Wall clock time and date at job start Sun Mar 29 2020 21:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47022 * 85.68353 * 3 2 1 5 5 C 1.46901 * 110.99711 * 189.99675 * 4 3 2 6 6 C 1.53000 * 109.46902 * 163.76399 * 5 4 3 7 7 C 1.50700 * 115.55380 * 304.19087 * 6 5 4 8 8 H 1.08002 * 120.00022 * 95.17891 * 7 6 5 9 9 C 1.37878 * 119.99869 * 275.18713 * 7 6 5 10 10 N 1.31520 * 119.99766 * 5.71811 * 9 7 6 11 11 Si 1.86802 * 120.00249 * 185.71472 * 9 7 6 12 12 H 1.48500 * 109.46934 * 270.00511 * 11 9 7 13 13 H 1.48504 * 109.46678 * 29.99855 * 11 9 7 14 14 H 1.48489 * 109.47312 * 149.99925 * 11 9 7 15 15 C 1.53003 * 117.50089 * 89.85584 * 6 5 4 16 16 C 1.52997 * 117.50121 * 158.51699 * 6 5 4 17 17 C 1.46908 * 110.99637 * 66.04950 * 4 3 2 18 18 C 1.52994 * 117.49814 * 0.16265 * 17 4 3 19 19 C 1.52999 * 117.49612 * 291.53786 * 17 4 3 20 20 H 4.40878 * 5.52169 * 180.02562 * 4 1 2 21 21 H 1.09005 * 109.46959 * 325.68869 * 3 2 1 22 22 H 1.08996 * 109.46970 * 205.68986 * 3 2 1 23 23 H 1.08997 * 109.46998 * 43.76681 * 5 4 3 24 24 H 1.08996 * 109.47735 * 283.76277 * 5 4 3 25 25 H 0.96996 * 119.99782 * 174.99014 * 10 9 7 26 26 H 1.08995 * 117.50447 * 215.00242 * 15 6 5 27 27 H 1.09006 * 117.49395 * 0.03131 * 15 6 5 28 28 H 1.09001 * 117.50133 * 359.97438 * 16 6 5 29 29 H 1.09003 * 117.50272 * 144.97093 * 16 6 5 30 30 H 1.08998 * 115.54592 * 145.87337 * 17 4 3 31 31 H 1.09002 * 117.50241 * 359.97438 * 18 17 4 32 32 H 1.09003 * 117.49526 * 145.02445 * 18 17 4 33 33 H 1.08995 * 117.50119 * 214.98123 * 19 17 4 34 34 H 1.09001 * 117.49944 * 0.02562 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1356 -0.1034 -1.3811 5 6 4.5846 -0.3436 -1.4091 6 6 4.9920 -0.8430 -2.7967 7 6 4.2682 -2.0718 -3.2837 8 1 3.3985 -1.9711 -3.9161 9 6 4.7162 -3.3245 -2.9219 10 7 5.7045 -3.4466 -2.0628 11 14 3.9195 -4.8483 -3.6517 12 1 2.7883 -5.2763 -2.7901 13 1 3.4148 -4.5389 -5.0137 14 1 4.9219 -5.9409 -3.7317 15 6 5.3814 0.2070 -3.8393 16 6 6.4572 -0.6780 -3.2049 17 6 2.7856 1.0951 -2.1553 18 6 2.0120 2.2008 -1.4345 19 6 1.3064 1.3246 -2.4716 20 1 -1.0500 0.0002 0.0000 21 1 3.0097 -0.8481 0.5793 22 1 3.0088 0.9269 0.4455 23 1 4.8429 -1.0945 -0.6625 24 1 5.1113 0.5847 -1.1880 25 1 5.9717 -4.3260 -1.7527 26 1 5.1141 0.0091 -4.8772 27 1 5.3478 1.2536 -3.5363 28 1 7.1310 -0.2133 -2.4851 29 1 6.8979 -1.4585 -3.8253 30 1 3.5140 1.3981 -2.9074 31 1 1.7623 2.0389 -0.3859 32 1 2.2314 3.2317 -1.7123 33 1 1.0616 1.7791 -3.4315 34 1 0.5929 0.5867 -2.1048 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878434227.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:51 Heat of formation + Delta-G solvation = 126.560369 kcal Electronic energy + Delta-G solvation = -15039.168016 eV Core-core repulsion = 12748.165888 eV Total energy + Delta-G solvation = -2291.002129 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.84392 -36.27096 -33.23612 -32.26582 -31.75177 -27.11912 -25.37072 -23.98319 -21.89945 -21.15671 -20.11619 -18.94718 -17.68804 -16.31897 -15.46316 -15.03593 -14.45223 -14.14253 -13.69170 -13.21155 -12.79954 -12.45204 -11.99126 -11.74535 -11.40247 -10.97059 -10.85675 -10.72612 -10.47546 -10.34496 -10.08045 -9.90687 -9.80733 -9.60740 -9.30066 -8.74331 -8.31310 -8.00990 -7.34522 -5.89374 -3.90173 3.07160 3.20397 3.38773 3.44747 3.48934 4.32396 4.52434 4.61191 4.78097 5.32974 5.36675 5.40804 5.54714 5.58465 5.78117 5.86845 6.00223 6.18299 6.19813 6.29736 6.35102 6.44626 6.50967 6.60964 6.62100 6.77167 6.92493 7.13797 7.49553 7.53814 7.78613 7.92740 8.01490 8.04554 8.60903 9.08240 9.72188 11.20077 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.025851 B = 0.010549 C = 0.008853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.878257 B = 2653.521140 C = 3162.091165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.148 4.148 3 C 0.151 3.849 4 N -0.477 5.477 5 C 0.104 3.896 6 C 0.057 3.943 7 C -0.461 4.461 8 H 0.059 0.941 9 C 0.068 3.932 10 N -0.889 5.889 11 Si 0.887 3.113 12 H -0.282 1.282 13 H -0.275 1.275 14 H -0.289 1.289 15 C -0.218 4.218 16 C -0.158 4.158 17 C 0.038 3.962 18 C -0.231 4.231 19 C -0.180 4.180 20 H 0.212 0.788 21 H 0.097 0.903 22 H 0.053 0.947 23 H 0.081 0.919 24 H 0.007 0.993 25 H 0.257 0.743 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.165 8.079 3.027 10.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.149 4.149 3 C 0.025 3.975 4 N -0.197 5.197 5 C -0.022 4.022 6 C 0.057 3.943 7 C -0.499 4.499 8 H 0.077 0.923 9 C -0.134 4.134 10 N -0.528 5.528 11 Si 0.715 3.285 12 H -0.208 1.208 13 H -0.200 1.200 14 H -0.216 1.216 15 C -0.255 4.255 16 C -0.196 4.196 17 C -0.072 4.072 18 C -0.270 4.270 19 C -0.218 4.218 20 H 0.229 0.771 21 H 0.115 0.885 22 H 0.071 0.929 23 H 0.099 0.901 24 H 0.025 0.975 25 H 0.066 0.934 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.138 0.862 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.185 7.494 2.856 9.550 hybrid contribution -0.261 -0.205 0.031 0.333 sum -5.446 7.289 2.887 9.546 Atomic orbital electron populations 1.24631 0.95692 1.02913 1.01311 1.22940 0.94320 0.98591 0.99041 1.19214 0.84973 1.01217 0.92132 1.61652 1.16304 1.33345 1.08439 1.21738 0.83260 0.96721 1.00516 1.18763 0.93072 0.93588 0.88912 1.20262 1.11396 0.88323 1.29929 0.92318 1.24910 0.94602 0.98547 0.95302 1.69969 1.28124 1.23097 1.31601 0.86677 0.78915 0.83121 0.79793 1.20846 1.20035 1.21550 1.23074 1.08462 0.94473 0.99477 1.22539 0.93199 1.00974 1.02887 1.22754 0.94822 0.89741 0.99860 1.23601 1.08391 0.96305 0.98733 1.23233 0.97127 1.02646 0.98816 0.77065 0.88548 0.92936 0.90071 0.97525 0.93370 0.90520 0.92089 0.92110 0.89975 0.86202 0.88443 0.89830 0.89713 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.33 17.58 29.55 0.52 -2.81 16 2 C -0.15 -2.48 9.37 -37.12 -0.35 -2.83 16 3 C 0.15 2.63 5.04 -6.61 -0.03 2.59 16 4 N -0.48 -9.64 4.38 -230.14 -1.01 -10.65 16 5 C 0.10 2.28 4.84 -3.82 -0.02 2.26 16 6 C 0.06 1.38 1.28 -155.66 -0.20 1.18 16 7 C -0.46 -12.54 8.54 -34.44 -0.29 -12.83 16 8 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 9 C 0.07 1.86 5.39 -17.82 -0.10 1.76 16 10 N -0.89 -25.05 12.92 55.43 0.72 -24.33 16 11 Si 0.89 21.66 29.55 -169.99 -5.02 16.63 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 C -0.22 -4.68 8.63 -26.69 -0.23 -4.91 16 16 C -0.16 -3.66 9.46 -26.69 -0.25 -3.91 16 17 C 0.04 0.69 5.77 -67.71 -0.39 0.30 16 18 C -0.23 -3.55 9.15 -26.73 -0.24 -3.80 16 19 C -0.18 -2.99 9.72 -26.73 -0.26 -3.25 16 20 H 0.21 2.29 7.80 -54.09 -0.42 1.87 16 21 H 0.10 1.67 7.86 -51.93 -0.41 1.26 16 22 H 0.05 0.82 6.93 -51.93 -0.36 0.46 16 23 H 0.08 1.92 7.80 -51.93 -0.41 1.51 16 24 H 0.01 0.13 8.01 -51.93 -0.42 -0.28 16 25 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 26 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 27 H 0.06 1.18 7.14 -51.93 -0.37 0.81 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 30 H 0.12 2.25 5.35 -51.93 -0.28 1.97 16 31 H 0.10 1.49 4.84 -51.93 -0.25 1.24 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.10 1.79 5.15 -51.93 -0.27 1.52 16 LS Contribution 280.67 15.07 4.23 4.23 Total: -1.00 -28.45 280.67 -7.77 -36.22 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -4.84 Total: 4.13 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -1.85 Total: -26.23 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: -0.29 Total: -34.98 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.45 -7.77 -36.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878434227.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.779 kcal (2) G-P(sol) polarization free energy of solvation -28.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds