Wall clock time and date at job start Sun Mar 29 2020 22:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38669 * 120.41888 * 2 1 4 4 C 1.38631 * 118.42236 * 180.02562 * 3 2 1 5 5 C 1.38228 * 119.16061 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.62125 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.46700 * 94.99978 * 6 5 4 8 8 C 1.34784 * 119.99893 * 180.02562 * 7 6 5 9 9 O 1.21682 * 119.99954 * 359.97438 * 8 7 6 10 10 C 1.46368 * 119.99916 * 179.72943 * 8 7 6 11 11 H 1.07998 * 120.00437 * 359.97438 * 10 8 7 12 12 C 1.40055 * 119.99853 * 179.97438 * 10 8 7 13 13 N 1.30662 * 119.99894 * 359.97438 * 12 10 8 14 14 Si 1.86805 * 119.99877 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47029 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47165 * 120.00059 * 14 12 10 17 17 H 1.48495 * 109.46978 * 240.00192 * 14 12 10 18 18 N 1.31858 * 120.76179 * 0.25928 * 5 4 3 19 19 C 1.31889 * 121.72667 * 359.47039 * 18 5 4 20 20 H 1.09004 * 109.46804 * 90.00361 * 1 2 3 21 21 H 1.08999 * 109.47031 * 209.99980 * 1 2 3 22 22 H 1.08995 * 109.47273 * 330.00235 * 1 2 3 23 23 H 1.07999 * 120.78742 * 359.97438 * 3 2 1 24 24 H 1.07994 * 120.42201 * 180.02562 * 4 3 2 25 25 H 1.08998 * 109.46743 * 335.00454 * 6 5 4 26 26 H 1.08994 * 109.47542 * 215.00313 * 6 5 4 27 27 H 0.97005 * 120.00261 * 0.02562 * 7 6 5 28 28 H 0.97000 * 120.00244 * 179.97438 * 13 12 10 29 29 H 1.07997 * 119.62032 * 180.27022 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1475 -0.0005 5 6 4.2256 -0.0823 -0.0005 6 6 5.7312 -0.1469 -0.0017 7 7 6.2150 -0.2875 1.3740 8 6 7.5382 -0.3652 1.6184 9 8 8.3309 -0.3189 0.6964 10 6 8.0217 -0.4997 2.9933 11 1 7.3183 -0.5363 3.8120 12 6 9.3967 -0.5809 3.2473 13 7 10.2477 -0.5371 2.2568 14 14 10.0138 -0.7519 5.0021 15 1 8.8573 -0.7768 5.9334 16 1 10.7844 -2.0143 5.1351 17 1 10.8904 0.4002 5.3330 18 7 3.5255 -1.1996 -0.0051 19 6 2.2066 -1.1917 0.0005 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6889 2.1423 -0.0004 24 1 4.1735 2.0591 -0.0001 25 1 6.1337 0.7679 -0.4366 26 1 6.0577 -1.0037 -0.5910 27 1 5.5830 -0.3248 2.1089 28 1 11.1999 -0.5930 2.4326 29 1 1.6672 -2.1273 0.0009 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306987765.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:46 Heat of formation + Delta-G solvation = -40.980926 kcal Electronic energy + Delta-G solvation = -13879.353618 eV Core-core repulsion = 11379.827348 eV Total energy + Delta-G solvation = -2499.526270 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.31831 -39.31844 -35.85512 -34.64292 -33.99117 -32.81314 -29.84737 -28.09213 -25.86003 -24.39035 -22.50873 -21.73645 -19.45951 -17.70014 -17.56803 -17.09137 -16.22281 -16.04213 -15.74463 -15.20825 -15.04839 -14.38628 -14.07756 -13.73734 -13.49605 -13.30555 -13.14300 -13.07202 -12.73797 -12.66640 -12.36387 -11.98219 -10.96175 -10.75167 -10.39298 -10.07802 -9.66790 -9.55952 -8.31062 -6.88493 0.04964 0.34764 1.39789 1.40329 1.58642 2.24081 2.44455 2.66584 3.19920 3.37916 3.58293 3.77140 3.93885 4.05243 4.08107 4.40184 4.59291 4.70820 4.76268 4.88007 4.92890 5.18460 5.22870 5.30158 5.35525 5.78652 5.83201 6.11589 6.22212 6.84091 7.04392 7.46905 8.44362 8.64628 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.055925 B = 0.005467 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.549936 B = 5120.020520 C = 5325.470220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.132 4.132 3 C -0.076 4.076 4 C -0.154 4.154 5 C 0.093 3.907 6 C 0.187 3.813 7 N -0.747 5.747 8 C 0.538 3.462 9 O -0.631 6.631 10 C -0.571 4.571 11 H 0.086 0.914 12 C 0.027 3.973 13 N -0.821 5.821 14 Si 1.002 2.998 15 H -0.248 1.248 16 H -0.268 1.268 17 H -0.265 1.265 18 N -0.504 5.504 19 C 0.083 3.917 20 H 0.086 0.914 21 H 0.081 0.919 22 H 0.083 0.917 23 H 0.170 0.830 24 H 0.145 0.855 25 H 0.060 0.940 26 H 0.037 0.963 27 H 0.391 0.609 28 H 0.276 0.724 29 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.536 3.269 -0.430 19.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.134 4.134 3 C -0.101 4.101 4 C -0.175 4.175 5 C -0.044 4.044 6 C 0.062 3.938 7 N -0.401 5.401 8 C 0.343 3.657 9 O -0.518 6.518 10 C -0.608 4.608 11 H 0.104 0.896 12 C -0.188 4.188 13 N -0.451 5.451 14 Si 0.821 3.179 15 H -0.171 1.171 16 H -0.193 1.193 17 H -0.190 1.190 18 N -0.214 5.214 19 C -0.075 4.075 20 H 0.104 0.896 21 H 0.100 0.900 22 H 0.102 0.898 23 H 0.187 0.813 24 H 0.162 0.838 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.224 0.776 28 H 0.086 0.914 29 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -18.340 2.506 -1.208 18.550 hybrid contribution 0.101 0.527 0.584 0.793 sum -18.239 3.034 -0.624 18.500 Atomic orbital electron populations 1.20793 0.87172 1.04464 1.03736 1.21382 0.99565 0.93383 0.99038 1.21884 0.92767 0.99906 0.95576 1.22162 0.96519 0.98282 1.00515 1.21020 0.94879 0.89860 0.98607 1.19626 0.87971 1.00227 0.85982 1.45785 1.07237 1.80569 1.06512 1.18661 0.80194 0.76191 0.90656 1.90547 1.55869 1.57541 1.47856 1.21421 0.93457 1.54229 0.91678 0.89599 1.27027 0.96504 0.91265 1.04002 1.70189 1.03286 1.36278 1.35305 0.84912 0.78861 0.78628 0.75486 1.17089 1.19262 1.19014 1.67415 1.10005 1.31841 1.12111 1.23175 0.88713 0.99502 0.96091 0.89560 0.90043 0.89803 0.81282 0.83759 0.92153 0.94417 0.77617 0.91412 0.80676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 10.04 71.24 0.72 -0.37 15 2 C -0.13 -2.52 5.90 -19.77 -0.12 -2.64 15 3 C -0.08 -1.51 9.86 22.47 0.22 -1.29 15 4 C -0.15 -4.19 9.72 22.36 0.22 -3.97 15 5 C 0.09 3.24 6.15 42.55 0.26 3.50 15 6 C 0.19 8.20 5.98 85.63 0.51 8.71 15 7 N -0.75 -36.85 5.54 -471.16 -2.61 -39.47 15 8 C 0.54 32.94 7.75 86.36 0.67 33.61 15 9 O -0.63 -44.07 15.02 -4.29 -0.06 -44.14 15 10 C -0.57 -33.69 9.54 24.83 0.24 -33.45 15 11 H 0.09 4.58 7.85 -2.91 -0.02 4.55 15 12 C 0.03 1.55 5.50 85.31 0.47 2.02 15 13 N -0.82 -51.48 11.83 21.84 0.26 -51.22 15 14 Si 1.00 41.89 29.56 68.60 2.03 43.91 15 15 H -0.25 -9.61 7.11 99.48 0.71 -8.90 15 16 H -0.27 -10.76 7.11 99.48 0.71 -10.05 15 17 H -0.27 -10.55 7.11 99.48 0.71 -9.85 15 18 N -0.50 -17.24 10.27 -183.88 -1.89 -19.13 15 19 C 0.08 2.06 10.86 84.67 0.92 2.98 15 20 H 0.09 0.71 8.14 -2.38 -0.02 0.70 15 21 H 0.08 0.70 8.09 -2.39 -0.02 0.68 15 22 H 0.08 0.65 8.10 -2.39 -0.02 0.63 15 23 H 0.17 2.10 8.06 -2.91 -0.02 2.07 15 24 H 0.14 3.56 8.06 -2.91 -0.02 3.54 15 25 H 0.06 2.64 8.04 -2.39 -0.02 2.62 15 26 H 0.04 1.83 8.14 -2.39 -0.02 1.81 15 27 H 0.39 17.40 8.44 -92.70 -0.78 16.61 15 28 H 0.28 15.53 8.29 -92.71 -0.77 14.76 15 29 H 0.18 3.28 8.06 -2.91 -0.02 3.25 15 Total: -1.00 -80.71 264.11 2.21 -78.51 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.38 Total: 22.43 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 4.11 Total: 9.11 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -4.24 Total: -109.82 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -0.06 Total: -44.14 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -80.71 2.21 -78.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306987765.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.526 kcal (2) G-P(sol) polarization free energy of solvation -80.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds