Wall clock time and date at job start Sun Mar 29 2020 22:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00097 * 2 1 4 4 H 1.48501 * 109.47163 * 240.00029 * 3 2 1 5 5 H 1.48496 * 109.46929 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46961 * 119.99697 * 3 2 1 7 7 C 1.37883 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99215 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00101 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46747 * 179.97438 * 9 7 2 11 11 N 1.28384 * 119.16672 * 95.00289 * 10 9 7 12 12 C 1.30406 * 122.45053 * 179.97438 * 11 10 9 13 13 C 1.50698 * 119.76993 * 179.97438 * 12 11 10 14 14 C 1.53004 * 117.49680 * 63.75260 * 13 12 11 15 15 C 1.53000 * 117.50020 * 355.09157 * 13 12 11 16 16 C 1.40478 * 120.46408 * 0.02562 * 12 11 10 17 17 C 1.36597 * 118.31251 * 359.97438 * 16 12 11 18 18 C 1.34669 * 119.16961 * 274.72467 * 10 9 7 19 19 O 1.22061 * 120.34986 * 0.03421 * 18 10 9 20 20 H 0.96998 * 119.99728 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47015 * 60.00010 * 9 7 2 22 22 H 1.08998 * 109.47238 * 300.00034 * 9 7 2 23 23 H 1.09000 * 115.55174 * 209.41482 * 13 12 11 24 24 H 1.08997 * 117.49835 * 359.97438 * 14 13 12 25 25 H 1.08994 * 117.49898 * 145.01998 * 14 13 12 26 26 H 1.08994 * 117.50146 * 214.97816 * 15 13 12 27 27 H 1.09000 * 117.49649 * 359.97216 * 15 13 12 28 28 H 1.07996 * 120.84151 * 179.97438 * 16 12 11 29 29 H 1.08005 * 121.09028 * 179.97438 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 7 2.5353 -4.1518 1.1173 12 6 3.3761 -5.1459 1.1917 13 6 3.7239 -5.7328 2.5354 14 6 2.5983 -6.4021 3.3267 15 6 3.1491 -5.0465 3.7762 16 6 3.9606 -5.6729 0.0281 17 6 3.6247 -5.1180 -1.1741 18 6 2.7032 -4.0486 -1.1714 19 8 2.3672 -3.5213 -2.2197 20 1 -0.4850 0.8401 0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 4.7214 -6.1648 2.6158 24 1 1.6062 -6.4176 2.8755 25 1 2.8554 -7.2741 3.9279 26 1 3.7683 -5.0272 4.6730 27 1 2.5198 -4.1702 3.6206 28 1 4.6579 -6.4957 0.0826 29 1 4.0475 -5.4877 -2.0966 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589583732.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:09 Heat of formation + Delta-G solvation = 49.798209 kcal Electronic energy + Delta-G solvation = -14508.754309 eV Core-core repulsion = 12013.164517 eV Total energy + Delta-G solvation = -2495.589791 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.27134 -37.73414 -36.26636 -34.29547 -32.65177 -30.45874 -28.00913 -25.11458 -23.85700 -22.37962 -21.99349 -21.14417 -17.50690 -16.94540 -16.55771 -15.88645 -15.33864 -14.96074 -14.56102 -13.99272 -13.35487 -12.92364 -12.48928 -12.32782 -11.83829 -11.56544 -11.33403 -11.22549 -10.85294 -10.69675 -10.60795 -10.29517 -10.13282 -9.91948 -9.37736 -8.88014 -8.56592 -7.59530 -6.19167 -4.24916 1.14860 2.16228 3.18805 3.28664 3.31538 3.37268 3.87043 4.25565 4.36951 4.53035 4.82809 5.01192 5.12856 5.17109 5.19795 5.37550 5.51056 5.75519 5.89947 6.15996 6.20035 6.31874 6.42191 6.51009 6.86392 7.08961 7.17429 7.73619 7.93160 8.43456 8.72842 9.04410 9.39074 10.89904 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.028973 B = 0.008926 C = 0.007617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.189877 B = 3136.103498 C = 3675.056650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.241 3.759 10 N -0.308 5.308 11 N -0.191 5.191 12 C 0.037 3.963 13 C -0.088 4.088 14 C -0.169 4.169 15 C -0.164 4.164 16 C -0.063 4.063 17 C -0.206 4.206 18 C 0.467 3.533 19 O -0.531 6.531 20 H 0.268 0.732 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.120 0.880 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.140 0.860 29 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.905 -12.056 5.887 15.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.569 4.569 8 H 0.078 0.922 9 C 0.125 3.875 10 N -0.129 5.129 11 N -0.018 5.018 12 C -0.130 4.130 13 C -0.108 4.108 14 C -0.207 4.207 15 C -0.201 4.201 16 C -0.087 4.087 17 C -0.237 4.237 18 C 0.265 3.735 19 O -0.409 6.409 20 H 0.078 0.922 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.138 0.862 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.112 0.888 27 H 0.128 0.872 28 H 0.158 0.842 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.951 -10.998 5.728 13.754 hybrid contribution 0.990 0.431 -0.668 1.269 sum 6.941 -10.567 5.060 13.618 Atomic orbital electron populations 1.69910 1.06011 1.27694 1.49270 1.24877 0.94991 0.99338 0.94410 0.86395 0.79450 0.81851 0.78859 1.19954 1.20872 1.19979 1.21087 0.93321 0.89616 1.52901 0.92231 1.19987 0.86695 0.80411 1.00415 1.47558 1.35733 1.27993 1.01579 1.70646 1.10871 1.06498 1.13826 1.20635 1.00369 0.96984 0.95024 1.20496 0.98263 1.04445 0.87571 1.23014 0.98148 0.96483 1.03046 1.23004 1.03626 0.97060 0.96448 1.21968 0.96862 0.98029 0.91863 1.22693 1.02076 0.99186 0.99744 1.17990 0.84504 0.86011 0.84972 1.90953 1.61190 1.59183 1.29597 0.92233 0.91890 0.92406 0.86214 0.88750 0.88656 0.88758 0.87178 0.84238 0.83011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.44 15 2 C 0.07 1.92 5.46 -17.82 -0.10 1.82 15 3 Si 0.91 21.97 29.54 -169.99 -5.02 16.95 15 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 15 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.53 -15.39 9.34 -34.44 -0.32 -15.71 15 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 15 9 C 0.24 6.52 5.26 -5.19 -0.03 6.49 15 10 N -0.31 -7.28 3.22 -64.52 -0.21 -7.49 15 11 N -0.19 -3.90 9.83 33.73 0.33 -3.57 15 12 C 0.04 0.59 6.55 -82.36 -0.54 0.05 15 13 C -0.09 -1.07 6.04 -91.77 -0.55 -1.63 15 14 C -0.17 -1.87 10.24 -26.69 -0.27 -2.14 15 15 C -0.16 -2.02 10.03 -26.69 -0.27 -2.29 15 16 C -0.06 -0.91 9.87 -39.33 -0.39 -1.29 15 17 C -0.21 -3.57 10.13 -39.06 -0.40 -3.97 15 18 C 0.47 10.80 7.42 -15.20 -0.11 10.68 15 19 O -0.53 -14.26 16.73 4.86 0.08 -14.18 15 20 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 21 H 0.06 1.83 7.52 -51.93 -0.39 1.44 15 22 H 0.06 1.57 8.12 -51.93 -0.42 1.14 15 23 H 0.12 1.12 8.14 -51.93 -0.42 0.70 15 24 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15 25 H 0.10 0.81 8.14 -51.93 -0.42 0.39 15 26 H 0.09 0.95 8.14 -51.93 -0.42 0.53 15 27 H 0.11 1.66 7.56 -51.93 -0.39 1.27 15 28 H 0.14 1.35 8.06 -52.49 -0.42 0.93 15 29 H 0.15 2.20 8.06 -52.48 -0.42 1.77 15 LS Contribution 262.26 15.07 3.95 3.95 Total: -1.00 -32.65 262.26 -6.39 -39.04 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -3.29 Total: -1.28 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.98 Total: -7.98 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.86 Total: -36.50 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.08 Total: -14.18 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.65 -6.39 -39.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589583732.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.837 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds