Wall clock time and date at job start Sun Mar 29 2020 22:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35904 * 117.00216 * 2 1 4 4 C 1.38751 * 120.05412 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94641 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.97641 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47185 * 270.02660 * 6 5 4 8 8 C 1.50696 * 109.47185 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00109 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00279 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99524 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00424 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46825 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47424 * 119.99734 * 12 10 8 15 15 H 1.48503 * 109.46769 * 239.99954 * 12 10 8 16 16 C 1.38291 * 120.05218 * 0.02562 * 5 4 3 17 17 C 1.38241 * 120.11180 * 0.25948 * 16 5 4 18 18 C 1.38173 * 120.05599 * 359.44059 * 17 16 5 19 19 C 1.50697 * 120.02781 * 180.25768 * 18 17 16 20 20 H 1.09007 * 109.47002 * 59.99909 * 1 2 3 21 21 H 1.09004 * 109.47516 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47587 * 299.99927 * 1 2 3 23 23 H 1.08007 * 120.02525 * 0.04297 * 4 3 2 24 24 H 1.09003 * 109.47221 * 30.01967 * 6 5 4 25 25 H 1.08992 * 109.47693 * 150.01967 * 6 5 4 26 26 H 1.09003 * 109.46475 * 299.99763 * 7 6 5 27 27 H 1.08993 * 109.47508 * 59.99644 * 7 6 5 28 28 H 0.97001 * 119.99658 * 180.02562 * 11 10 8 29 29 H 1.08002 * 119.93997 * 179.97438 * 16 5 4 30 30 H 1.08001 * 119.97222 * 179.70461 * 17 16 5 31 31 H 1.08994 * 109.46977 * 270.32127 * 19 18 17 32 32 H 1.09001 * 109.47211 * 30.31825 * 19 18 17 33 33 H 1.08997 * 109.46993 * 150.31913 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 1.1020 4.8698 0.0012 7 6 0.8226 5.2979 -1.4409 8 6 0.0043 6.5633 -1.4398 9 1 -0.2877 7.0167 -0.5041 10 6 -0.3717 7.1423 -2.6333 11 7 -0.0156 6.5904 -3.7727 12 14 -1.3866 8.7105 -2.6319 13 1 -1.6545 9.1254 -1.2314 14 1 -0.6385 9.7850 -3.3325 15 1 -2.6742 8.4673 -3.3306 16 6 3.3019 3.6757 -0.0016 17 6 4.0559 2.5171 -0.0081 18 6 3.4311 1.2847 -0.0013 19 6 4.2537 0.0221 -0.0025 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.2127 2.3203 0.0017 24 1 0.1582 4.6913 0.5164 25 1 1.6523 5.6585 0.5141 26 1 1.7664 5.4764 -1.9562 27 1 0.2722 4.5093 -1.9539 28 1 -0.2798 6.9980 -4.6124 29 1 3.7922 4.6381 -0.0024 30 1 5.1344 2.5752 -0.0142 31 1 4.4511 -0.2819 -1.0304 32 1 5.1982 0.2033 0.5105 33 1 3.7068 -0.7683 0.5115 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059698894.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:28 Heat of formation + Delta-G solvation = -39.102564 kcal Electronic energy + Delta-G solvation = -14342.240651 eV Core-core repulsion = 11946.336177 eV Total energy + Delta-G solvation = -2395.904475 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.95190 -37.36323 -34.35627 -32.62026 -30.23699 -29.77804 -27.42791 -26.63952 -24.08829 -21.87825 -21.44310 -20.10754 -17.14868 -16.29766 -15.94441 -15.56946 -15.15278 -14.47922 -13.99113 -13.66812 -13.36314 -12.78219 -12.68754 -12.29149 -11.98322 -11.87463 -11.73891 -11.26919 -11.03236 -10.93000 -10.89278 -10.49688 -10.36182 -9.84524 -9.53984 -9.09057 -8.37097 -8.24608 -7.65965 -6.00828 -4.04097 1.73351 1.84333 3.30165 3.37631 3.41713 3.49053 4.13716 4.45320 5.09088 5.11607 5.24998 5.30133 5.34720 5.50148 5.53947 5.55300 5.71647 5.81765 5.94237 5.95447 6.10784 6.32407 6.46890 6.65249 6.72790 6.83023 6.97979 7.14251 7.20238 7.67089 7.68437 7.81223 7.99176 8.39418 9.03237 9.60063 11.10252 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.040537 B = 0.005974 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.560571 B = 4685.690058 C = 5024.645847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.122 3.878 4 C -0.203 4.203 5 C -0.023 4.023 6 C -0.081 4.081 7 C 0.030 3.970 8 C -0.522 4.522 9 H 0.056 0.944 10 C 0.057 3.943 11 N -0.894 5.894 12 Si 0.892 3.108 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.153 4.153 17 C -0.084 4.084 18 C -0.140 4.140 19 C -0.097 4.097 20 H 0.057 0.943 21 H 0.095 0.905 22 H 0.053 0.947 23 H 0.126 0.874 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.019 0.981 27 H 0.016 0.984 28 H 0.260 0.740 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.568 -11.429 7.795 14.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.078 3.922 4 C -0.222 4.222 5 C -0.023 4.023 6 C -0.118 4.118 7 C -0.007 4.007 8 C -0.560 4.560 9 H 0.075 0.925 10 C -0.144 4.144 11 N -0.534 5.534 12 Si 0.720 3.280 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.172 4.172 17 C -0.102 4.102 18 C -0.141 4.141 19 C -0.154 4.154 20 H 0.076 0.924 21 H 0.113 0.887 22 H 0.072 0.928 23 H 0.143 0.857 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.037 0.963 27 H 0.035 0.965 28 H 0.070 0.930 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.630 -11.605 7.609 14.629 hybrid contribution -0.891 1.080 -0.240 1.421 sum 3.739 -10.525 7.369 13.381 Atomic orbital electron populations 1.23014 0.78756 1.03299 1.01724 1.85983 1.21063 1.27265 1.89107 1.18787 0.91715 0.83937 0.97776 1.21131 0.99933 0.91775 1.09365 1.20157 0.94038 0.95333 0.92778 1.20863 0.97304 0.91840 1.01833 1.19070 0.96979 0.96007 0.88641 1.21293 1.33266 1.09065 0.92378 0.92527 1.25033 0.96243 0.97530 0.95642 1.69990 1.46216 1.39885 0.97261 0.86534 0.79998 0.83378 0.78090 1.19704 1.20973 1.21018 1.20988 0.93530 0.98242 1.04398 1.20788 0.99273 0.91187 0.98959 1.19083 0.90500 0.95913 1.08578 1.20510 0.98381 0.94776 1.01738 0.92427 0.88703 0.92799 0.85655 0.92327 0.91998 0.96311 0.96525 0.93025 0.86011 0.85967 0.91968 0.92221 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -4.82 9.54 -19.44 -0.19 -5.00 16 3 C 0.12 2.05 6.66 -39.22 -0.26 1.79 16 4 C -0.20 -3.64 8.69 -39.43 -0.34 -3.99 16 5 C -0.02 -0.44 5.13 -104.65 -0.54 -0.98 16 6 C -0.08 -1.72 5.28 -27.88 -0.15 -1.87 16 7 C 0.03 0.79 4.95 -27.88 -0.14 0.65 16 8 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 9 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 12 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 C -0.15 -2.68 9.70 -39.56 -0.38 -3.06 16 17 C -0.08 -1.30 9.70 -39.60 -0.38 -1.68 16 18 C -0.14 -2.19 5.89 -104.47 -0.62 -2.81 16 19 C -0.10 -1.21 9.79 36.00 0.35 -0.86 16 20 H 0.06 0.70 7.66 -51.92 -0.40 0.30 16 21 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 23 H 0.13 2.11 6.30 -52.48 -0.33 1.78 16 24 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 25 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 30 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 33 H 0.06 0.79 7.53 -51.93 -0.39 0.40 16 LS Contribution 282.01 15.07 4.25 4.25 Total: -1.00 -31.30 282.01 -6.95 -38.25 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -4.86 Total: -2.64 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: -1.88 Total: -25.08 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 0.74 Total: -26.41 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.19 Total: -5.00 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.30 -6.95 -38.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059698894.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.854 kcal (2) G-P(sol) polarization free energy of solvation -31.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds