Wall clock time and date at job start Sun Mar 29 2020 21:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38394 * 119.92310 * 2 1 4 4 C 1.38348 * 120.30278 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.92730 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.47070 * 89.99781 * 5 4 3 7 7 H 1.08007 * 119.99771 * 0.02562 * 6 5 4 8 8 C 1.37869 * 119.99922 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99992 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 120.00339 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47498 * 89.99407 * 10 8 6 12 12 H 1.48499 * 109.47191 * 209.99671 * 10 8 6 13 13 H 1.48502 * 109.46846 * 329.99562 * 10 8 6 14 14 C 1.37967 * 120.14879 * 359.69803 * 4 3 2 15 15 C 1.39611 * 119.84762 * 0.55687 * 14 4 3 16 16 C 1.47723 * 120.15083 * 179.74399 * 15 14 4 17 17 O 1.21477 * 120.00159 * 359.72197 * 16 15 14 18 18 O 1.34711 * 120.00256 * 179.72198 * 16 15 14 19 19 C 1.37926 * 119.92774 * 180.02562 * 2 1 3 20 20 H 1.08995 * 109.47358 * 269.97797 * 1 2 3 21 21 H 1.09003 * 109.47190 * 29.98035 * 1 2 3 22 22 H 1.09004 * 109.46922 * 149.97546 * 1 2 3 23 23 H 1.07993 * 119.85034 * 0.02562 * 3 2 1 24 24 H 1.08998 * 109.47128 * 210.00076 * 5 4 3 25 25 H 1.08997 * 109.46931 * 330.00525 * 5 4 3 26 26 H 0.97000 * 119.99989 * 180.02562 * 9 8 6 27 27 H 1.08003 * 120.07996 * 180.29950 * 14 4 3 28 28 H 0.96700 * 117.00324 * 180.02562 * 18 16 15 29 29 H 1.07997 * 120.06936 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1995 0.0000 4 6 3.5808 1.2086 -0.0005 5 6 4.3239 2.5196 -0.0011 6 6 4.5721 2.9570 1.4195 7 1 4.2267 2.3463 2.2407 8 6 5.2412 4.1360 1.6709 9 7 5.4582 4.5174 2.9107 10 14 5.8393 5.1917 0.2508 11 1 4.7800 6.1622 -0.1251 12 1 7.0618 5.9277 0.6617 13 1 6.1516 4.3243 -0.9135 14 6 4.2816 0.0202 0.0052 15 6 3.5915 -1.1934 -0.0002 16 6 4.3352 -2.4698 0.0002 17 8 5.5500 -2.4650 0.0001 18 8 3.6663 -3.6391 0.0007 19 6 2.1951 -1.1953 -0.0005 20 1 -0.3634 -0.0004 1.0276 21 1 -0.3634 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5142 23 1 1.6537 2.1326 0.0004 24 1 5.2771 2.3967 -0.5153 25 1 3.7286 3.2745 -0.5148 26 1 5.9286 5.3471 3.0876 27 1 5.3616 0.0287 0.0097 28 1 4.1962 -4.4480 0.0013 29 1 1.6550 -2.1306 -0.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307022823.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:29 Heat of formation + Delta-G solvation = -105.657698 kcal Electronic energy + Delta-G solvation = -14077.415131 eV Core-core repulsion = 11542.791515 eV Total energy + Delta-G solvation = -2534.623616 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.45177 -39.93282 -37.11377 -35.64764 -33.95322 -33.18789 -29.75128 -27.75149 -25.72462 -24.94896 -21.74094 -21.33280 -19.00453 -18.97646 -18.00308 -16.92148 -16.68070 -16.39379 -16.26162 -15.15207 -14.58024 -14.54859 -14.19067 -13.96117 -13.64096 -13.28335 -12.95572 -12.76805 -12.59784 -12.50878 -12.37164 -11.94365 -11.73805 -11.65888 -11.50672 -10.80334 -9.81506 -9.49407 -8.31715 -6.37604 -0.27559 0.44811 1.35688 1.38694 1.50103 1.53746 2.03425 2.34300 2.81698 3.02809 3.81652 3.93221 4.10891 4.24877 4.39903 4.51405 4.67932 4.83227 4.93068 4.97306 5.06885 5.14195 5.27904 5.31931 5.53743 5.54510 5.58358 5.80843 5.97367 6.23244 6.68330 6.95865 7.26162 8.84889 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.028832 B = 0.007875 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.908849 B = 3554.843520 C = 4162.943086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.097 4.097 3 C -0.090 4.090 4 C -0.069 4.069 5 C 0.020 3.980 6 C -0.523 4.523 7 H 0.028 0.972 8 C 0.009 3.991 9 N -0.948 5.948 10 Si 0.951 3.049 11 H -0.259 1.259 12 H -0.284 1.284 13 H -0.248 1.248 14 C -0.082 4.082 15 C -0.141 4.141 16 C 0.537 3.463 17 O -0.553 6.553 18 O -0.496 6.496 19 C -0.071 4.071 20 H 0.078 0.922 21 H 0.076 0.924 22 H 0.089 0.911 23 H 0.135 0.865 24 H 0.028 0.972 25 H 0.041 0.959 26 H 0.268 0.732 27 H 0.112 0.888 28 H 0.433 0.567 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.850 -12.230 -9.246 18.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.097 4.097 3 C -0.108 4.108 4 C -0.069 4.069 5 C -0.017 4.017 6 C -0.561 4.561 7 H 0.046 0.954 8 C -0.188 4.188 9 N -0.589 5.589 10 Si 0.773 3.227 11 H -0.183 1.183 12 H -0.210 1.210 13 H -0.172 1.172 14 C -0.100 4.100 15 C -0.142 4.142 16 C 0.384 3.616 17 O -0.446 6.446 18 O -0.310 6.310 19 C -0.089 4.089 20 H 0.097 0.903 21 H 0.095 0.905 22 H 0.108 0.892 23 H 0.152 0.848 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.130 0.870 28 H 0.295 0.705 29 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.700 -11.768 -9.142 17.781 hybrid contribution 1.303 0.266 0.155 1.339 sum -8.396 -11.502 -8.987 16.839 Atomic orbital electron populations 1.20834 0.87732 1.04354 1.03405 1.20265 0.98336 0.91716 0.99410 1.21463 0.93006 0.99237 0.97107 1.20073 0.94782 0.95030 0.97038 1.18679 0.95791 0.91442 0.95811 1.21150 1.36917 1.06421 0.91644 0.95388 1.25981 0.95370 0.98926 0.98558 1.70058 1.43137 1.24209 1.21451 0.85650 0.78408 0.78957 0.79648 1.18343 1.21003 1.17151 1.21068 0.99968 0.91249 0.97713 1.19084 0.94767 0.89579 1.10800 1.20854 0.84916 0.84925 0.70939 1.90871 1.16732 1.88659 1.48312 1.84497 1.44668 1.16699 1.85104 1.21474 0.91391 0.99478 0.96524 0.90336 0.90496 0.89181 0.84758 0.95397 0.94065 0.92289 0.87006 0.70494 0.81827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 10.01 71.23 0.71 -1.24 15 2 C -0.10 -2.67 5.87 -19.90 -0.12 -2.79 15 3 C -0.09 -3.12 9.35 22.33 0.21 -2.91 15 4 C -0.07 -2.89 5.06 -19.90 -0.10 -2.99 15 5 C 0.02 0.95 4.17 29.10 0.12 1.07 15 6 C -0.52 -30.54 9.65 25.60 0.25 -30.29 15 7 H 0.03 1.83 7.98 -2.91 -0.02 1.80 15 8 C 0.01 0.52 5.47 84.65 0.46 0.98 15 9 N -0.95 -59.79 13.96 21.45 0.30 -59.49 15 10 Si 0.95 43.90 27.47 68.60 1.88 45.79 15 11 H -0.26 -11.22 7.11 99.48 0.71 -10.51 15 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 15 13 H -0.25 -10.71 6.54 99.48 0.65 -10.06 15 14 C -0.08 -3.31 9.25 22.54 0.21 -3.11 15 15 C -0.14 -4.75 5.87 -20.10 -0.12 -4.86 15 16 C 0.54 16.58 8.27 70.33 0.58 17.16 15 17 O -0.55 -20.94 17.13 19.91 0.34 -20.60 15 18 O -0.50 -10.02 12.68 -56.21 -0.71 -10.73 15 19 C -0.07 -1.92 9.27 22.54 0.21 -1.72 15 20 H 0.08 1.36 8.14 -2.39 -0.02 1.34 15 21 H 0.08 1.28 8.08 -2.39 -0.02 1.26 15 22 H 0.09 1.21 8.08 -2.39 -0.02 1.19 15 23 H 0.13 4.33 8.06 -2.91 -0.02 4.31 15 24 H 0.03 1.32 7.14 -2.39 -0.02 1.31 15 25 H 0.04 1.82 7.51 -2.39 -0.02 1.80 15 26 H 0.27 15.69 8.31 -92.71 -0.77 14.92 15 27 H 0.11 4.90 7.65 -2.91 -0.02 4.88 15 28 H 0.43 4.42 9.11 -74.06 -0.67 3.74 15 29 H 0.16 3.29 7.61 -2.91 -0.02 3.26 15 Total: -1.00 -73.41 261.91 4.66 -68.75 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 0.44 Total: 7.00 kcal Atomic # 6 Polarization: -33.12 SS G_CDS: 2.42 Total: -30.71 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 0.30 Total: -59.49 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.37 Total: -31.33 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.88 Total: 45.79 kcal Total: -73.41 4.66 -68.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307022823.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.912 kcal (2) G-P(sol) polarization free energy of solvation -73.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds