Wall clock time and date at job start Sun Mar 29 2020 22:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99686 * 2 1 4 4 H 1.48496 * 109.47269 * 89.99827 * 3 2 1 5 5 H 1.48507 * 109.47135 * 209.99652 * 3 2 1 6 6 H 1.48503 * 109.47464 * 329.99399 * 3 2 1 7 7 C 1.37874 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00141 * 189.37201 * 7 2 1 9 9 C 1.50695 * 119.99807 * 9.37472 * 7 2 1 10 10 C 1.52998 * 115.55159 * 39.81086 * 9 7 2 11 11 N 1.46497 * 109.47377 * 174.43300 * 10 9 7 12 12 C 1.35871 * 119.93424 * 272.07134 * 11 10 9 13 13 C 1.36027 * 119.18564 * 179.73168 * 12 11 10 14 14 C 1.39806 * 119.08467 * 0.55832 * 13 12 11 15 15 N 1.31763 * 119.82982 * 359.71157 * 14 13 12 16 16 C 1.33514 * 120.81303 * 359.97438 * 15 14 13 17 17 O 1.21962 * 119.52045 * 180.02562 * 16 15 14 18 18 C 1.52995 * 117.50056 * 254.10147 * 9 7 2 19 19 C 1.52992 * 60.00212 * 252.50901 * 18 9 7 20 20 H 0.96997 * 120.00155 * 354.99211 * 1 2 3 21 21 H 1.09002 * 109.47279 * 294.43025 * 10 9 7 22 22 H 1.09001 * 109.47395 * 54.43145 * 10 9 7 23 23 H 1.07996 * 120.40561 * 0.02562 * 12 11 10 24 24 H 1.08002 * 120.45714 * 180.24455 * 13 12 11 25 25 H 1.08001 * 120.08548 * 179.68128 * 14 13 12 26 26 H 1.09002 * 117.50260 * 0.02562 * 18 9 7 27 27 H 1.09009 * 117.50035 * 145.02129 * 18 9 7 28 28 H 1.09001 * 117.50117 * 252.50762 * 19 18 9 29 29 H 1.09002 * 117.50083 * 107.48616 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4000 5 1 3.5467 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0738 -1.2001 0.1528 9 6 1.2662 -2.4904 -0.2115 10 6 0.1554 -2.4529 -1.2629 11 7 -0.3802 -3.8028 -1.4558 12 6 0.1934 -4.6367 -2.3621 13 6 -0.3129 -5.8887 -2.5250 14 6 -1.4180 -6.2793 -1.7630 15 7 -1.9484 -5.4381 -0.8985 16 6 -1.4431 -4.2127 -0.7385 17 8 -1.9523 -3.4533 0.0687 18 6 1.0558 -3.3911 1.0073 19 6 2.0639 -3.7886 -0.0727 20 1 -0.4850 0.8368 0.0733 21 1 -0.6418 -1.7905 -0.9257 22 1 0.5597 -2.0843 -2.2057 23 1 1.0439 -4.3113 -2.9427 24 1 0.1296 -6.5699 -3.2368 25 1 -1.8363 -7.2678 -1.8829 26 1 1.4510 -3.0457 1.9626 27 1 0.1256 -3.9570 1.0603 28 1 1.7971 -4.6161 -0.7301 29 1 3.1228 -3.7049 0.1720 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862385.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:38 Heat of formation + Delta-G solvation = 46.604292 kcal Electronic energy + Delta-G solvation = -15087.249204 eV Core-core repulsion = 12591.520914 eV Total energy + Delta-G solvation = -2495.728290 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.25794 -36.99412 -36.43871 -34.13107 -32.27351 -30.58354 -27.21701 -25.64288 -24.20567 -22.79867 -21.17112 -19.37247 -17.79657 -16.90114 -16.70448 -15.96994 -15.48864 -14.70382 -14.19565 -13.70066 -13.45352 -12.80642 -12.55298 -12.07026 -11.78121 -11.58365 -11.07004 -10.95287 -10.72645 -10.53494 -10.30941 -10.21411 -9.53777 -9.32258 -8.98908 -8.89653 -8.19009 -7.90649 -6.18346 -4.25542 1.06390 2.08318 3.12944 3.21402 3.28255 3.30287 4.25265 4.34347 4.67553 4.74043 4.86070 5.15328 5.34447 5.40247 5.79782 5.89985 6.05395 6.15332 6.22967 6.47308 6.60500 6.66839 6.81971 7.02931 7.11446 7.27565 7.43974 7.79030 8.19192 8.37015 8.70404 8.76257 9.35707 10.84498 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.046750 B = 0.009150 C = 0.008698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.781556 B = 3059.339236 C = 3218.229483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.068 3.932 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.271 1.271 6 H -0.283 1.283 7 C -0.495 4.495 8 H 0.067 0.933 9 C 0.047 3.953 10 C 0.117 3.883 11 N -0.498 5.498 12 C 0.198 3.802 13 C -0.326 4.326 14 C 0.235 3.765 15 N -0.561 5.561 16 C 0.618 3.382 17 O -0.514 6.514 18 C -0.193 4.193 19 C -0.218 4.218 20 H 0.268 0.732 21 H 0.149 0.851 22 H 0.077 0.923 23 H 0.167 0.833 24 H 0.149 0.851 25 H 0.164 0.836 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.992 -8.934 -7.876 12.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.136 4.136 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.196 1.196 6 H -0.209 1.209 7 C -0.533 4.533 8 H 0.085 0.915 9 C 0.046 3.954 10 C -0.003 4.003 11 N -0.209 5.209 12 C 0.056 3.944 13 C -0.353 4.353 14 C 0.053 3.947 15 N -0.295 5.295 16 C 0.320 3.680 17 O -0.387 6.387 18 C -0.231 4.231 19 C -0.255 4.255 20 H 0.078 0.922 21 H 0.166 0.834 22 H 0.095 0.905 23 H 0.184 0.816 24 H 0.166 0.834 25 H 0.181 0.819 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.732 -8.102 -6.689 10.532 hybrid contribution 1.292 0.816 -0.456 1.595 sum 2.025 -7.286 -7.145 10.404 Atomic orbital electron populations 1.69790 1.05917 1.27469 1.47807 1.25084 0.94930 0.99513 0.94058 0.86448 0.79761 0.82645 0.78435 1.20445 1.19616 1.20885 1.20430 0.93784 0.88343 1.50742 0.91472 1.19189 0.93312 0.89778 0.93106 1.22323 1.00741 0.77753 0.99496 1.47105 1.26343 1.17030 1.30420 1.22666 0.94025 0.89940 0.87765 1.21401 1.05051 0.97893 1.10930 1.23470 0.88316 0.97771 0.85177 1.69871 1.32602 1.03545 1.23452 1.18135 0.79982 0.86663 0.83191 1.91059 1.59707 1.52956 1.34998 1.22981 0.98316 1.06507 0.95321 1.23043 0.97064 1.00629 1.04750 0.92172 0.83392 0.90512 0.81589 0.83374 0.81927 0.90275 0.91358 0.91824 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.28 10.93 55.43 0.61 -23.67 15 2 C 0.07 1.80 5.26 -17.82 -0.09 1.71 15 3 Si 0.90 20.22 29.55 -169.99 -5.02 15.20 15 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 7 C -0.50 -13.02 9.02 -34.44 -0.31 -13.33 15 8 H 0.07 1.74 7.83 -52.49 -0.41 1.33 15 9 C 0.05 1.15 2.31 -155.67 -0.36 0.79 15 10 C 0.12 2.67 4.88 -4.04 -0.02 2.65 15 11 N -0.50 -9.89 1.91 -121.73 -0.23 -10.12 15 12 C 0.20 2.86 8.11 -16.56 -0.13 2.72 15 13 C -0.33 -3.84 10.07 -39.79 -0.40 -4.24 15 14 C 0.24 3.19 11.30 -16.99 -0.19 2.99 15 15 N -0.56 -10.97 10.48 -16.60 -0.17 -11.15 15 16 C 0.62 14.07 6.77 -88.18 -0.60 13.48 15 17 O -0.51 -14.20 15.87 4.95 0.08 -14.12 15 18 C -0.19 -4.75 9.60 -26.74 -0.26 -5.00 15 19 C -0.22 -4.61 9.52 -26.74 -0.25 -4.86 15 20 H 0.27 7.12 8.32 -40.82 -0.34 6.78 15 21 H 0.15 3.99 5.25 -51.93 -0.27 3.72 15 22 H 0.08 1.59 8.05 -51.93 -0.42 1.17 15 23 H 0.17 1.84 8.06 -52.49 -0.42 1.42 15 24 H 0.15 1.13 8.06 -52.49 -0.42 0.71 15 25 H 0.16 1.44 8.06 -52.49 -0.42 1.02 15 26 H 0.08 1.98 8.14 -51.93 -0.42 1.56 15 27 H 0.07 1.77 5.54 -51.92 -0.29 1.48 15 28 H 0.06 1.19 5.62 -51.93 -0.29 0.90 15 29 H 0.08 1.63 8.14 -51.93 -0.42 1.21 15 LS Contribution 247.97 15.07 3.74 3.74 Total: -1.00 -32.75 247.97 -6.56 -39.30 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -2.93 Total: 3.91 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -2.62 Total: -3.09 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.20 Total: -44.94 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.08 Total: -14.12 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -32.75 -6.56 -39.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862385.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.907 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds