -0.02 1.94 16 33 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 34 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 35 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -65.85 287.00 6.14 -59.71 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 1.05 Total: 8.66 kcal Atomic # 6 Polarization: -60.89 SS G_CDS: 2.78 Total: -58.11 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.28 Total: -57.30 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -65.85 6.14 -59.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250062918.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.686 kcal (2) G-P(sol) polarization free energy of solvation -65.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds