Wall clock time and date at job start Sun Mar 29 2020 21:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38239 * 119.99994 * 2 1 4 4 C 1.38240 * 119.99845 * 179.76810 * 3 2 1 5 5 C 1.38233 * 119.99651 * 0.48354 * 4 3 2 6 6 C 1.38230 * 120.00450 * 359.79651 * 5 4 3 7 7 C 1.50701 * 120.00368 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00042 * 359.94873 * 6 5 4 9 9 C 1.50698 * 120.00176 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.47284 * 14.82864 * 9 8 6 11 11 C 1.53009 * 109.46762 * 254.83345 * 9 8 6 12 12 N 1.46499 * 109.47131 * 134.83577 * 9 8 6 13 13 C 1.36943 * 119.99842 * 194.59348 * 12 9 8 14 14 H 1.08001 * 119.99862 * 0.02562 * 13 12 9 15 15 C 1.38812 * 119.99700 * 179.97438 * 13 12 9 16 16 N 1.31611 * 120.00105 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99597 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47092 * 60.00352 * 17 15 13 19 19 H 1.48497 * 109.46998 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47435 * 300.00176 * 17 15 13 21 21 H 1.09003 * 109.46587 * 274.65497 * 1 2 3 22 22 H 1.08989 * 109.46929 * 154.65655 * 1 2 3 23 23 H 1.09002 * 109.46900 * 34.65160 * 1 2 3 24 24 H 1.07995 * 120.00181 * 0.02562 * 3 2 1 25 25 H 1.07996 * 120.00290 * 180.25571 * 4 3 2 26 26 H 1.08005 * 119.99935 * 179.76747 * 5 4 3 27 27 H 1.09008 * 109.46697 * 263.76794 * 7 6 5 28 28 H 1.09006 * 109.47037 * 23.76167 * 7 6 5 29 29 H 1.08997 * 109.47410 * 143.76612 * 7 6 5 30 30 H 1.09003 * 109.47053 * 186.69991 * 11 9 8 31 31 H 1.08999 * 109.47231 * 306.69845 * 11 9 8 32 32 H 1.08997 * 109.46821 * 66.69968 * 11 9 8 33 33 H 0.96995 * 120.00331 * 14.60013 * 12 9 8 34 34 H 0.97004 * 119.99595 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 0.0048 5 6 4.2717 0.0000 -0.0004 6 6 3.5805 -1.1971 -0.0063 7 6 4.3340 -2.5023 -0.0126 8 6 2.1982 -1.1971 -0.0058 9 6 1.4447 -2.5022 -0.0116 10 1 2.1234 -3.3148 0.2474 11 6 0.8624 -2.7486 -1.4049 12 7 0.3575 -2.4427 0.9685 13 6 -0.2746 -3.5926 1.3606 14 1 0.0287 -4.5432 0.9475 15 6 -1.3044 -3.5362 2.2897 16 7 -1.6736 -2.3777 2.7934 17 14 -2.1661 -5.1048 2.8250 18 1 -1.1780 -6.0272 3.4400 19 1 -3.2213 -4.7761 3.8167 20 1 -2.7843 -5.7580 1.6433 21 1 -0.3632 0.0834 1.0243 22 1 -0.3633 -0.9287 -0.4398 23 1 -0.3633 0.8454 -0.5843 24 1 1.6582 2.1325 0.0004 25 1 4.1206 2.1324 0.0090 26 1 5.3517 -0.0001 -0.0004 27 1 4.4190 -2.8677 -1.0361 28 1 5.3302 -2.3487 0.4023 29 1 3.7978 -3.2343 0.5913 30 1 0.2199 -3.6289 -1.3797 31 1 0.2785 -1.8814 -1.7133 32 1 1.6738 -2.9113 -2.1142 33 1 0.0853 -1.5890 1.3397 34 1 -2.3935 -2.3384 3.4424 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306225090.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:27 Heat of formation + Delta-G solvation = 32.943390 kcal Electronic energy + Delta-G solvation = -15004.846481 eV Core-core repulsion = 12709.784815 eV Total energy + Delta-G solvation = -2295.061665 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.55666 -35.53079 -33.17975 -32.34800 -30.13860 -28.30798 -26.79609 -26.27526 -24.08954 -21.91507 -20.21196 -19.64587 -17.28016 -15.64695 -15.44498 -14.57466 -14.11721 -13.82204 -13.40843 -13.18945 -12.83622 -12.50023 -12.30381 -12.21578 -12.04418 -11.40351 -11.22795 -11.11190 -11.00189 -10.80067 -10.74577 -10.46709 -10.19169 -9.70296 -9.51584 -8.86498 -8.13391 -8.04409 -6.90033 -5.74568 -3.02025 1.79710 1.83795 3.45213 3.49756 3.50551 4.16678 4.62099 5.19712 5.21680 5.35824 5.44926 5.56724 5.65926 5.72743 5.87477 5.95230 6.02104 6.08683 6.09781 6.28501 6.31107 6.44931 6.52072 6.58387 6.63972 6.78464 6.88125 6.91775 6.99123 7.16719 7.33961 7.50970 7.72368 8.45359 9.56537 10.14146 10.50734 11.48277 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.036713 B = 0.008512 C = 0.007749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.482771 B = 3288.601463 C = 3612.393919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.062 4.062 3 C -0.132 4.132 4 C -0.126 4.126 5 C -0.134 4.134 6 C -0.081 4.081 7 C -0.116 4.116 8 C -0.073 4.073 9 C 0.203 3.797 10 H 0.053 0.947 11 C -0.164 4.164 12 N -0.726 5.726 13 C -0.238 4.238 14 H 0.069 0.931 15 C -0.013 4.013 16 N -0.933 5.933 17 Si 0.906 3.094 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.286 1.286 21 H 0.082 0.918 22 H 0.098 0.902 23 H 0.049 0.951 24 H 0.115 0.885 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.036 0.964 33 H 0.391 0.609 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.286 4.467 -6.865 12.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.063 4.063 3 C -0.150 4.150 4 C -0.144 4.144 5 C -0.152 4.152 6 C -0.082 4.082 7 C -0.172 4.172 8 C -0.073 4.073 9 C 0.094 3.906 10 H 0.070 0.930 11 C -0.224 4.224 12 N -0.372 5.372 13 C -0.369 4.369 14 H 0.087 0.913 15 C -0.209 4.209 16 N -0.582 5.582 17 Si 0.737 3.263 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.213 1.213 21 H 0.101 0.899 22 H 0.116 0.884 23 H 0.068 0.932 24 H 0.133 0.867 25 H 0.131 0.869 26 H 0.132 0.868 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.230 0.770 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.207 4.299 -6.805 12.230 hybrid contribution -0.558 -0.436 0.519 0.878 sum 8.650 3.863 -6.286 11.369 Atomic orbital electron populations 1.21276 0.90632 1.03620 1.03326 1.19870 0.96624 0.92243 0.97537 1.20967 0.94118 0.97399 1.02553 1.20951 0.94287 0.97457 1.01753 1.20858 0.98996 0.92140 1.03232 1.19717 0.93229 0.95175 1.00049 1.20846 0.99221 0.95029 1.02126 1.20063 0.92833 0.95687 0.98737 1.19272 0.89780 0.91382 0.90176 0.92954 1.22481 1.00112 1.01971 0.97798 1.42989 1.37938 1.08155 1.48112 1.19202 1.11627 0.87332 1.18772 0.91273 1.24711 0.99611 0.96689 0.99888 1.69643 1.31949 1.22950 1.33610 0.86281 0.79143 0.82781 0.78052 1.21367 1.21746 1.21326 0.89931 0.88369 0.93190 0.86681 0.86861 0.86840 0.91537 0.92240 0.90579 0.92150 0.92954 0.94500 0.77049 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 7.93 36.01 0.29 -2.24 16 2 C -0.06 -1.16 5.62 -104.62 -0.59 -1.75 16 3 C -0.13 -2.14 9.72 -39.58 -0.38 -2.52 16 4 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 5 C -0.13 -2.01 9.68 -39.59 -0.38 -2.39 16 6 C -0.08 -1.36 5.88 -104.63 -0.62 -1.97 16 7 C -0.12 -1.64 9.37 36.01 0.34 -1.30 16 8 C -0.07 -1.39 4.93 -104.62 -0.52 -1.90 16 9 C 0.20 4.22 2.67 -69.08 -0.18 4.04 16 10 H 0.05 1.09 5.61 -51.93 -0.29 0.80 16 11 C -0.16 -3.10 9.04 37.16 0.34 -2.76 16 12 N -0.73 -18.29 4.08 -54.55 -0.22 -18.51 16 13 C -0.24 -6.58 9.59 -15.06 -0.14 -6.72 16 14 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 15 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 16 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 17 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H 0.08 1.75 7.13 -51.93 -0.37 1.38 16 22 H 0.10 2.05 4.05 -51.94 -0.21 1.84 16 23 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 24 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 25 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 26 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 27 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 28 H 0.06 0.72 8.04 -51.93 -0.42 0.30 16 29 H 0.08 1.17 6.23 -51.93 -0.32 0.85 16 30 H 0.06 1.20 7.87 -51.93 -0.41 0.79 16 31 H 0.05 0.98 5.99 -51.93 -0.31 0.67 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.39 10.25 4.32 -40.82 -0.18 10.08 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 271.95 15.07 4.10 4.10 Total: -1.00 -29.86 271.95 -7.36 -37.22 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -4.59 Total: 9.29 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -2.35 Total: -22.25 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.50 Total: -45.70 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.86 -7.36 -37.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306225090.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.164 kcal (2) G-P(sol) polarization free energy of solvation -29.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds