Wall clock time and date at job start Sun Mar 29 2020 21:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47008 * 2 1 4 4 C 1.38253 * 119.99890 * 270.01705 * 3 2 1 5 5 C 1.38212 * 119.99859 * 179.97438 * 4 3 2 6 6 C 1.38255 * 120.00284 * 0.02562 * 5 4 3 7 7 C 1.38217 * 119.99740 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99801 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.46836 * 269.95075 * 8 7 6 10 10 C 1.52997 * 109.47110 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47250 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00469 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99854 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99686 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00144 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47202 * 89.99659 * 15 13 11 17 17 H 1.48505 * 109.47104 * 209.99418 * 15 13 11 18 18 H 1.48497 * 109.47034 * 329.99139 * 15 13 11 19 19 C 1.38215 * 119.99815 * 89.99868 * 3 2 1 20 20 H 1.09000 * 109.47148 * 60.00017 * 1 2 3 21 21 H 1.09005 * 109.47028 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47213 * 299.99878 * 1 2 3 23 23 H 1.08990 * 109.47328 * 239.99584 * 2 1 3 24 24 H 1.09006 * 109.47142 * 119.99509 * 2 1 3 25 25 H 1.08002 * 120.00364 * 0.02562 * 4 3 2 26 26 H 1.08000 * 119.99961 * 180.02562 * 5 4 3 27 27 H 1.07997 * 120.00435 * 180.02562 * 6 5 4 28 28 H 1.08994 * 109.46953 * 29.94909 * 8 7 6 29 29 H 1.08996 * 109.46834 * 149.95334 * 8 7 6 30 30 H 1.09002 * 109.47404 * 300.00282 * 9 8 7 31 31 H 1.09001 * 109.47638 * 60.00320 * 9 8 7 32 32 H 1.09005 * 109.46857 * 299.99453 * 10 9 8 33 33 H 1.08999 * 109.47489 * 59.99988 * 10 9 8 34 34 H 0.96999 * 119.99759 * 180.02562 * 14 13 11 35 35 H 1.07995 * 120.00164 * 359.72517 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0727 -1.1973 5 6 2.7225 3.3759 -1.1973 6 6 2.9533 4.0276 0.0000 7 6 2.7243 3.3756 1.1970 8 6 2.9764 4.0857 2.5021 9 6 4.4215 3.8447 2.9429 10 6 4.6773 4.5651 4.2682 11 6 6.1009 4.3283 4.7021 12 1 6.7575 3.7240 4.0938 13 6 6.5652 4.8831 5.8759 14 7 7.8075 4.6759 6.2548 15 14 5.4295 5.9277 6.9286 16 1 4.7254 5.0609 7.9074 17 1 6.2272 6.9481 7.6550 18 1 4.4331 6.6046 6.0602 19 6 2.2626 2.0724 1.1970 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8898 24 1 1.8933 -0.5138 0.8901 25 1 2.0817 1.5638 -2.1327 26 1 2.9019 3.8853 -2.1326 27 1 3.3125 5.0461 0.0000 28 1 2.8097 5.1549 2.3720 29 1 2.2959 3.7017 3.2620 30 1 4.5882 2.7754 3.0730 31 1 5.1021 4.2287 2.1830 32 1 4.5106 5.6345 4.1385 33 1 3.9968 4.1808 5.0280 34 1 8.1340 5.0659 7.0807 35 1 2.0784 1.5648 2.1323 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065077.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:22 Heat of formation + Delta-G solvation = -13.663854 kcal Electronic energy + Delta-G solvation = -13790.788948 eV Core-core repulsion = 11559.132152 eV Total energy + Delta-G solvation = -2231.656796 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 218.137 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.41147 -35.29393 -33.80389 -32.41697 -30.57601 -29.36451 -27.07339 -23.94885 -23.47677 -21.66092 -20.27452 -19.77445 -16.70299 -16.28095 -15.58745 -14.97382 -14.21152 -14.18028 -13.74405 -13.43513 -13.21276 -12.92736 -12.66434 -12.31770 -11.95584 -11.65211 -11.57560 -11.28412 -11.02411 -10.83981 -10.77738 -10.58065 -9.87401 -9.67473 -9.61277 -9.15705 -8.61296 -8.50768 -8.34222 -6.01247 -3.98888 1.51708 1.56233 3.32618 3.39796 3.43895 3.90853 4.47916 4.73676 4.83789 5.07784 5.15534 5.26838 5.28987 5.32774 5.43120 5.57971 5.63751 5.72669 5.82012 5.86825 5.98749 6.04645 6.10705 6.23446 6.38550 6.52273 6.59944 6.69805 6.76678 6.92585 6.95426 7.19380 7.36159 7.48246 7.83326 8.58187 9.04363 9.61488 11.12440 Molecular weight = 218.14amu Principal moments of inertia in cm(-1) A = 0.043815 B = 0.005121 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.893802 B = 5466.762555 C = 5624.423344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.083 4.083 4 C -0.133 4.133 5 C -0.117 4.117 6 C -0.124 4.124 7 C -0.063 4.063 8 C -0.088 4.088 9 C -0.095 4.095 10 C -0.015 4.015 11 C -0.520 4.520 12 H 0.071 0.929 13 C 0.065 3.935 14 N -0.905 5.905 15 Si 0.881 3.119 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.265 1.265 19 C -0.117 4.117 20 H 0.054 0.946 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.015 0.985 33 H 0.011 0.989 34 H 0.262 0.738 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.390 -5.493 -13.364 20.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.083 4.083 4 C -0.151 4.151 5 C -0.135 4.135 6 C -0.142 4.142 7 C -0.063 4.063 8 C -0.125 4.125 9 C -0.132 4.132 10 C -0.052 4.052 11 C -0.558 4.558 12 H 0.089 0.911 13 C -0.136 4.136 14 N -0.545 5.545 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.190 1.190 19 C -0.135 4.135 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.133 0.867 26 H 0.135 0.865 27 H 0.138 0.862 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.262 -5.452 -13.220 20.196 hybrid contribution -0.364 0.585 0.630 0.934 sum -14.626 -4.867 -12.590 19.903 Atomic orbital electron populations 1.21741 0.94943 1.01435 1.02160 1.20529 0.96000 0.92958 1.02722 1.19840 0.99259 0.95984 0.93242 1.20900 1.01855 0.95184 0.97169 1.21069 0.99685 0.94940 0.97810 1.21074 1.00920 1.00238 0.92011 1.20132 0.96208 0.94231 0.95699 1.20826 0.99492 0.99472 0.92720 1.21440 0.92221 1.00768 0.98799 1.19604 0.97383 0.95547 0.92695 1.21179 0.95460 1.32051 1.07063 0.91102 1.25047 0.94951 0.96084 0.97510 1.69924 1.15393 1.45542 1.23604 0.86764 0.81142 0.80632 0.80664 1.20324 1.21426 1.19006 1.20948 1.00563 0.94540 0.97455 0.92727 0.92600 0.92513 0.91286 0.91010 0.86721 0.86477 0.86184 0.91447 0.91492 0.92764 0.92721 0.96653 0.97094 0.92797 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.89 37.16 0.37 -0.91 16 2 C -0.08 -0.85 6.06 -27.88 -0.17 -1.02 16 3 C -0.08 -1.05 5.13 -104.62 -0.54 -1.59 16 4 C -0.13 -1.61 9.70 -39.59 -0.38 -1.99 16 5 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 6 C -0.12 -1.76 9.70 -39.58 -0.38 -2.14 16 7 C -0.06 -0.96 5.13 -104.62 -0.54 -1.50 16 8 C -0.09 -1.46 5.35 -27.88 -0.15 -1.61 16 9 C -0.09 -1.93 5.13 -26.74 -0.14 -2.07 16 10 C -0.01 -0.36 4.04 -27.89 -0.11 -0.48 16 11 C -0.52 -15.19 9.66 -34.44 -0.33 -15.53 16 12 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 13 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 14 N -0.91 -28.44 13.96 55.43 0.77 -27.67 16 15 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 18 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 19 C -0.12 -1.67 9.36 -39.58 -0.37 -2.04 16 20 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 24 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 25 H 0.11 1.13 8.06 -52.49 -0.42 0.70 16 26 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 27 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 28 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 29 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 33 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 34 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 35 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 293.22 15.07 4.42 4.42 Total: -1.00 -31.20 293.22 -8.56 -39.76 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -5.84 Total: -3.00 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: -3.24 Total: -30.89 kcal Atomic # 7 Polarization: -28.44 SS G_CDS: 0.77 Total: -27.67 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.20 -8.56 -39.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065077.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.093 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds