Wall clock time and date at job start Sun Mar 29 2020 22:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38663 * 120.74583 * 2 1 4 4 C 1.38546 * 119.36896 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.54626 * 180.02562 * 4 3 2 6 6 N 1.31530 * 120.91150 * 359.73223 * 4 3 2 7 7 C 1.32785 * 121.63015 * 0.53412 * 6 4 3 8 8 C 1.48003 * 119.73436 * 179.74832 * 7 6 4 9 9 O 1.21573 * 120.00110 * 179.72373 * 8 7 6 10 10 N 1.34777 * 119.99953 * 359.72742 * 8 7 6 11 11 C 1.36783 * 119.99690 * 180.27918 * 10 8 7 12 12 H 1.08002 * 120.00536 * 359.71419 * 11 10 8 13 13 C 1.39115 * 119.99613 * 179.72236 * 11 10 8 14 14 N 1.31317 * 119.99668 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99930 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47154 * 90.00161 * 15 13 11 17 17 H 1.48502 * 109.46736 * 209.99941 * 15 13 11 18 18 H 1.48493 * 109.47010 * 329.99637 * 15 13 11 19 19 C 1.38534 * 120.75561 * 180.02562 * 2 1 3 20 20 H 1.08999 * 109.47527 * 269.97883 * 1 2 3 21 21 H 1.08995 * 109.47164 * 29.98487 * 1 2 3 22 22 H 1.09007 * 109.46729 * 149.98234 * 1 2 3 23 23 H 1.08007 * 120.31819 * 359.97438 * 3 2 1 24 24 H 1.09003 * 109.47496 * 89.99772 * 5 4 3 25 25 H 1.08999 * 109.47664 * 209.99530 * 5 4 3 26 26 H 1.09003 * 109.47353 * 329.99682 * 5 4 3 27 27 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 28 28 H 0.96998 * 120.00174 * 179.97438 * 14 13 11 29 29 H 1.08007 * 120.47267 * 359.95820 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1917 0.0000 4 6 3.6010 1.1584 -0.0005 5 6 4.3754 2.4512 0.0000 6 7 4.2494 0.0141 0.0042 7 6 3.6090 -1.1492 -0.0008 8 6 4.3808 -2.4120 -0.0008 9 8 3.7995 -3.4797 -0.0003 10 7 5.7281 -2.3783 -0.0012 11 6 6.4414 -3.5455 -0.0069 12 1 5.9250 -4.4940 -0.0065 13 6 7.8321 -3.5106 -0.0132 14 7 8.5169 -4.6311 -0.0182 15 14 8.7253 -1.8700 -0.0145 16 1 8.9684 -1.4377 1.3852 17 1 10.0237 -2.0140 -0.7207 18 1 7.8940 -0.8544 -0.7091 19 6 2.2155 -1.1905 -0.0005 20 1 -0.3634 -0.0004 1.0276 21 1 -0.3633 0.8901 -0.5136 22 1 -0.3633 -0.8899 -0.5142 23 1 1.6934 2.1370 -0.0004 24 1 4.5625 2.7623 1.0279 25 1 5.3255 2.3060 -0.5141 26 1 3.7985 3.2206 -0.5131 27 1 6.1920 -1.5264 -0.0019 28 1 9.4865 -4.6069 -0.0229 29 1 1.6956 -2.1372 -0.0003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306154353.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:56 Heat of formation + Delta-G solvation = -11.257448 kcal Electronic energy + Delta-G solvation = -14236.134202 eV Core-core repulsion = 11737.896839 eV Total energy + Delta-G solvation = -2498.237363 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.14317 -37.88597 -34.26982 -33.85127 -32.40077 -31.66777 -27.77313 -27.38292 -25.66580 -23.04369 -20.94849 -19.44978 -18.58676 -16.75864 -15.93922 -15.42267 -14.98293 -14.64225 -13.95411 -13.44907 -13.42338 -13.30178 -12.83302 -12.70765 -12.50991 -12.26244 -12.05624 -11.89278 -11.39118 -11.22514 -10.57873 -10.09862 -9.66942 -9.40049 -9.28003 -8.61011 -8.60324 -8.26787 -6.48287 -3.88343 1.10398 1.48944 3.04793 3.12520 3.14063 3.49501 4.03474 4.32859 4.40977 4.60327 4.72088 5.18833 5.20738 5.23591 5.35444 5.44891 5.51765 5.64970 5.71076 5.81229 5.88378 5.98798 6.17597 6.35428 6.51896 6.97095 7.44778 8.03853 8.19507 8.51971 8.82338 9.32567 9.79613 10.62546 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.035389 B = 0.008492 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.017904 B = 3296.416420 C = 4066.979548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.048 4.048 3 C -0.181 4.181 4 C 0.127 3.873 5 C -0.102 4.102 6 N -0.481 5.481 7 C 0.123 3.877 8 C 0.475 3.525 9 O -0.582 6.582 10 N -0.547 5.547 11 C -0.298 4.298 12 H 0.125 0.875 13 C 0.046 3.954 14 N -0.860 5.860 15 Si 0.877 3.123 16 H -0.266 1.266 17 H -0.273 1.273 18 H -0.259 1.259 19 C -0.136 4.136 20 H 0.074 0.926 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.130 0.870 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.384 0.616 28 H 0.279 0.721 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.750 14.737 0.042 17.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.056 4.056 3 C -0.202 4.202 4 C -0.013 4.013 5 C -0.159 4.159 6 N -0.195 5.195 7 C -0.015 4.015 8 C 0.262 3.738 9 O -0.467 6.467 10 N -0.182 5.182 11 C -0.428 4.428 12 H 0.143 0.857 13 C -0.160 4.160 14 N -0.497 5.497 15 Si 0.702 3.298 16 H -0.191 1.191 17 H -0.198 1.198 18 H -0.184 1.184 19 C -0.158 4.158 20 H 0.093 0.907 21 H 0.087 0.913 22 H 0.091 0.909 23 H 0.147 0.853 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.219 0.781 28 H 0.089 0.911 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.966 13.857 0.047 16.505 hybrid contribution -0.033 1.158 0.006 1.158 sum -9.000 15.015 0.053 17.506 Atomic orbital electron populations 1.20782 0.90313 1.03084 1.02675 1.20246 0.96586 0.92769 0.96006 1.21799 0.94675 0.98329 1.05394 1.21214 0.91147 0.93847 0.95106 1.20690 1.00344 0.91964 1.02905 1.67520 1.41171 0.97739 1.13073 1.21637 0.91929 0.92212 0.95733 1.17168 0.82374 0.86736 0.87509 1.90640 1.69210 1.29416 1.57418 1.42153 1.05561 1.09011 1.61430 1.19629 0.89273 0.87121 1.46737 0.85747 1.25165 0.96211 0.97895 0.96768 1.69586 1.07913 1.26265 1.45986 0.86651 0.80286 0.83268 0.79572 1.19118 1.19808 1.18418 1.21919 0.94139 0.99012 1.00696 0.90713 0.91308 0.90945 0.85255 0.90582 0.90485 0.90973 0.78090 0.91086 0.83866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.06 36.01 0.36 -0.76 15 2 C -0.05 -0.69 5.91 -104.35 -0.62 -1.30 15 3 C -0.18 -2.42 9.45 -39.31 -0.37 -2.79 15 4 C 0.13 1.96 6.78 -82.61 -0.56 1.40 15 5 C -0.10 -1.16 10.17 36.00 0.37 -0.79 15 6 N -0.48 -9.41 9.45 -6.07 -0.06 -9.46 15 7 C 0.12 2.62 6.75 -83.01 -0.56 2.06 15 8 C 0.48 12.20 7.76 -12.26 -0.10 12.10 15 9 O -0.58 -16.59 15.90 5.30 0.08 -16.51 15 10 N -0.55 -14.34 5.07 -11.79 -0.06 -14.40 15 11 C -0.30 -8.66 10.16 -15.02 -0.15 -8.81 15 12 H 0.12 4.03 7.38 -52.49 -0.39 3.64 15 13 C 0.05 1.27 5.50 -17.45 -0.10 1.17 15 14 N -0.86 -24.77 13.95 55.50 0.77 -23.99 15 15 Si 0.88 19.90 27.74 -169.99 -4.71 15.19 15 16 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 18 H -0.26 -5.64 6.52 56.52 0.37 -5.27 15 19 C -0.14 -2.46 9.34 -39.03 -0.36 -2.82 15 20 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 21 H 0.07 0.56 8.10 -51.93 -0.42 0.14 15 22 H 0.07 0.69 8.10 -51.93 -0.42 0.27 15 23 H 0.13 1.27 8.06 -52.48 -0.42 0.85 15 24 H 0.08 0.77 8.14 -51.93 -0.42 0.35 15 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 26 H 0.07 0.62 8.08 -51.93 -0.42 0.20 15 27 H 0.38 9.34 5.09 -40.82 -0.21 9.14 15 28 H 0.28 7.34 8.31 -40.82 -0.34 7.00 15 29 H 0.14 2.56 7.64 -52.48 -0.40 2.16 15 LS Contribution 259.89 15.07 3.92 3.92 Total: -1.00 -32.47 259.89 -5.26 -37.73 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -3.12 Total: 8.09 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -2.09 Total: -0.55 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.66 Total: -47.86 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.08 Total: -16.51 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.71 Total: 15.19 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.47 -5.26 -37.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306154353.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.471 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds