Wall clock time and date at job start Sun Mar 29 2020 21:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38239 * 119.99994 * 2 1 4 4 C 1.38240 * 119.99845 * 179.76810 * 3 2 1 5 5 C 1.38233 * 119.99651 * 0.48354 * 4 3 2 6 6 C 1.38230 * 120.00450 * 359.79651 * 5 4 3 7 7 C 1.50701 * 120.00368 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00042 * 359.94873 * 6 5 4 9 9 C 1.50698 * 120.00176 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.47284 * 14.82864 * 9 8 6 11 11 C 1.53009 * 109.46762 * 254.83345 * 9 8 6 12 12 N 1.46499 * 109.47131 * 134.83577 * 9 8 6 13 13 C 1.36943 * 119.99842 * 194.59348 * 12 9 8 14 14 H 1.08001 * 119.99862 * 0.02562 * 13 12 9 15 15 C 1.38812 * 119.99700 * 179.97438 * 13 12 9 16 16 N 1.31611 * 120.00105 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99597 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47092 * 60.00352 * 17 15 13 19 19 H 1.48497 * 109.46998 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47435 * 300.00176 * 17 15 13 21 21 H 1.09003 * 109.46587 * 274.65497 * 1 2 3 22 22 H 1.08989 * 109.46929 * 154.65655 * 1 2 3 23 23 H 1.09002 * 109.46900 * 34.65160 * 1 2 3 24 24 H 1.07995 * 120.00181 * 0.02562 * 3 2 1 25 25 H 1.07996 * 120.00290 * 180.25571 * 4 3 2 26 26 H 1.08005 * 119.99935 * 179.76747 * 5 4 3 27 27 H 1.09008 * 109.46697 * 263.76794 * 7 6 5 28 28 H 1.09006 * 109.47037 * 23.76167 * 7 6 5 29 29 H 1.08997 * 109.47410 * 143.76612 * 7 6 5 30 30 H 1.09003 * 109.47053 * 186.69991 * 11 9 8 31 31 H 1.08999 * 109.47231 * 306.69845 * 11 9 8 32 32 H 1.08997 * 109.46821 * 66.69968 * 11 9 8 33 33 H 0.96995 * 120.00331 * 14.60013 * 12 9 8 34 34 H 0.97004 * 119.99595 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 0.0048 5 6 4.2717 0.0000 -0.0004 6 6 3.5805 -1.1971 -0.0063 7 6 4.3340 -2.5023 -0.0126 8 6 2.1982 -1.1971 -0.0058 9 6 1.4447 -2.5022 -0.0116 10 1 2.1234 -3.3148 0.2474 11 6 0.8624 -2.7486 -1.4049 12 7 0.3575 -2.4427 0.9685 13 6 -0.2746 -3.5926 1.3606 14 1 0.0287 -4.5432 0.9475 15 6 -1.3044 -3.5362 2.2897 16 7 -1.6736 -2.3777 2.7934 17 14 -2.1661 -5.1048 2.8250 18 1 -1.1780 -6.0272 3.4400 19 1 -3.2213 -4.7761 3.8167 20 1 -2.7843 -5.7580 1.6433 21 1 -0.3632 0.0834 1.0243 22 1 -0.3633 -0.9287 -0.4398 23 1 -0.3633 0.8454 -0.5843 24 1 1.6582 2.1325 0.0004 25 1 4.1206 2.1324 0.0090 26 1 5.3517 -0.0001 -0.0004 27 1 4.4190 -2.8677 -1.0361 28 1 5.3302 -2.3487 0.4023 29 1 3.7978 -3.2343 0.5913 30 1 0.2199 -3.6289 -1.3797 31 1 0.2785 -1.8814 -1.7133 32 1 1.6738 -2.9113 -2.1142 33 1 0.0853 -1.5890 1.3397 34 1 -2.3935 -2.3384 3.4424 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306225090.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:27 Heat of formation + Delta-G solvation = 16.505294 kcal Electronic energy + Delta-G solvation = -15005.559290 eV Core-core repulsion = 12709.784815 eV Total energy + Delta-G solvation = -2295.774475 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.89339 -37.18284 -34.45884 -34.23714 -31.73248 -30.03869 -28.17108 -27.52132 -26.03340 -23.46474 -21.48845 -21.13612 -19.25016 -17.10926 -16.95099 -16.19667 -15.73953 -15.30148 -14.96928 -14.82333 -14.17704 -13.86356 -13.69059 -13.62161 -13.53696 -13.10257 -12.82225 -12.69267 -12.50154 -12.48061 -12.31575 -12.14009 -11.81651 -11.57656 -11.14403 -10.85936 -9.41535 -9.35797 -8.93241 -7.90707 -5.17879 0.54521 0.55710 1.47319 1.50086 1.56022 2.57895 2.90759 3.42590 3.90240 3.97946 4.09500 4.14968 4.21826 4.44260 4.50501 4.64982 4.70917 4.77333 4.83468 4.89128 4.91522 5.00310 5.04456 5.16237 5.27902 5.31313 5.42400 5.53245 5.58841 5.67336 5.75913 5.96143 6.25218 6.32164 7.38813 8.15441 8.41848 9.32642 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.036713 B = 0.008512 C = 0.007749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.482771 B = 3288.601463 C = 3612.393919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.087 4.087 3 C -0.139 4.139 4 C -0.119 4.119 5 C -0.131 4.131 6 C -0.092 4.092 7 C -0.114 4.114 8 C -0.100 4.100 9 C 0.199 3.801 10 H 0.051 0.949 11 C -0.154 4.154 12 N -0.738 5.738 13 C -0.238 4.238 14 H 0.074 0.926 15 C -0.075 4.075 16 N -0.968 5.968 17 Si 0.971 3.029 18 H -0.280 1.280 19 H -0.297 1.297 20 H -0.279 1.279 21 H 0.051 0.949 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.134 0.866 25 H 0.150 0.850 26 H 0.148 0.852 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.383 0.617 34 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.388 4.876 -7.731 14.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.087 4.087 3 C -0.156 4.156 4 C -0.137 4.137 5 C -0.149 4.149 6 C -0.092 4.092 7 C -0.170 4.170 8 C -0.101 4.101 9 C 0.092 3.908 10 H 0.068 0.932 11 C -0.213 4.213 12 N -0.384 5.384 13 C -0.370 4.370 14 H 0.092 0.908 15 C -0.268 4.268 16 N -0.619 5.619 17 Si 0.800 3.200 18 H -0.206 1.206 19 H -0.223 1.223 20 H -0.205 1.205 21 H 0.069 0.931 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.152 0.848 25 H 0.168 0.832 26 H 0.166 0.834 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.220 0.780 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 11.344 4.692 -7.710 14.496 hybrid contribution -1.090 -0.500 0.722 1.400 sum 10.254 4.193 -6.988 13.098 Atomic orbital electron populations 1.21062 0.91876 1.03362 1.01430 1.19926 0.96024 0.93391 0.99352 1.21235 0.95215 0.97134 1.02061 1.21402 0.93712 0.99054 0.99558 1.21280 1.00751 0.91358 1.01499 1.20048 0.92430 0.97140 0.99595 1.20866 0.99840 0.93392 1.02901 1.20011 0.94036 0.94712 1.01330 1.19410 0.88759 0.92896 0.89766 0.93154 1.22330 1.00577 1.00997 0.97411 1.43198 1.39073 1.07109 1.48978 1.19581 1.11240 0.88311 1.17886 0.90832 1.25497 1.00915 0.99592 1.00758 1.69812 1.32651 1.24896 1.34558 0.85253 0.77867 0.79350 0.77537 1.20648 1.22299 1.20483 0.93088 0.90691 0.90837 0.84814 0.83247 0.83446 0.90017 0.89744 0.92561 0.93783 0.93261 0.91736 0.77995 0.94174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.75 7.93 71.24 0.56 -4.18 16 2 C -0.09 -3.19 5.62 -19.86 -0.11 -3.30 16 3 C -0.14 -4.19 9.72 22.27 0.22 -3.97 16 4 C -0.12 -3.06 10.05 22.27 0.22 -2.83 16 5 C -0.13 -3.42 9.68 22.27 0.22 -3.21 16 6 C -0.09 -2.87 5.88 -19.87 -0.12 -2.98 16 7 C -0.11 -2.95 9.37 71.24 0.67 -2.28 16 8 C -0.10 -3.78 4.93 -19.87 -0.10 -3.88 16 9 C 0.20 8.38 2.67 44.25 0.12 8.49 16 10 H 0.05 2.12 5.61 -2.39 -0.01 2.11 16 11 C -0.15 -5.82 9.04 71.99 0.65 -5.17 16 12 N -0.74 -38.33 4.08 -326.49 -1.33 -39.67 16 13 C -0.24 -13.43 9.59 84.03 0.81 -12.63 16 14 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 15 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 16 N -0.97 -59.82 13.06 21.65 0.28 -59.53 16 17 Si 0.97 46.79 29.55 68.60 2.03 48.82 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 H 0.05 2.29 7.13 -2.39 -0.02 2.27 16 22 H 0.07 3.27 4.05 -2.39 -0.01 3.26 16 23 H 0.07 2.41 8.12 -2.39 -0.02 2.39 16 24 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 25 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 26 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 27 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.08 1.74 8.04 -2.38 -0.02 1.72 16 29 H 0.06 1.68 6.23 -2.39 -0.01 1.67 16 30 H 0.04 1.76 7.87 -2.39 -0.02 1.75 16 31 H 0.05 1.87 5.99 -2.39 -0.01 1.86 16 32 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.38 20.97 4.32 -92.71 -0.40 20.57 16 34 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -65.27 271.95 5.27 -59.99 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.69 Total: 30.26 kcal Atomic # 6 Polarization: -43.47 SS G_CDS: 3.60 Total: -39.87 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -1.05 Total: -99.20 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -65.27 5.27 -59.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306225090.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.499 kcal (2) G-P(sol) polarization free energy of solvation -65.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds