Wall clock time and date at job start Sun Mar 29 2020 22:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38170 * 120.02918 * 2 1 4 4 C 1.38243 * 120.05667 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.94378 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.46946 * 90.00466 * 5 4 3 7 7 C 1.52997 * 109.46947 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.47238 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99515 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00176 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99883 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00043 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47216 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47389 * 119.99848 * 12 10 8 15 15 H 1.48501 * 109.47057 * 239.99829 * 12 10 8 16 16 C 1.38294 * 120.11209 * 0.25646 * 4 3 2 17 17 C 1.38123 * 120.05302 * 359.44942 * 16 4 3 18 18 C 1.38710 * 120.03036 * 180.02562 * 2 1 3 19 19 O 1.35905 * 120.05327 * 359.97438 * 18 2 1 20 20 H 1.09009 * 109.47223 * 89.99671 * 1 2 3 21 21 H 1.08999 * 109.47060 * 209.99563 * 1 2 3 22 22 H 1.09002 * 109.47351 * 329.99746 * 1 2 3 23 23 H 1.07994 * 119.96950 * 0.02600 * 3 2 1 24 24 H 1.08992 * 109.46894 * 330.00184 * 5 4 3 25 25 H 1.08996 * 109.46805 * 210.00334 * 5 4 3 26 26 H 1.09001 * 109.47372 * 60.00128 * 6 5 4 27 27 H 1.09004 * 109.47108 * 299.99872 * 6 5 4 28 28 H 1.09001 * 109.46832 * 59.99979 * 7 6 5 29 29 H 1.09000 * 109.47611 * 300.00276 * 7 6 5 30 30 H 0.97004 * 119.99507 * 180.02562 * 11 10 8 31 31 H 1.07994 * 119.97323 * 179.69960 * 16 4 3 32 32 H 1.08001 * 120.02757 * 180.24641 * 17 16 4 33 33 H 0.96704 * 113.99506 * 90.00337 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 -0.0005 5 6 4.3324 2.5031 -0.0011 6 6 4.5874 2.9454 1.4412 7 6 5.3510 4.2712 1.4406 8 6 5.6017 4.7072 2.8612 9 1 5.2517 4.0992 3.6823 10 6 6.2777 5.8822 3.1127 11 7 6.7035 6.6228 2.1127 12 14 6.5890 6.4222 4.8736 13 1 6.0130 5.4216 5.8074 14 1 8.0515 6.5327 5.1063 15 1 5.9496 7.7420 5.1070 16 6 4.2752 0.0009 -0.0064 17 6 3.5887 -1.1976 -0.0003 18 6 2.2011 -1.2009 -0.0005 19 8 1.5233 -2.3789 -0.0005 20 1 -0.3634 0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5139 23 1 1.6584 2.1315 0.0004 24 1 3.7421 3.2617 -0.5148 25 1 5.2848 2.3740 -0.5153 26 1 5.1779 2.1867 1.9549 27 1 3.6350 3.0744 1.9554 28 1 4.7610 5.0300 0.9267 29 1 6.3034 4.1418 0.9264 30 1 7.1794 7.4493 2.2896 31 1 5.3551 0.0041 -0.0117 32 1 4.1314 -2.1313 -0.0009 33 1 1.3269 -2.7195 -0.8840 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000204940228.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:38 Heat of formation + Delta-G solvation = -71.279954 kcal Electronic energy + Delta-G solvation = -14006.210999 eV Core-core repulsion = 11608.911208 eV Total energy + Delta-G solvation = -2397.299791 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.87293 -38.10530 -36.15298 -34.40698 -33.40637 -31.34077 -28.44304 -27.52832 -25.27561 -23.22731 -22.28187 -21.26950 -19.18990 -18.47034 -17.07782 -16.63852 -16.49959 -15.83954 -15.44868 -14.88233 -14.52075 -14.11005 -14.05008 -13.98031 -13.37860 -13.20672 -12.93433 -12.87981 -12.64932 -12.44157 -12.20014 -12.18573 -11.48827 -11.31499 -11.28168 -11.08069 -10.55949 -9.72016 -9.26912 -8.20437 -6.31577 0.30771 0.41109 1.39433 1.39480 1.53198 2.40647 2.67977 3.12408 3.35440 3.85607 3.92192 4.01050 4.29384 4.39999 4.53735 4.57203 4.68897 4.79958 4.82805 4.89706 4.99432 5.11599 5.20042 5.24748 5.31602 5.42208 5.53104 5.56510 5.68399 5.82330 5.85554 5.96978 6.26013 6.85340 6.89947 7.37719 8.91391 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.049849 B = 0.004770 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.558564 B = 5868.979505 C = 5931.408275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.118 4.118 3 C -0.116 4.116 4 C -0.087 4.087 5 C -0.074 4.074 6 C -0.089 4.089 7 C 0.023 3.977 8 C -0.545 4.545 9 H 0.056 0.944 10 C 0.000 4.000 11 N -0.933 5.933 12 Si 0.964 3.036 13 H -0.264 1.264 14 H -0.276 1.276 15 H -0.276 1.276 16 C -0.118 4.118 17 C -0.143 4.143 18 C 0.086 3.914 19 O -0.502 6.502 20 H 0.084 0.916 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.129 0.871 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.046 0.954 27 H 0.046 0.954 28 H -0.006 1.006 29 H -0.006 1.006 30 H 0.264 0.736 31 H 0.132 0.868 32 H 0.144 0.856 33 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.306 -15.501 -6.692 19.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.118 4.118 3 C -0.134 4.134 4 C -0.087 4.087 5 C -0.111 4.111 6 C -0.126 4.126 7 C -0.014 4.014 8 C -0.583 4.583 9 H 0.074 0.926 10 C -0.197 4.197 11 N -0.573 5.573 12 Si 0.789 3.211 13 H -0.188 1.188 14 H -0.202 1.202 15 H -0.202 1.202 16 C -0.136 4.136 17 C -0.161 4.161 18 C 0.042 3.958 19 O -0.315 6.315 20 H 0.103 0.897 21 H 0.092 0.908 22 H 0.088 0.912 23 H 0.147 0.853 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.012 0.988 29 H 0.013 0.987 30 H 0.073 0.927 31 H 0.150 0.850 32 H 0.162 0.838 33 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -10.200 -15.305 -6.129 19.386 hybrid contribution 0.492 0.629 0.248 0.837 sum -9.707 -14.675 -5.881 18.552 Atomic orbital electron populations 1.20701 0.89103 1.03333 1.03258 1.20463 0.97957 0.92208 1.01190 1.21032 0.93456 0.98045 1.00864 1.20080 0.94184 0.95290 0.99159 1.20588 0.99707 0.93590 0.97252 1.21394 0.99142 0.96986 0.95118 1.19047 0.94250 0.92691 0.95447 1.21742 1.35994 1.06711 0.93834 0.92579 1.25962 0.95344 0.96644 1.01766 1.70102 1.39488 1.14705 1.33009 0.85414 0.78040 0.78269 0.79424 1.18843 1.20187 1.20193 1.21113 1.00598 0.91479 1.00434 1.21561 0.93719 0.98984 1.01850 1.18345 0.89941 0.85228 1.02309 1.84751 1.76277 1.35330 1.35143 0.89723 0.90817 0.91218 0.85269 0.91274 0.91170 0.93507 0.93561 0.98762 0.98737 0.92725 0.85002 0.83836 0.73552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 9.79 71.23 0.70 -1.29 16 2 C -0.12 -2.88 5.89 -19.77 -0.12 -3.00 16 3 C -0.12 -3.23 9.35 22.25 0.21 -3.02 16 4 C -0.09 -2.65 5.14 -19.85 -0.10 -2.75 16 5 C -0.07 -2.57 5.34 29.85 0.16 -2.41 16 6 C -0.09 -3.79 5.13 30.59 0.16 -3.64 16 7 C 0.02 1.22 4.97 29.85 0.15 1.37 16 8 C -0.54 -31.90 9.11 25.60 0.23 -31.67 16 9 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 10 C 0.00 0.03 5.46 84.65 0.46 0.49 16 11 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 12 Si 0.96 45.01 29.54 68.60 2.03 47.03 16 13 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 14 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 15 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 16 C -0.12 -3.25 9.69 22.26 0.22 -3.03 16 17 C -0.14 -3.46 9.99 22.37 0.22 -3.23 16 18 C 0.09 2.05 6.68 22.51 0.15 2.20 16 19 O -0.50 -9.63 12.55 -92.48 -1.16 -10.79 16 20 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 21 H 0.07 1.32 7.53 -2.39 -0.02 1.30 16 22 H 0.07 1.25 8.09 -2.39 -0.02 1.23 16 23 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 24 H 0.07 2.34 8.08 -2.39 -0.02 2.32 16 25 H 0.07 2.37 8.08 -2.39 -0.02 2.35 16 26 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 28 H -0.01 -0.35 8.14 -2.39 -0.02 -0.36 16 29 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 30 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 33 H 0.41 3.66 9.06 -74.05 -0.67 2.99 16 Total: -1.00 -67.96 285.02 4.00 -63.96 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 0.41 Total: 6.91 kcal Atomic # 6 Polarization: -52.41 SS G_CDS: 2.44 Total: -49.97 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.28 Total: -57.14 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -1.16 Total: -10.79 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -67.96 4.00 -63.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000204940228.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.322 kcal (2) G-P(sol) polarization free energy of solvation -67.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds