Wall clock time and date at job start Sun Mar 29 2020 22:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.50701 * 109.46578 * 119.99326 * 2 1 3 5 5 H 1.08002 * 120.00022 * 120.00506 * 4 2 1 6 6 C 1.37879 * 120.00302 * 300.00004 * 4 2 1 7 7 N 1.31516 * 119.99643 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00038 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47579 * 59.99607 * 8 6 4 10 10 H 1.48496 * 109.47047 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.46945 * 299.99598 * 8 6 4 12 12 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 13 13 C 1.34777 * 119.99525 * 84.99977 * 12 2 1 14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 2 15 15 C 1.50700 * 119.99675 * 179.72583 * 13 12 2 16 16 H 1.09000 * 115.55056 * 325.94110 * 15 13 12 17 17 C 1.53002 * 117.50158 * 111.65860 * 15 13 12 18 18 C 1.52998 * 60.00121 * 107.49017 * 17 15 13 19 19 F 1.39902 * 117.49614 * 252.51322 * 18 17 15 20 20 F 1.39899 * 117.51926 * 107.48550 * 18 17 15 21 21 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 22 22 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 24 24 H 0.96996 * 119.99343 * 179.97438 * 7 6 4 25 25 H 0.97000 * 120.00580 * 265.00723 * 12 2 1 26 26 H 1.08997 * 117.49663 * 214.97926 * 17 15 13 27 27 H 1.09000 * 117.49678 * 359.97438 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1317 6 6 1.6991 -0.2391 2.4828 7 7 0.9435 0.8305 2.6033 8 14 2.3223 -1.1192 4.0081 9 1 3.8073 -1.1188 4.0080 10 1 1.8276 -0.4187 5.2205 11 1 1.8276 -2.5195 4.0084 12 7 2.0185 -0.6908 -1.1960 13 6 2.1472 -0.0185 -2.3570 14 8 1.8591 1.1584 -2.4116 15 6 2.6554 -0.7275 -3.5859 16 1 3.3991 -1.5040 -3.4068 17 6 1.6688 -0.9451 -4.7349 18 6 2.7853 0.0919 -4.8714 19 9 2.4231 1.4421 -4.8161 20 9 3.8494 -0.2127 -5.7270 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8898 24 1 0.7089 1.1617 3.4842 25 1 2.2491 -1.6319 -1.1524 26 1 1.7631 -1.8651 -5.3117 27 1 0.6519 -0.5758 -4.6018 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001616985813.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:07 Heat of formation + Delta-G solvation = -131.429948 kcal Electronic energy + Delta-G solvation = -14795.153725 eV Core-core repulsion = 11802.901672 eV Total energy + Delta-G solvation = -2992.252053 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.081 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.66519 -48.34013 -40.73986 -37.13757 -36.27539 -34.32257 -30.98690 -27.35235 -25.78644 -23.56728 -22.59760 -21.18252 -19.49223 -18.59149 -17.73962 -17.23312 -17.07288 -16.73210 -15.92496 -15.74964 -14.99734 -14.84545 -14.64132 -14.46810 -14.32146 -13.74793 -13.39518 -13.02802 -12.89162 -12.74195 -12.29407 -12.20675 -12.13919 -11.16452 -11.12151 -10.77436 -10.58424 -9.80946 -8.17708 -6.35688 1.36788 1.46521 1.48248 1.56112 1.93061 2.16834 2.37969 2.56286 3.12794 3.26428 3.50433 3.59375 4.02090 4.51241 4.61478 4.75295 4.81359 4.91603 5.08039 5.41578 5.58067 5.67131 5.88265 6.08649 6.71510 6.88214 7.30859 7.48919 8.88484 Molecular weight = 219.08amu Principal moments of inertia in cm(-1) A = 0.059452 B = 0.006498 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.857146 B = 4307.968401 C = 4474.404140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.269 3.731 3 H -0.004 1.004 4 C -0.548 4.548 5 H 0.076 0.924 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.262 1.262 12 N -0.693 5.693 13 C 0.519 3.481 14 O -0.588 6.588 15 C -0.190 4.190 16 H 0.183 0.817 17 C -0.109 4.109 18 C 0.196 3.804 19 F -0.168 7.168 20 F -0.158 7.158 21 H 0.012 0.988 22 H 0.044 0.956 23 H 0.066 0.934 24 H 0.265 0.735 25 H 0.410 0.590 26 H 0.179 0.821 27 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.276 -8.836 -11.828 14.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.165 3.835 3 H 0.014 0.986 4 C -0.586 4.586 5 H 0.095 0.905 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.186 1.186 12 N -0.342 5.342 13 C 0.305 3.695 14 O -0.469 6.469 15 C -0.212 4.212 16 H 0.200 0.800 17 C -0.146 4.146 18 C 0.158 3.842 19 F -0.149 7.149 20 F -0.139 7.139 21 H 0.032 0.968 22 H 0.063 0.937 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.246 0.754 26 H 0.197 0.803 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.005 -7.854 -11.719 14.249 hybrid contribution 0.458 0.037 0.934 1.041 sum 2.464 -7.817 -10.785 13.546 Atomic orbital electron populations 1.21892 0.98013 0.99705 0.99617 1.18397 0.91368 0.91886 0.81830 0.98560 1.21517 1.32748 1.13692 0.90645 0.90545 1.25819 0.94839 0.95556 1.02411 1.70053 1.36965 1.23919 1.24714 0.85369 0.78599 0.78753 0.77438 1.19631 1.21377 1.18640 1.46164 1.64544 1.14365 1.09100 1.20012 0.78056 0.86587 0.84820 1.90733 1.52665 1.17916 1.85590 1.23724 1.06242 1.02867 0.88381 0.79993 1.24471 0.95374 0.99811 0.94968 1.19950 0.91468 0.78198 0.94542 1.93060 1.91257 1.34041 1.96524 1.93022 1.57522 1.92325 1.70994 0.96842 0.93669 0.91577 0.92543 0.75447 0.80349 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.64 9.26 71.98 0.67 -5.97 15 2 C 0.27 13.72 2.56 44.25 0.11 13.84 15 3 H 0.00 -0.22 7.58 -2.39 -0.02 -0.23 15 4 C -0.55 -28.39 8.73 25.60 0.22 -28.17 15 5 H 0.08 3.64 7.74 -2.91 -0.02 3.61 15 6 C 0.01 0.73 5.30 84.65 0.45 1.18 15 7 N -0.92 -52.40 11.32 21.45 0.24 -52.15 15 8 Si 0.97 41.27 29.54 68.60 2.03 43.30 15 9 H -0.27 -11.21 7.11 99.48 0.71 -10.50 15 10 H -0.29 -12.23 7.11 99.48 0.71 -11.52 15 11 H -0.26 -10.45 7.11 99.48 0.71 -9.74 15 12 N -0.69 -27.47 5.07 -446.08 -2.26 -29.73 15 13 C 0.52 20.08 7.58 87.66 0.66 20.74 15 14 O -0.59 -29.08 14.81 -3.04 -0.04 -29.12 15 15 C -0.19 -4.79 6.17 -11.54 -0.07 -4.86 15 16 H 0.18 3.12 8.14 -2.39 -0.02 3.10 15 17 C -0.11 -1.99 10.20 30.59 0.31 -1.68 15 18 C 0.20 5.30 5.19 30.59 0.16 5.46 15 19 F -0.17 -6.14 15.71 44.97 0.71 -5.43 15 20 F -0.16 -3.98 17.60 44.97 0.79 -3.19 15 21 H 0.01 0.62 8.14 -2.39 -0.02 0.60 15 22 H 0.04 2.03 8.14 -2.39 -0.02 2.01 15 23 H 0.07 3.63 6.07 -2.39 -0.01 3.62 15 24 H 0.27 14.38 8.31 -92.71 -0.77 13.61 15 25 H 0.41 12.99 8.54 -92.71 -0.79 12.20 15 26 H 0.18 1.55 8.14 -2.39 -0.02 1.53 15 27 H 0.12 2.44 8.14 -2.39 -0.02 2.42 15 Total: -1.00 -69.48 249.31 4.38 -65.09 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.41 Total: 10.69 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 2.52 Total: 0.54 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -2.02 Total: -81.89 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.04 Total: -29.12 kcal Atomic # 9 Polarization: -10.12 SS G_CDS: 1.50 Total: -8.62 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -69.48 4.38 -65.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001616985813.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.336 kcal (2) G-P(sol) polarization free energy of solvation -69.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds