Wall clock time and date at job start Sun Mar 29 2020 22:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35904 * 117.00216 * 2 1 4 4 C 1.38751 * 120.05412 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94641 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.97641 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47185 * 270.02660 * 6 5 4 8 8 C 1.50696 * 109.47185 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00109 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00279 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99524 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00424 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46825 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47424 * 119.99734 * 12 10 8 15 15 H 1.48503 * 109.46769 * 239.99954 * 12 10 8 16 16 C 1.38291 * 120.05218 * 0.02562 * 5 4 3 17 17 C 1.38241 * 120.11180 * 0.25948 * 16 5 4 18 18 C 1.38173 * 120.05599 * 359.44059 * 17 16 5 19 19 C 1.50697 * 120.02781 * 180.25768 * 18 17 16 20 20 H 1.09007 * 109.47002 * 59.99909 * 1 2 3 21 21 H 1.09004 * 109.47516 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47587 * 299.99927 * 1 2 3 23 23 H 1.08007 * 120.02525 * 0.04297 * 4 3 2 24 24 H 1.09003 * 109.47221 * 30.01967 * 6 5 4 25 25 H 1.08992 * 109.47693 * 150.01967 * 6 5 4 26 26 H 1.09003 * 109.46475 * 299.99763 * 7 6 5 27 27 H 1.08993 * 109.47508 * 59.99644 * 7 6 5 28 28 H 0.97001 * 119.99658 * 180.02562 * 11 10 8 29 29 H 1.08002 * 119.93997 * 179.97438 * 16 5 4 30 30 H 1.08001 * 119.97222 * 179.70461 * 17 16 5 31 31 H 1.08994 * 109.46977 * 270.32127 * 19 18 17 32 32 H 1.09001 * 109.47211 * 30.31825 * 19 18 17 33 33 H 1.08997 * 109.46993 * 150.31913 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 1.1020 4.8698 0.0012 7 6 0.8226 5.2979 -1.4409 8 6 0.0043 6.5633 -1.4398 9 1 -0.2877 7.0167 -0.5041 10 6 -0.3717 7.1423 -2.6333 11 7 -0.0156 6.5904 -3.7727 12 14 -1.3866 8.7105 -2.6319 13 1 -1.6545 9.1254 -1.2314 14 1 -0.6385 9.7850 -3.3325 15 1 -2.6742 8.4673 -3.3306 16 6 3.3019 3.6757 -0.0016 17 6 4.0559 2.5171 -0.0081 18 6 3.4311 1.2847 -0.0013 19 6 4.2537 0.0221 -0.0025 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.2127 2.3203 0.0017 24 1 0.1582 4.6913 0.5164 25 1 1.6523 5.6585 0.5141 26 1 1.7664 5.4764 -1.9562 27 1 0.2722 4.5093 -1.9539 28 1 -0.2798 6.9980 -4.6124 29 1 3.7922 4.6381 -0.0024 30 1 5.1344 2.5752 -0.0142 31 1 4.4511 -0.2819 -1.0304 32 1 5.1982 0.2033 0.5105 33 1 3.7068 -0.7683 0.5115 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059698894.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:28 Heat of formation + Delta-G solvation = -56.676777 kcal Electronic energy + Delta-G solvation = -14343.002726 eV Core-core repulsion = 11946.336177 eV Total energy + Delta-G solvation = -2396.666550 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.18854 -38.61991 -36.08144 -34.44658 -31.92447 -31.04936 -28.53080 -28.21338 -25.78968 -23.17722 -23.11901 -21.59527 -18.72532 -18.13916 -17.25103 -16.69512 -16.52443 -16.40755 -15.26614 -15.06761 -14.58423 -14.33800 -14.29533 -13.94503 -13.38153 -13.15039 -12.95105 -12.83582 -12.73272 -12.50266 -12.22599 -12.08460 -11.75063 -11.74142 -11.44591 -11.12315 -10.58757 -9.59645 -8.96318 -8.21541 -6.34207 0.41384 0.52830 1.39714 1.40045 1.53800 2.39006 2.40186 2.81870 3.11237 3.84323 3.90483 4.16463 4.27717 4.35736 4.36930 4.42589 4.67448 4.69578 4.75275 4.81995 4.83038 4.89279 4.93284 5.13625 5.37409 5.39558 5.47472 5.55053 5.58387 5.81140 5.85328 5.92972 6.20148 6.45929 6.82789 7.35574 8.90347 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.040537 B = 0.005974 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.560571 B = 4685.690058 C = 5024.645847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.325 6.325 3 C 0.114 3.886 4 C -0.216 4.216 5 C -0.052 4.052 6 C -0.066 4.066 7 C 0.038 3.962 8 C -0.543 4.543 9 H 0.064 0.936 10 C -0.001 4.001 11 N -0.935 5.935 12 Si 0.968 3.032 13 H -0.260 1.260 14 H -0.277 1.277 15 H -0.278 1.278 16 C -0.166 4.166 17 C -0.080 4.080 18 C -0.143 4.143 19 C -0.095 4.095 20 H 0.048 0.952 21 H 0.128 0.872 22 H 0.059 0.941 23 H 0.126 0.874 24 H 0.061 0.939 25 H 0.067 0.933 26 H -0.010 1.010 27 H -0.013 1.013 28 H 0.264 0.736 29 H 0.127 0.873 30 H 0.157 0.843 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.977 -11.842 8.670 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.238 6.238 3 C 0.069 3.931 4 C -0.235 4.235 5 C -0.052 4.052 6 C -0.103 4.103 7 C 0.001 3.999 8 C -0.581 4.581 9 H 0.082 0.918 10 C -0.199 4.199 11 N -0.575 5.575 12 Si 0.793 3.207 13 H -0.184 1.184 14 H -0.203 1.203 15 H -0.204 1.204 16 C -0.184 4.184 17 C -0.098 4.098 18 C -0.143 4.143 19 C -0.151 4.151 20 H 0.066 0.934 21 H 0.146 0.854 22 H 0.078 0.922 23 H 0.144 0.856 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.009 0.991 27 H 0.005 0.995 28 H 0.073 0.927 29 H 0.145 0.855 30 H 0.175 0.825 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.037 -12.028 8.501 15.566 hybrid contribution -0.999 1.100 -0.520 1.574 sum 4.038 -10.927 7.980 14.121 Atomic orbital electron populations 1.23275 0.77150 1.05459 1.01563 1.85980 1.22719 1.26297 1.88838 1.18985 0.92479 0.84065 0.97600 1.21208 1.00275 0.92088 1.09907 1.20044 0.94822 0.94700 0.95637 1.20581 0.98111 0.93356 0.98294 1.18896 0.94810 0.94725 0.91473 1.21726 1.33610 1.09899 0.92896 0.91827 1.26025 0.97416 1.01329 0.95107 1.70128 1.47516 1.41790 0.98067 0.85349 0.78111 0.78574 0.78710 1.18378 1.20289 1.20352 1.21169 0.93050 0.99535 1.04635 1.21151 1.00894 0.90262 0.97462 1.19603 0.90517 0.97451 1.06745 1.20570 0.98909 0.93032 1.02592 0.93368 0.85395 0.92213 0.85619 0.92019 0.91434 0.99120 0.99498 0.92732 0.85541 0.82540 0.91209 0.89766 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.56 16 2 O -0.32 -9.35 9.54 -92.47 -0.88 -10.23 16 3 C 0.11 3.72 6.66 22.50 0.15 3.87 16 4 C -0.22 -7.84 8.69 22.36 0.19 -7.65 16 5 C -0.05 -2.03 5.13 -19.88 -0.10 -2.13 16 6 C -0.07 -2.88 5.28 29.85 0.16 -2.72 16 7 C 0.04 2.08 4.95 29.85 0.15 2.23 16 8 C -0.54 -31.45 9.11 25.60 0.23 -31.21 16 9 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 10 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 11 N -0.93 -57.97 13.29 21.45 0.28 -57.69 16 12 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 13 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 14 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 16 C -0.17 -5.73 9.70 22.28 0.22 -5.52 16 17 C -0.08 -2.31 9.70 22.25 0.22 -2.10 16 18 C -0.14 -4.19 5.89 -19.77 -0.12 -4.30 16 19 C -0.09 -2.06 9.79 71.23 0.70 -1.37 16 20 H 0.05 1.16 7.66 -2.38 -0.02 1.14 16 21 H 0.13 1.96 8.14 -2.38 -0.02 1.94 16 22 H 0.06 1.26 7.66 -2.39 -0.02 1.24 16 23 H 0.13 4.37 6.30 -2.91 -0.02 4.35 16 24 H 0.06 2.58 8.08 -2.39 -0.02 2.56 16 25 H 0.07 2.80 8.08 -2.39 -0.02 2.78 16 26 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 27 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 28 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 29 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 30 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.43 8.09 -2.39 -0.02 1.41 16 33 H 0.07 1.44 7.53 -2.39 -0.02 1.42 16 Total: -1.00 -67.92 282.01 5.87 -62.05 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.07 Total: 8.24 kcal Atomic # 6 Polarization: -52.30 SS G_CDS: 3.37 Total: -48.93 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.28 Total: -57.69 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -0.88 Total: -10.23 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -67.92 5.87 -62.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059698894.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.375 kcal (2) G-P(sol) polarization free energy of solvation -67.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds