Wall clock time and date at job start Sun Mar 29 2020 22:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38170 * 120.02918 * 2 1 4 4 C 1.38243 * 120.05667 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.94378 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.46946 * 90.00466 * 5 4 3 7 7 C 1.52997 * 109.46947 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.47238 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99515 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00176 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99883 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00043 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47216 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47389 * 119.99848 * 12 10 8 15 15 H 1.48501 * 109.47057 * 239.99829 * 12 10 8 16 16 C 1.38294 * 120.11209 * 0.25646 * 4 3 2 17 17 C 1.38123 * 120.05302 * 359.44942 * 16 4 3 18 18 C 1.38710 * 120.03036 * 180.02562 * 2 1 3 19 19 O 1.35905 * 120.05327 * 359.97438 * 18 2 1 20 20 H 1.09009 * 109.47223 * 89.99671 * 1 2 3 21 21 H 1.08999 * 109.47060 * 209.99563 * 1 2 3 22 22 H 1.09002 * 109.47351 * 329.99746 * 1 2 3 23 23 H 1.07994 * 119.96950 * 0.02600 * 3 2 1 24 24 H 1.08992 * 109.46894 * 330.00184 * 5 4 3 25 25 H 1.08996 * 109.46805 * 210.00334 * 5 4 3 26 26 H 1.09001 * 109.47372 * 60.00128 * 6 5 4 27 27 H 1.09004 * 109.47108 * 299.99872 * 6 5 4 28 28 H 1.09001 * 109.46832 * 59.99979 * 7 6 5 29 29 H 1.09000 * 109.47611 * 300.00276 * 7 6 5 30 30 H 0.97004 * 119.99507 * 180.02562 * 11 10 8 31 31 H 1.07994 * 119.97323 * 179.69960 * 16 4 3 32 32 H 1.08001 * 120.02757 * 180.24641 * 17 16 4 33 33 H 0.96704 * 113.99506 * 90.00337 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 -0.0005 5 6 4.3324 2.5031 -0.0011 6 6 4.5874 2.9454 1.4412 7 6 5.3510 4.2712 1.4406 8 6 5.6017 4.7072 2.8612 9 1 5.2517 4.0992 3.6823 10 6 6.2777 5.8822 3.1127 11 7 6.7035 6.6228 2.1127 12 14 6.5890 6.4222 4.8736 13 1 6.0130 5.4216 5.8074 14 1 8.0515 6.5327 5.1063 15 1 5.9496 7.7420 5.1070 16 6 4.2752 0.0009 -0.0064 17 6 3.5887 -1.1976 -0.0003 18 6 2.2011 -1.2009 -0.0005 19 8 1.5233 -2.3789 -0.0005 20 1 -0.3634 0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5139 23 1 1.6584 2.1315 0.0004 24 1 3.7421 3.2617 -0.5148 25 1 5.2848 2.3740 -0.5153 26 1 5.1779 2.1867 1.9549 27 1 3.6350 3.0744 1.9554 28 1 4.7610 5.0300 0.9267 29 1 6.3034 4.1418 0.9264 30 1 7.1794 7.4493 2.2896 31 1 5.3551 0.0041 -0.0117 32 1 4.1314 -2.1313 -0.0009 33 1 1.3269 -2.7195 -0.8840 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000204940228.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:39 Heat of formation + Delta-G solvation = -51.944391 kcal Electronic energy + Delta-G solvation = -14005.372546 eV Core-core repulsion = 11608.911208 eV Total energy + Delta-G solvation = -2396.461338 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.86307 -37.05830 -34.45153 -32.81002 -32.09522 -29.82099 -27.09414 -26.23415 -23.52954 -22.13688 -20.70795 -19.87799 -18.25831 -16.28968 -15.99736 -15.58947 -14.82526 -14.41497 -13.84165 -13.82132 -13.27634 -13.03687 -12.55533 -12.47608 -12.14497 -12.07312 -11.49895 -11.21616 -11.16245 -10.76592 -10.59215 -10.43966 -10.36030 -9.65681 -9.32553 -9.06434 -8.68602 -8.32945 -8.16596 -5.98039 -4.00046 1.35517 1.44796 3.32431 3.39832 3.44655 3.70896 4.25226 4.48218 4.86946 4.91892 5.11429 5.37832 5.39308 5.51101 5.57341 5.64234 5.78362 5.83673 6.01237 6.09987 6.21143 6.37829 6.46300 6.56070 6.60802 6.92427 6.94698 6.95795 7.16493 7.64559 7.70659 7.84983 8.02670 8.45887 9.07479 9.64076 11.13328 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.049849 B = 0.004770 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.558564 B = 5868.979505 C = 5931.408275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.110 4.110 3 C -0.107 4.107 4 C -0.066 4.066 5 C -0.085 4.085 6 C -0.103 4.103 7 C 0.020 3.980 8 C -0.519 4.519 9 H 0.055 0.945 10 C 0.056 3.944 11 N -0.896 5.896 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.110 4.110 17 C -0.139 4.139 18 C 0.082 3.918 19 O -0.498 6.498 20 H 0.065 0.935 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.126 0.874 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.259 0.741 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.439 -14.196 -7.238 18.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.111 4.111 3 C -0.125 4.125 4 C -0.066 4.066 5 C -0.122 4.122 6 C -0.140 4.140 7 C -0.017 4.017 8 C -0.557 4.557 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.128 4.128 17 C -0.157 4.157 18 C 0.038 3.962 19 O -0.307 6.307 20 H 0.084 0.916 21 H 0.089 0.911 22 H 0.086 0.914 23 H 0.144 0.856 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -9.318 -13.978 -6.655 18.069 hybrid contribution 0.265 0.298 0.470 0.617 sum -9.053 -13.680 -6.184 17.531 Atomic orbital electron populations 1.20668 0.91023 1.03070 1.01951 1.20174 0.96464 0.92613 1.01804 1.20906 0.93732 0.97141 1.00680 1.20242 0.93696 0.96018 0.96690 1.20806 0.99142 0.92230 1.00066 1.21627 1.00307 0.99838 0.92277 1.19133 0.95022 0.90594 0.96980 1.21317 1.35612 1.06148 0.92655 0.92678 1.25023 0.95815 0.96660 0.96987 1.69981 1.38918 1.14189 1.30527 0.86555 0.77888 0.78534 0.85161 1.19743 1.21013 1.21020 1.20980 1.00096 0.91363 1.00408 1.21337 0.93368 0.98666 1.02359 1.18225 0.89793 0.84600 1.03608 1.84814 1.76650 1.36263 1.33006 0.91616 0.91149 0.91443 0.85637 0.91346 0.91311 0.93305 0.93316 0.96583 0.96577 0.93104 0.85611 0.85828 0.76319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.79 36.00 0.35 -0.80 16 2 C -0.11 -1.45 5.89 -104.48 -0.62 -2.07 16 3 C -0.11 -1.53 9.35 -39.60 -0.37 -1.90 16 4 C -0.07 -1.03 5.14 -104.60 -0.54 -1.56 16 5 C -0.09 -1.46 5.34 -27.88 -0.15 -1.61 16 6 C -0.10 -2.16 5.13 -26.73 -0.14 -2.30 16 7 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 8 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 9 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 11 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 12 Si 0.89 21.94 29.54 -169.99 -5.02 16.91 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 C -0.11 -1.57 9.69 -39.60 -0.38 -1.96 16 17 C -0.14 -1.82 9.99 -39.43 -0.39 -2.21 16 18 C 0.08 1.07 6.68 -39.22 -0.26 0.81 16 19 O -0.50 -5.52 12.55 -19.44 -0.24 -5.77 16 20 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 21 H 0.07 0.72 7.53 -51.93 -0.39 0.33 16 22 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 23 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 24 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 25 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.38 2.36 9.06 45.56 0.41 2.78 16 LS Contribution 285.02 15.07 4.30 4.30 Total: -1.00 -31.95 285.02 -7.44 -39.39 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -4.16 Total: -1.38 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: -3.05 Total: -26.98 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.47 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.24 Total: -5.77 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.95 -7.44 -39.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000204940228.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.555 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds