Wall clock time and date at job start Sun Mar 29 2020 22:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00097 * 2 1 4 4 H 1.48501 * 109.47163 * 240.00029 * 3 2 1 5 5 H 1.48496 * 109.46929 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46961 * 119.99697 * 3 2 1 7 7 C 1.37883 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99215 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00101 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46747 * 179.97438 * 9 7 2 11 11 N 1.28384 * 119.16672 * 95.00289 * 10 9 7 12 12 C 1.30406 * 122.45053 * 179.97438 * 11 10 9 13 13 C 1.50698 * 119.76993 * 179.97438 * 12 11 10 14 14 C 1.53004 * 117.49680 * 63.75260 * 13 12 11 15 15 C 1.53000 * 117.50020 * 355.09157 * 13 12 11 16 16 C 1.40478 * 120.46408 * 0.02562 * 12 11 10 17 17 C 1.36597 * 118.31251 * 359.97438 * 16 12 11 18 18 C 1.34669 * 119.16961 * 274.72467 * 10 9 7 19 19 O 1.22061 * 120.34986 * 0.03421 * 18 10 9 20 20 H 0.96998 * 119.99728 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47015 * 60.00010 * 9 7 2 22 22 H 1.08998 * 109.47238 * 300.00034 * 9 7 2 23 23 H 1.09000 * 115.55174 * 209.41482 * 13 12 11 24 24 H 1.08997 * 117.49835 * 359.97438 * 14 13 12 25 25 H 1.08994 * 117.49898 * 145.01998 * 14 13 12 26 26 H 1.08994 * 117.50146 * 214.97816 * 15 13 12 27 27 H 1.09000 * 117.49649 * 359.97216 * 15 13 12 28 28 H 1.07996 * 120.84151 * 179.97438 * 16 12 11 29 29 H 1.08005 * 121.09028 * 179.97438 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 7 2.5353 -4.1518 1.1173 12 6 3.3761 -5.1459 1.1917 13 6 3.7239 -5.7328 2.5354 14 6 2.5983 -6.4021 3.3267 15 6 3.1491 -5.0465 3.7762 16 6 3.9606 -5.6729 0.0281 17 6 3.6247 -5.1180 -1.1741 18 6 2.7032 -4.0486 -1.1714 19 8 2.3672 -3.5213 -2.2197 20 1 -0.4850 0.8401 0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 4.7214 -6.1648 2.6158 24 1 1.6062 -6.4176 2.8755 25 1 2.8554 -7.2741 3.9279 26 1 3.7683 -5.0272 4.6730 27 1 2.5198 -4.1702 3.6206 28 1 4.6579 -6.4957 0.0826 29 1 4.0475 -5.4877 -2.0966 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589583732.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:09 Heat of formation + Delta-G solvation = 27.303701 kcal Electronic energy + Delta-G solvation = -14509.729744 eV Core-core repulsion = 12013.164517 eV Total energy + Delta-G solvation = -2496.565226 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.85070 -39.15183 -37.70182 -35.96690 -34.58600 -32.08985 -29.92043 -26.78956 -25.54045 -24.02110 -23.05356 -22.33072 -19.13355 -18.95184 -18.15128 -17.35951 -17.00276 -16.70249 -15.88942 -15.48377 -14.65193 -14.49531 -14.36095 -14.01838 -13.79436 -13.20714 -12.86297 -12.73237 -12.44932 -12.29496 -12.20708 -12.09844 -11.42110 -11.15708 -10.94800 -10.77617 -10.50765 -9.29235 -8.38373 -6.54765 -0.24264 0.70186 1.31595 1.36869 1.43378 1.55388 2.29178 2.49254 2.92483 3.12729 3.26039 3.61455 3.95831 4.00511 4.21619 4.24135 4.42912 4.75560 4.77685 4.85301 4.91510 4.93090 5.06920 5.18555 5.32858 5.39366 5.45103 5.52395 5.74382 6.47022 6.74574 7.13823 7.48678 8.70725 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.028973 B = 0.008926 C = 0.007617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.189877 B = 3136.103498 C = 3675.056650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.016 3.984 3 Si 0.978 3.022 4 H -0.275 1.275 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.553 4.553 8 H 0.047 0.953 9 C 0.261 3.739 10 N -0.331 5.331 11 N -0.243 5.243 12 C 0.061 3.939 13 C -0.093 4.093 14 C -0.150 4.150 15 C -0.178 4.178 16 C -0.032 4.032 17 C -0.211 4.211 18 C 0.445 3.555 19 O -0.595 6.595 20 H 0.274 0.726 21 H 0.024 0.976 22 H 0.042 0.958 23 H 0.169 0.831 24 H 0.072 0.928 25 H 0.135 0.865 26 H 0.123 0.877 27 H 0.070 0.930 28 H 0.209 0.791 29 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.807 -14.088 7.493 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.800 3.200 4 H -0.200 1.200 5 H -0.192 1.192 6 H -0.186 1.186 7 C -0.591 4.591 8 H 0.066 0.934 9 C 0.142 3.858 10 N -0.149 5.149 11 N -0.068 5.068 12 C -0.107 4.107 13 C -0.112 4.112 14 C -0.188 4.188 15 C -0.215 4.215 16 C -0.056 4.056 17 C -0.240 4.240 18 C 0.246 3.754 19 O -0.479 6.479 20 H 0.083 0.917 21 H 0.042 0.958 22 H 0.060 0.940 23 H 0.187 0.813 24 H 0.091 0.909 25 H 0.153 0.847 26 H 0.141 0.859 27 H 0.089 0.911 28 H 0.226 0.774 29 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 8.850 -13.052 7.372 17.408 hybrid contribution 0.138 0.858 -1.030 1.348 sum 8.987 -12.194 6.342 16.422 Atomic orbital electron populations 1.70016 1.07500 1.29003 1.49374 1.25857 0.95993 1.03101 0.93461 0.85321 0.78341 0.77215 0.79084 1.20010 1.19227 1.18593 1.21284 0.92861 0.91150 1.53797 0.93448 1.19311 0.87097 0.81775 0.97616 1.47085 1.36596 1.28364 1.02848 1.70679 1.14108 1.09326 1.12644 1.21791 0.96734 0.94095 0.98113 1.20936 1.00882 1.04546 0.84849 1.23080 0.96639 0.97008 1.02108 1.23011 1.04160 0.96545 0.97829 1.22610 0.95674 0.97969 0.89305 1.22873 1.00941 0.97538 1.02666 1.18973 0.85254 0.87239 0.83966 1.90896 1.63868 1.61760 1.31338 0.91674 0.95766 0.93997 0.81322 0.90892 0.84742 0.85884 0.91105 0.77416 0.79924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.32 13.29 21.45 0.28 -56.04 15 2 C 0.02 0.97 5.46 84.66 0.46 1.44 15 3 Si 0.98 45.97 29.54 68.60 2.03 47.99 15 4 H -0.27 -12.88 7.11 99.48 0.71 -12.17 15 5 H -0.27 -11.83 7.11 99.48 0.71 -11.13 15 6 H -0.26 -11.66 7.11 99.48 0.71 -10.96 15 7 C -0.55 -33.91 9.34 25.60 0.24 -33.67 15 8 H 0.05 2.93 7.81 -2.91 -0.02 2.91 15 9 C 0.26 15.26 5.26 85.63 0.45 15.71 15 10 N -0.33 -16.52 3.22 -476.15 -1.53 -18.05 15 11 N -0.24 -10.14 9.83 -47.21 -0.46 -10.60 15 12 C 0.06 1.82 6.55 43.32 0.28 2.10 15 13 C -0.09 -1.83 6.04 -11.54 -0.07 -1.90 15 14 C -0.15 -2.74 10.24 30.62 0.31 -2.43 15 15 C -0.18 -3.94 10.03 30.62 0.31 -3.63 15 16 C -0.03 -0.78 9.87 22.43 0.22 -0.55 15 17 C -0.21 -6.89 10.13 22.60 0.23 -6.66 15 18 C 0.44 21.39 7.42 84.98 0.63 22.02 15 19 O -0.59 -34.17 16.73 -5.51 -0.09 -34.26 15 20 H 0.27 15.53 8.31 -92.71 -0.77 14.76 15 21 H 0.02 1.57 7.52 -2.39 -0.02 1.55 15 22 H 0.04 2.49 8.12 -2.39 -0.02 2.48 15 23 H 0.17 1.83 8.14 -2.39 -0.02 1.81 15 24 H 0.07 1.68 8.14 -2.39 -0.02 1.66 15 25 H 0.13 1.49 8.14 -2.39 -0.02 1.48 15 26 H 0.12 2.01 8.14 -2.39 -0.02 1.99 15 27 H 0.07 2.17 7.56 -2.39 -0.02 2.15 15 28 H 0.21 2.26 8.06 -2.91 -0.02 2.24 15 29 H 0.18 4.75 8.06 -2.91 -0.02 4.72 15 Total: -1.00 -79.49 262.26 4.44 -75.05 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: 1.15 Total: 3.49 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 3.07 Total: -7.58 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -1.71 Total: -84.69 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.09 Total: -34.26 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -79.49 4.44 -75.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589583732.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.351 kcal (2) G-P(sol) polarization free energy of solvation -79.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds