Wall clock time and date at job start Sun Mar 29 2020 22:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99686 * 2 1 4 4 H 1.48496 * 109.47269 * 89.99827 * 3 2 1 5 5 H 1.48507 * 109.47135 * 209.99652 * 3 2 1 6 6 H 1.48503 * 109.47464 * 329.99399 * 3 2 1 7 7 C 1.37874 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00141 * 189.37201 * 7 2 1 9 9 C 1.50695 * 119.99807 * 9.37472 * 7 2 1 10 10 C 1.52998 * 115.55159 * 39.81086 * 9 7 2 11 11 N 1.46497 * 109.47377 * 174.43300 * 10 9 7 12 12 C 1.35871 * 119.93424 * 272.07134 * 11 10 9 13 13 C 1.36027 * 119.18564 * 179.73168 * 12 11 10 14 14 C 1.39806 * 119.08467 * 0.55832 * 13 12 11 15 15 N 1.31763 * 119.82982 * 359.71157 * 14 13 12 16 16 C 1.33514 * 120.81303 * 359.97438 * 15 14 13 17 17 O 1.21962 * 119.52045 * 180.02562 * 16 15 14 18 18 C 1.52995 * 117.50056 * 254.10147 * 9 7 2 19 19 C 1.52992 * 60.00212 * 252.50901 * 18 9 7 20 20 H 0.96997 * 120.00155 * 354.99211 * 1 2 3 21 21 H 1.09002 * 109.47279 * 294.43025 * 10 9 7 22 22 H 1.09001 * 109.47395 * 54.43145 * 10 9 7 23 23 H 1.07996 * 120.40561 * 0.02562 * 12 11 10 24 24 H 1.08002 * 120.45714 * 180.24455 * 13 12 11 25 25 H 1.08001 * 120.08548 * 179.68128 * 14 13 12 26 26 H 1.09002 * 117.50260 * 0.02562 * 18 9 7 27 27 H 1.09009 * 117.50035 * 145.02129 * 18 9 7 28 28 H 1.09001 * 117.50117 * 252.50762 * 19 18 9 29 29 H 1.09002 * 117.50083 * 107.48616 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4000 5 1 3.5467 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0738 -1.2001 0.1528 9 6 1.2662 -2.4904 -0.2115 10 6 0.1554 -2.4529 -1.2629 11 7 -0.3802 -3.8028 -1.4558 12 6 0.1934 -4.6367 -2.3621 13 6 -0.3129 -5.8887 -2.5250 14 6 -1.4180 -6.2793 -1.7630 15 7 -1.9484 -5.4381 -0.8985 16 6 -1.4431 -4.2127 -0.7385 17 8 -1.9523 -3.4533 0.0687 18 6 1.0558 -3.3911 1.0073 19 6 2.0639 -3.7886 -0.0727 20 1 -0.4850 0.8368 0.0733 21 1 -0.6418 -1.7905 -0.9257 22 1 0.5597 -2.0843 -2.2057 23 1 1.0439 -4.3113 -2.9427 24 1 0.1296 -6.5699 -3.2368 25 1 -1.8363 -7.2678 -1.8829 26 1 1.4510 -3.0457 1.9626 27 1 0.1256 -3.9570 1.0603 28 1 1.7971 -4.6161 -0.7301 29 1 3.1228 -3.7049 0.1720 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862385.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:38 Heat of formation + Delta-G solvation = 22.955246 kcal Electronic energy + Delta-G solvation = -15088.274704 eV Core-core repulsion = 12591.520914 eV Total energy + Delta-G solvation = -2496.753789 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.70354 -38.69689 -38.03394 -35.64469 -34.25755 -31.90070 -28.87872 -27.54418 -25.55879 -24.23243 -22.98553 -21.19252 -19.18655 -18.64656 -18.14908 -17.40363 -17.19498 -16.49852 -15.57387 -15.44978 -14.75238 -14.41214 -14.15423 -13.77151 -13.39187 -13.15395 -12.88087 -12.73169 -12.44994 -12.22265 -12.06934 -11.83253 -11.31211 -11.18847 -10.77391 -10.45137 -10.09992 -9.34422 -8.15638 -6.31758 -0.12803 0.84328 1.41358 1.43947 1.55107 1.68710 2.37921 2.90208 2.96065 3.44643 3.50352 3.75152 3.98829 4.09550 4.21680 4.43585 4.50932 4.67421 4.74592 4.83639 4.95420 5.07584 5.17515 5.36660 5.40462 5.59684 5.68791 5.87023 6.23631 6.70705 6.97191 7.27624 7.33876 8.85026 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.046750 B = 0.009150 C = 0.008698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.781556 B = 3059.339236 C = 3218.229483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.021 3.979 3 Si 0.966 3.034 4 H -0.282 1.282 5 H -0.256 1.256 6 H -0.282 1.282 7 C -0.512 4.512 8 H 0.068 0.932 9 C 0.024 3.976 10 C 0.132 3.868 11 N -0.505 5.505 12 C 0.172 3.828 13 C -0.285 4.285 14 C 0.240 3.760 15 N -0.604 5.604 16 C 0.608 3.392 17 O -0.594 6.594 18 C -0.217 4.217 19 C -0.173 4.173 20 H 0.264 0.736 21 H 0.100 0.900 22 H 0.093 0.907 23 H 0.206 0.794 24 H 0.210 0.790 25 H 0.217 0.783 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.095 0.905 29 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.057 -11.219 -10.477 15.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.790 3.210 4 H -0.209 1.209 5 H -0.180 1.180 6 H -0.208 1.208 7 C -0.550 4.550 8 H 0.087 0.913 9 C 0.023 3.977 10 C 0.010 3.990 11 N -0.216 5.216 12 C 0.034 3.966 13 C -0.309 4.309 14 C 0.062 3.938 15 N -0.340 5.340 16 C 0.311 3.689 17 O -0.473 6.473 18 C -0.255 4.255 19 C -0.210 4.210 20 H 0.074 0.926 21 H 0.118 0.882 22 H 0.112 0.888 23 H 0.222 0.778 24 H 0.227 0.773 25 H 0.234 0.766 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.113 0.887 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.853 -10.474 -9.366 14.337 hybrid contribution 0.650 1.301 0.259 1.477 sum 3.503 -9.173 -9.107 13.392 Atomic orbital electron populations 1.70027 1.07526 1.27855 1.49020 1.25883 0.95501 1.02881 0.93690 0.85432 0.78958 0.78458 0.78104 1.20854 1.17995 1.20798 1.20771 0.94005 0.89591 1.50612 0.91343 1.19318 0.94694 0.90380 0.93303 1.21759 0.98644 0.79115 0.99504 1.46749 1.26316 1.16674 1.31829 1.23535 0.95486 0.90388 0.87233 1.22121 1.02551 0.97028 1.09211 1.24509 0.87992 0.98577 0.82676 1.69857 1.34310 1.03115 1.26694 1.18456 0.80306 0.87261 0.82836 1.90981 1.62392 1.55250 1.38717 1.22829 0.99062 1.08148 0.95435 1.23044 0.96584 0.99420 1.01931 0.92645 0.88174 0.88837 0.77763 0.77328 0.76618 0.92099 0.93263 0.88714 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.75 10.93 21.45 0.23 -52.52 15 2 C 0.02 1.15 5.26 84.65 0.45 1.59 15 3 Si 0.97 42.00 29.55 68.60 2.03 44.03 15 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 5 H -0.26 -10.40 7.11 99.48 0.71 -9.70 15 6 H -0.28 -12.12 7.11 99.48 0.71 -11.42 15 7 C -0.51 -27.16 9.02 25.60 0.23 -26.93 15 8 H 0.07 3.51 7.83 -2.91 -0.02 3.48 15 9 C 0.02 1.18 2.31 -52.93 -0.12 1.06 15 10 C 0.13 6.13 4.88 86.38 0.42 6.55 15 11 N -0.50 -19.77 1.91 -657.25 -1.26 -21.02 15 12 C 0.17 4.23 8.11 83.55 0.68 4.91 15 13 C -0.28 -4.93 10.07 22.13 0.22 -4.70 15 14 C 0.24 5.45 11.30 85.08 0.96 6.41 15 15 N -0.60 -23.17 10.48 -325.24 -3.41 -26.58 15 16 C 0.61 28.48 6.77 179.50 1.22 29.69 15 17 O -0.59 -35.35 15.87 -5.19 -0.08 -35.43 15 18 C -0.22 -10.96 9.60 30.59 0.29 -10.66 15 19 C -0.17 -6.99 9.52 30.59 0.29 -6.70 15 20 H 0.26 14.76 8.32 -92.71 -0.77 13.99 15 21 H 0.10 5.75 5.25 -2.39 -0.01 5.74 15 22 H 0.09 3.87 8.05 -2.39 -0.02 3.85 15 23 H 0.21 3.36 8.06 -2.91 -0.02 3.34 15 24 H 0.21 1.23 8.06 -2.91 -0.02 1.20 15 25 H 0.22 2.45 8.06 -2.91 -0.02 2.43 15 26 H 0.06 3.20 8.14 -2.39 -0.02 3.18 15 27 H 0.05 2.68 5.54 -2.38 -0.01 2.66 15 28 H 0.09 3.19 5.62 -2.39 -0.01 3.17 15 29 H 0.09 3.49 8.14 -2.39 -0.02 3.47 15 Total: -1.00 -79.87 247.97 3.31 -76.56 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 1.16 Total: 13.74 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 4.64 Total: 1.22 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -4.43 Total: -100.12 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.08 Total: -35.43 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -79.87 3.31 -76.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862385.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.516 kcal (2) G-P(sol) polarization free energy of solvation -79.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds