Wall clock time and date at job start Sun Mar 29 2020 22:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38663 * 120.74583 * 2 1 4 4 C 1.38546 * 119.36896 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.54626 * 180.02562 * 4 3 2 6 6 N 1.31530 * 120.91150 * 359.73223 * 4 3 2 7 7 C 1.32785 * 121.63015 * 0.53412 * 6 4 3 8 8 C 1.48003 * 119.73436 * 179.74832 * 7 6 4 9 9 O 1.21573 * 120.00110 * 179.72373 * 8 7 6 10 10 N 1.34777 * 119.99953 * 359.72742 * 8 7 6 11 11 C 1.36783 * 119.99690 * 180.27918 * 10 8 7 12 12 H 1.08002 * 120.00536 * 359.71419 * 11 10 8 13 13 C 1.39115 * 119.99613 * 179.72236 * 11 10 8 14 14 N 1.31317 * 119.99668 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99930 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47154 * 90.00161 * 15 13 11 17 17 H 1.48502 * 109.46736 * 209.99941 * 15 13 11 18 18 H 1.48493 * 109.47010 * 329.99637 * 15 13 11 19 19 C 1.38534 * 120.75561 * 180.02562 * 2 1 3 20 20 H 1.08999 * 109.47527 * 269.97883 * 1 2 3 21 21 H 1.08995 * 109.47164 * 29.98487 * 1 2 3 22 22 H 1.09007 * 109.46729 * 149.98234 * 1 2 3 23 23 H 1.08007 * 120.31819 * 359.97438 * 3 2 1 24 24 H 1.09003 * 109.47496 * 89.99772 * 5 4 3 25 25 H 1.08999 * 109.47664 * 209.99530 * 5 4 3 26 26 H 1.09003 * 109.47353 * 329.99682 * 5 4 3 27 27 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 28 28 H 0.96998 * 120.00174 * 179.97438 * 14 13 11 29 29 H 1.08007 * 120.47267 * 359.95820 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1917 0.0000 4 6 3.6010 1.1584 -0.0005 5 6 4.3754 2.4512 0.0000 6 7 4.2494 0.0141 0.0042 7 6 3.6090 -1.1492 -0.0008 8 6 4.3808 -2.4120 -0.0008 9 8 3.7995 -3.4797 -0.0003 10 7 5.7281 -2.3783 -0.0012 11 6 6.4414 -3.5455 -0.0069 12 1 5.9250 -4.4940 -0.0065 13 6 7.8321 -3.5106 -0.0132 14 7 8.5169 -4.6311 -0.0182 15 14 8.7253 -1.8700 -0.0145 16 1 8.9684 -1.4377 1.3852 17 1 10.0237 -2.0140 -0.7207 18 1 7.8940 -0.8544 -0.7091 19 6 2.2155 -1.1905 -0.0005 20 1 -0.3634 -0.0004 1.0276 21 1 -0.3633 0.8901 -0.5136 22 1 -0.3633 -0.8899 -0.5142 23 1 1.6934 2.1370 -0.0004 24 1 4.5625 2.7623 1.0279 25 1 5.3255 2.3060 -0.5141 26 1 3.7985 3.2206 -0.5131 27 1 6.1920 -1.5264 -0.0019 28 1 9.4865 -4.6069 -0.0229 29 1 1.6956 -2.1372 -0.0003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306154353.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:55 Heat of formation + Delta-G solvation = -35.322450 kcal Electronic energy + Delta-G solvation = -14237.177739 eV Core-core repulsion = 11737.896839 eV Total energy + Delta-G solvation = -2499.280900 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.56980 -39.81032 -36.26190 -35.13479 -34.01106 -33.45642 -28.93616 -28.38488 -27.55445 -24.70250 -22.14317 -21.36689 -20.54584 -18.41899 -17.36133 -16.90824 -16.76099 -16.13548 -15.70526 -15.07620 -15.01784 -14.60559 -14.30531 -14.09486 -13.68830 -13.35201 -13.18096 -13.04230 -12.91933 -12.53627 -12.51557 -12.06257 -11.67379 -11.03556 -10.47079 -10.40363 -10.39878 -9.92502 -8.58086 -6.13601 -0.27561 0.26059 1.25700 1.27981 1.38908 1.83709 2.12406 2.64542 2.76615 3.15815 3.24952 3.71327 3.87982 4.09333 4.11143 4.48257 4.57478 4.68982 4.79028 4.81567 4.86112 5.03641 5.16750 5.28701 5.32285 5.41991 5.75497 5.80992 6.39091 6.65964 6.89809 7.23249 7.75225 8.57898 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.035389 B = 0.008492 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.017904 B = 3296.416420 C = 4066.979548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.042 4.042 3 C -0.152 4.152 4 C 0.115 3.885 5 C -0.100 4.100 6 N -0.505 5.505 7 C 0.086 3.914 8 C 0.478 3.522 9 O -0.622 6.622 10 N -0.553 5.553 11 C -0.337 4.337 12 H 0.067 0.933 13 C 0.001 3.999 14 N -0.908 5.908 15 Si 0.955 3.045 16 H -0.252 1.252 17 H -0.258 1.258 18 H -0.245 1.245 19 C -0.145 4.145 20 H 0.091 0.909 21 H 0.100 0.900 22 H 0.071 0.929 23 H 0.183 0.817 24 H 0.091 0.909 25 H 0.067 0.933 26 H 0.110 0.890 27 H 0.395 0.605 28 H 0.287 0.713 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.268 19.820 0.051 22.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.050 4.050 3 C -0.171 4.171 4 C -0.025 4.025 5 C -0.157 4.157 6 N -0.219 5.219 7 C -0.051 4.051 8 C 0.266 3.734 9 O -0.509 6.509 10 N -0.190 5.190 11 C -0.466 4.466 12 H 0.085 0.915 13 C -0.202 4.202 14 N -0.547 5.547 15 Si 0.774 3.226 16 H -0.176 1.176 17 H -0.182 1.182 18 H -0.169 1.169 19 C -0.167 4.167 20 H 0.110 0.890 21 H 0.119 0.881 22 H 0.090 0.910 23 H 0.201 0.799 24 H 0.110 0.890 25 H 0.086 0.914 26 H 0.128 0.872 27 H 0.231 0.769 28 H 0.097 0.903 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.493 18.937 0.056 21.650 hybrid contribution 0.130 -0.287 0.009 0.316 sum -10.362 18.650 0.064 21.335 Atomic orbital electron populations 1.20907 0.86779 1.04731 1.04205 1.20745 0.98925 0.91403 0.93890 1.22426 0.93900 1.00020 1.00802 1.22063 0.92872 0.93752 0.93845 1.20849 1.00033 0.90486 1.04331 1.67398 1.42335 0.98269 1.13904 1.20956 0.92511 0.91074 1.00540 1.18097 0.82392 0.88270 0.84638 1.90586 1.70189 1.31937 1.58223 1.41942 1.05711 1.08329 1.62977 1.19191 0.90301 0.86345 1.50761 0.91486 1.26085 0.96219 1.02699 0.95159 1.69711 1.08714 1.29057 1.47194 0.85496 0.79026 0.77536 0.80519 1.17611 1.18223 1.16866 1.22002 0.93023 1.00610 1.01021 0.89027 0.88110 0.90968 0.79941 0.89016 0.91430 0.87191 0.76882 0.90308 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.06 71.24 0.72 -0.94 15 2 C -0.04 -1.03 5.91 -19.69 -0.12 -1.15 15 3 C -0.15 -3.19 9.45 22.44 0.21 -2.98 15 4 C 0.12 3.09 6.78 42.68 0.29 3.38 15 5 C -0.10 -1.77 10.17 71.24 0.72 -1.04 15 6 N -0.50 -19.05 9.45 -173.12 -1.64 -20.68 15 7 C 0.09 3.69 6.75 41.87 0.28 3.97 15 8 C 0.48 25.96 7.76 86.83 0.67 26.64 15 9 O -0.62 -38.22 15.90 -3.95 -0.06 -38.28 15 10 N -0.55 -30.50 5.07 -309.49 -1.57 -32.07 15 11 C -0.34 -21.05 10.16 84.13 0.85 -20.20 15 12 H 0.07 4.82 7.38 -2.91 -0.02 4.80 15 13 C 0.00 0.03 5.50 84.98 0.47 0.50 15 14 N -0.91 -54.99 13.95 21.69 0.30 -54.69 15 15 Si 0.96 41.56 27.74 68.60 1.90 43.46 15 16 H -0.25 -10.36 7.11 99.48 0.71 -9.66 15 17 H -0.26 -10.55 7.11 99.48 0.71 -9.85 15 18 H -0.24 -9.95 6.52 99.48 0.65 -9.30 15 19 C -0.14 -5.15 9.34 22.62 0.21 -4.94 15 20 H 0.09 1.16 8.14 -2.39 -0.02 1.14 15 21 H 0.10 0.95 8.10 -2.39 -0.02 0.93 15 22 H 0.07 1.14 8.10 -2.38 -0.02 1.12 15 23 H 0.18 2.00 8.06 -2.91 -0.02 1.97 15 24 H 0.09 1.39 8.14 -2.39 -0.02 1.37 15 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 15 26 H 0.11 1.14 8.08 -2.39 -0.02 1.12 15 27 H 0.39 19.58 5.09 -92.71 -0.47 19.10 15 28 H 0.29 15.64 8.31 -92.71 -0.77 14.87 15 29 H 0.13 4.86 7.64 -2.91 -0.02 4.84 15 Total: -1.00 -79.09 259.89 3.89 -75.20 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.64 Total: 23.81 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 4.32 Total: 3.25 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -2.90 Total: -107.44 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -0.06 Total: -38.28 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.90 Total: 43.46 kcal Total: -79.09 3.89 -75.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306154353.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.877 kcal (2) G-P(sol) polarization free energy of solvation -79.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds