Wall clock time and date at job start Sun Mar 29 2020 22:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38669 * 120.41888 * 2 1 4 4 C 1.38631 * 118.42236 * 180.02562 * 3 2 1 5 5 C 1.38228 * 119.16061 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.62125 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.46700 * 94.99978 * 6 5 4 8 8 C 1.34784 * 119.99893 * 180.02562 * 7 6 5 9 9 O 1.21682 * 119.99954 * 359.97438 * 8 7 6 10 10 C 1.46368 * 119.99916 * 179.72943 * 8 7 6 11 11 H 1.07998 * 120.00437 * 359.97438 * 10 8 7 12 12 C 1.40055 * 119.99853 * 179.97438 * 10 8 7 13 13 N 1.30662 * 119.99894 * 359.97438 * 12 10 8 14 14 Si 1.86805 * 119.99877 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47029 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47165 * 120.00059 * 14 12 10 17 17 H 1.48495 * 109.46978 * 240.00192 * 14 12 10 18 18 N 1.31858 * 120.76179 * 0.25928 * 5 4 3 19 19 C 1.31889 * 121.72667 * 359.47039 * 18 5 4 20 20 H 1.09004 * 109.46804 * 90.00361 * 1 2 3 21 21 H 1.08999 * 109.47031 * 209.99980 * 1 2 3 22 22 H 1.08995 * 109.47273 * 330.00235 * 1 2 3 23 23 H 1.07999 * 120.78742 * 359.97438 * 3 2 1 24 24 H 1.07994 * 120.42201 * 180.02562 * 4 3 2 25 25 H 1.08998 * 109.46743 * 335.00454 * 6 5 4 26 26 H 1.08994 * 109.47542 * 215.00313 * 6 5 4 27 27 H 0.97005 * 120.00261 * 0.02562 * 7 6 5 28 28 H 0.97000 * 120.00244 * 179.97438 * 13 12 10 29 29 H 1.07997 * 119.62032 * 180.27022 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1475 -0.0005 5 6 4.2256 -0.0823 -0.0005 6 6 5.7312 -0.1469 -0.0017 7 7 6.2150 -0.2875 1.3740 8 6 7.5382 -0.3652 1.6184 9 8 8.3309 -0.3189 0.6964 10 6 8.0217 -0.4997 2.9933 11 1 7.3183 -0.5363 3.8120 12 6 9.3967 -0.5809 3.2473 13 7 10.2477 -0.5371 2.2568 14 14 10.0138 -0.7519 5.0021 15 1 8.8573 -0.7768 5.9334 16 1 10.7844 -2.0143 5.1351 17 1 10.8904 0.4002 5.3330 18 7 3.5255 -1.1996 -0.0051 19 6 2.2066 -1.1917 0.0005 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6889 2.1423 -0.0004 24 1 4.1735 2.0591 -0.0001 25 1 6.1337 0.7679 -0.4366 26 1 6.0577 -1.0037 -0.5910 27 1 5.5830 -0.3248 2.1089 28 1 11.1999 -0.5930 2.4326 29 1 1.6672 -2.1273 0.0009 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306987765.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:46 Heat of formation + Delta-G solvation = -14.344913 kcal Electronic energy + Delta-G solvation = -13878.198594 eV Core-core repulsion = 11379.827348 eV Total energy + Delta-G solvation = -2498.371246 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.20236 -37.18967 -34.33473 -32.84579 -32.27784 -31.50823 -28.38216 -26.29411 -24.46395 -23.31405 -21.32030 -19.64823 -17.47603 -16.55460 -15.89908 -15.29943 -15.02210 -14.57153 -14.02936 -13.86298 -13.43313 -13.00583 -12.72262 -12.62376 -12.52213 -12.06977 -11.39058 -11.32713 -11.08749 -10.89223 -10.43993 -10.17438 -9.72228 -9.27148 -8.83469 -8.80134 -7.57664 -7.48348 -6.15942 -4.60973 1.13082 1.35778 3.15381 3.23301 3.28151 3.80223 4.15279 4.43148 4.61906 4.74566 4.79433 4.95552 4.99279 5.19048 5.38800 5.43382 5.56592 5.74217 5.79825 5.87979 6.07349 6.24247 6.38815 6.52640 6.79870 7.46575 7.94363 8.09442 8.15762 8.35995 9.05325 9.55214 10.62492 10.80795 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.055925 B = 0.005467 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.549936 B = 5120.020520 C = 5325.470220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.149 4.149 3 C -0.080 4.080 4 C -0.154 4.154 5 C 0.122 3.878 6 C 0.181 3.819 7 N -0.759 5.759 8 C 0.556 3.444 9 O -0.580 6.580 10 C -0.543 4.543 11 H 0.068 0.932 12 C 0.087 3.913 13 N -0.768 5.768 14 Si 0.908 3.092 15 H -0.264 1.264 16 H -0.276 1.276 17 H -0.276 1.276 18 N -0.468 5.468 19 C 0.097 3.903 20 H 0.070 0.930 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.132 0.868 24 H 0.137 0.863 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.380 0.620 28 H 0.268 0.732 29 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.944 2.662 -2.107 17.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.151 4.151 3 C -0.106 4.106 4 C -0.174 4.174 5 C -0.015 4.015 6 C 0.056 3.944 7 N -0.415 5.415 8 C 0.360 3.640 9 O -0.463 6.463 10 C -0.580 4.580 11 H 0.086 0.914 12 C -0.133 4.133 13 N -0.397 5.397 14 Si 0.733 3.267 15 H -0.188 1.188 16 H -0.201 1.201 17 H -0.202 1.202 18 N -0.176 5.176 19 C -0.061 4.061 20 H 0.088 0.912 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.149 0.851 24 H 0.155 0.845 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.212 0.788 28 H 0.078 0.922 29 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.683 1.892 -2.883 16.058 hybrid contribution -0.533 0.723 1.189 1.490 sum -16.216 2.615 -1.695 16.512 Atomic orbital electron populations 1.20681 0.90462 1.02921 1.02310 1.20913 0.97379 0.94434 1.02419 1.21452 0.93987 0.98017 0.97116 1.22071 0.94973 0.99398 1.00986 1.21622 0.97215 0.88222 0.94483 1.19735 0.84548 1.01856 0.88301 1.46118 1.08602 1.82134 1.04671 1.18244 0.78817 0.76388 0.90527 1.90598 1.54006 1.55157 1.46522 1.20896 0.92083 1.53704 0.91316 0.91392 1.25713 0.96719 0.92695 0.98131 1.70029 1.02437 1.35478 1.31752 0.86307 0.79201 0.78230 0.82956 1.18796 1.20149 1.20180 1.67583 1.07865 1.31320 1.10851 1.22679 0.89901 0.97328 0.96174 0.91160 0.91295 0.91532 0.85057 0.84534 0.91700 0.91509 0.78840 0.92158 0.83062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.04 36.01 0.36 -0.44 15 2 C -0.15 -1.68 5.90 -104.48 -0.62 -2.29 15 3 C -0.08 -0.93 9.86 -39.28 -0.39 -1.31 15 4 C -0.15 -2.16 9.72 -39.44 -0.38 -2.55 15 5 C 0.12 2.09 6.15 -82.59 -0.51 1.58 15 6 C 0.18 3.74 5.98 -5.19 -0.03 3.71 15 7 N -0.76 -17.98 5.54 -62.91 -0.35 -18.33 15 8 C 0.56 16.31 7.75 -12.99 -0.10 16.21 15 9 O -0.58 -19.20 15.02 5.20 0.08 -19.13 15 10 C -0.54 -15.73 9.54 -35.63 -0.34 -16.07 15 11 H 0.07 1.82 7.85 -52.49 -0.41 1.40 15 12 C 0.09 2.47 5.50 -17.37 -0.10 2.38 15 13 N -0.77 -23.41 11.83 55.55 0.66 -22.76 15 14 Si 0.91 20.48 29.56 -169.99 -5.02 15.46 15 15 H -0.26 -5.75 7.11 56.52 0.40 -5.35 15 16 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 18 N -0.47 -7.95 10.27 -9.47 -0.10 -8.04 15 19 C 0.10 1.29 10.86 -17.55 -0.19 1.10 15 20 H 0.07 0.46 8.14 -51.93 -0.42 0.04 15 21 H 0.07 0.45 8.09 -51.93 -0.42 0.03 15 22 H 0.07 0.44 8.10 -51.93 -0.42 0.02 15 23 H 0.13 1.14 8.06 -52.49 -0.42 0.71 15 24 H 0.14 1.74 8.06 -52.49 -0.42 1.31 15 25 H 0.06 1.32 8.04 -51.93 -0.42 0.90 15 26 H 0.07 1.49 8.14 -51.93 -0.42 1.07 15 27 H 0.38 8.25 8.44 -40.82 -0.34 7.90 15 28 H 0.27 7.36 8.29 -40.82 -0.34 7.02 15 29 H 0.15 1.59 8.06 -52.49 -0.42 1.16 15 LS Contribution 264.11 15.07 3.98 3.98 Total: -1.00 -35.34 264.11 -6.31 -41.65 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -3.26 Total: 4.85 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -2.29 Total: 2.32 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.21 Total: -49.13 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.08 Total: -19.13 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -35.34 -6.31 -41.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306987765.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.303 kcal (2) G-P(sol) polarization free energy of solvation -35.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds