Wall clock time and date at job start Sun Mar 29 2020 21:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47022 * 85.68353 * 3 2 1 5 5 C 1.46901 * 110.99711 * 189.99675 * 4 3 2 6 6 C 1.53000 * 109.46902 * 163.76399 * 5 4 3 7 7 C 1.50700 * 115.55380 * 304.19087 * 6 5 4 8 8 H 1.08002 * 120.00022 * 95.17891 * 7 6 5 9 9 C 1.37878 * 119.99869 * 275.18713 * 7 6 5 10 10 N 1.31520 * 119.99766 * 5.71811 * 9 7 6 11 11 Si 1.86802 * 120.00249 * 185.71472 * 9 7 6 12 12 H 1.48500 * 109.46934 * 270.00511 * 11 9 7 13 13 H 1.48504 * 109.46678 * 29.99855 * 11 9 7 14 14 H 1.48489 * 109.47312 * 149.99925 * 11 9 7 15 15 C 1.53003 * 117.50089 * 89.85584 * 6 5 4 16 16 C 1.52997 * 117.50121 * 158.51699 * 6 5 4 17 17 C 1.46908 * 110.99637 * 66.04950 * 4 3 2 18 18 C 1.52994 * 117.49814 * 0.16265 * 17 4 3 19 19 C 1.52999 * 117.49612 * 291.53786 * 17 4 3 20 20 H 4.40878 * 5.52169 * 180.02562 * 4 1 2 21 21 H 1.09005 * 109.46959 * 325.68869 * 3 2 1 22 22 H 1.08996 * 109.46970 * 205.68986 * 3 2 1 23 23 H 1.08997 * 109.46998 * 43.76681 * 5 4 3 24 24 H 1.08996 * 109.47735 * 283.76277 * 5 4 3 25 25 H 0.96996 * 119.99782 * 174.99014 * 10 9 7 26 26 H 1.08995 * 117.50447 * 215.00242 * 15 6 5 27 27 H 1.09006 * 117.49395 * 0.03131 * 15 6 5 28 28 H 1.09001 * 117.50133 * 359.97438 * 16 6 5 29 29 H 1.09003 * 117.50272 * 144.97093 * 16 6 5 30 30 H 1.08998 * 115.54592 * 145.87337 * 17 4 3 31 31 H 1.09002 * 117.50241 * 359.97438 * 18 17 4 32 32 H 1.09003 * 117.49526 * 145.02445 * 18 17 4 33 33 H 1.08995 * 117.50119 * 214.98123 * 19 17 4 34 34 H 1.09001 * 117.49944 * 0.02562 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1356 -0.1034 -1.3811 5 6 4.5846 -0.3436 -1.4091 6 6 4.9920 -0.8430 -2.7967 7 6 4.2682 -2.0718 -3.2837 8 1 3.3985 -1.9711 -3.9161 9 6 4.7162 -3.3245 -2.9219 10 7 5.7045 -3.4466 -2.0628 11 14 3.9195 -4.8483 -3.6517 12 1 2.7883 -5.2763 -2.7901 13 1 3.4148 -4.5389 -5.0137 14 1 4.9219 -5.9409 -3.7317 15 6 5.3814 0.2070 -3.8393 16 6 6.4572 -0.6780 -3.2049 17 6 2.7856 1.0951 -2.1553 18 6 2.0120 2.2008 -1.4345 19 6 1.3064 1.3246 -2.4716 20 1 -1.0500 0.0002 0.0000 21 1 3.0097 -0.8481 0.5793 22 1 3.0088 0.9269 0.4455 23 1 4.8429 -1.0945 -0.6625 24 1 5.1113 0.5847 -1.1880 25 1 5.9717 -4.3260 -1.7527 26 1 5.1141 0.0091 -4.8772 27 1 5.3478 1.2536 -3.5363 28 1 7.1310 -0.2133 -2.4851 29 1 6.8979 -1.4585 -3.8253 30 1 3.5140 1.3981 -2.9074 31 1 1.7623 2.0389 -0.3859 32 1 2.2314 3.2317 -1.7123 33 1 1.0616 1.7791 -3.4315 34 1 0.5929 0.5867 -2.1048 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878434227.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:51 Heat of formation + Delta-G solvation = 110.873661 kcal Electronic energy + Delta-G solvation = -15039.848243 eV Core-core repulsion = 12748.165888 eV Total energy + Delta-G solvation = -2291.682355 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.27383 -38.00356 -34.56794 -33.92604 -33.51284 -28.60668 -27.36584 -25.55770 -23.16079 -22.91654 -21.58866 -20.76138 -18.93235 -17.98281 -17.12217 -16.55905 -16.35417 -15.69213 -15.33095 -14.65481 -14.47357 -13.78355 -13.57642 -13.35921 -13.22878 -12.83862 -12.70267 -12.36023 -12.19689 -11.97474 -11.68794 -11.43793 -11.12031 -11.01479 -10.79016 -10.67879 -10.29439 -9.86667 -8.78824 -7.99258 -6.04179 1.42400 1.44167 1.52580 1.83619 1.99967 2.49768 3.01394 3.24856 3.29980 3.59340 3.60860 4.06633 4.21279 4.26097 4.36212 4.42692 4.57425 4.63023 4.75773 4.82409 4.84660 4.91149 5.02627 5.07547 5.19531 5.25060 5.30556 5.37154 5.66892 5.75489 5.90561 6.35274 6.37733 6.62133 6.78427 6.97220 7.59690 9.09055 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.025851 B = 0.010549 C = 0.008853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.878257 B = 2653.521140 C = 3162.091165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.196 4.196 3 C 0.153 3.847 4 N -0.499 5.499 5 C 0.119 3.881 6 C 0.033 3.967 7 C -0.469 4.469 8 H 0.041 0.959 9 C 0.025 3.975 10 N -0.912 5.912 11 Si 0.938 3.062 12 H -0.283 1.283 13 H -0.273 1.273 14 H -0.286 1.286 15 C -0.190 4.190 16 C -0.165 4.165 17 C 0.013 3.987 18 C -0.204 4.204 19 C -0.181 4.181 20 H 0.248 0.752 21 H 0.084 0.916 22 H 0.069 0.931 23 H 0.052 0.948 24 H 0.022 0.978 25 H 0.255 0.745 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.544 9.426 3.053 11.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.196 4.196 3 C 0.027 3.973 4 N -0.221 5.221 5 C -0.009 4.009 6 C 0.032 3.968 7 C -0.507 4.507 8 H 0.060 0.940 9 C -0.174 4.174 10 N -0.552 5.552 11 Si 0.766 3.234 12 H -0.209 1.209 13 H -0.198 1.198 14 H -0.212 1.212 15 C -0.227 4.227 16 C -0.203 4.203 17 C -0.097 4.097 18 C -0.242 4.242 19 C -0.219 4.219 20 H 0.264 0.736 21 H 0.102 0.898 22 H 0.087 0.913 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.131 0.869 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.574 8.851 2.877 11.394 hybrid contribution 0.098 -0.597 0.010 0.605 sum -6.475 8.254 2.886 10.881 Atomic orbital electron populations 1.25484 0.96454 1.00635 0.98903 1.23007 0.94628 1.00732 1.01243 1.19136 0.85933 1.01527 0.90720 1.61541 1.14987 1.35226 1.10305 1.21398 0.84969 0.96362 0.98124 1.18845 0.93229 0.93875 0.90822 1.20427 1.10927 0.89947 1.29413 0.94048 1.25485 0.95307 1.00812 0.95788 1.70057 1.29162 1.23362 1.32587 0.85862 0.78078 0.80438 0.79060 1.20889 1.19823 1.21225 1.23029 1.05830 0.95328 0.98554 1.22463 0.93293 1.01212 1.03308 1.22737 0.95649 0.90524 1.00762 1.23595 1.05656 0.96472 0.98505 1.23279 0.95706 1.02862 1.00024 0.73581 0.89808 0.91295 0.92906 0.96009 0.93553 0.90931 0.89257 0.90746 0.92423 0.86935 0.88209 0.87658 0.88318 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.23 17.58 74.32 1.31 -3.93 16 2 C -0.20 -6.23 9.37 31.13 0.29 -5.94 16 3 C 0.15 5.25 5.04 84.50 0.43 5.67 16 4 N -0.50 -19.99 4.38 -882.02 -3.86 -23.85 16 5 C 0.12 5.19 4.84 86.30 0.42 5.61 16 6 C 0.03 1.59 1.28 -52.93 -0.07 1.52 16 7 C -0.47 -25.83 8.54 25.60 0.22 -25.61 16 8 H 0.04 2.37 7.82 -2.91 -0.02 2.34 16 9 C 0.02 1.37 5.39 84.65 0.46 1.83 16 10 N -0.91 -52.29 12.92 21.45 0.28 -52.01 16 11 Si 0.94 44.94 29.55 68.60 2.03 46.97 16 12 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 13 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 14 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 15 C -0.19 -7.96 8.63 30.62 0.26 -7.70 16 16 C -0.16 -7.63 9.46 30.62 0.29 -7.34 16 17 C 0.01 0.44 5.77 44.91 0.26 0.70 16 18 C -0.20 -5.65 9.15 30.59 0.28 -5.37 16 19 C -0.18 -5.58 9.72 30.60 0.30 -5.28 16 20 H 0.25 4.34 7.80 -4.42 -0.03 4.30 16 21 H 0.08 2.98 7.86 -2.38 -0.02 2.97 16 22 H 0.07 2.07 6.93 -2.39 -0.02 2.05 16 23 H 0.05 2.56 7.80 -2.39 -0.02 2.54 16 24 H 0.02 0.87 8.01 -2.39 -0.02 0.85 16 25 H 0.26 14.14 8.32 -92.71 -0.77 13.37 16 26 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 27 H 0.09 3.22 7.14 -2.38 -0.02 3.21 16 28 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 29 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.11 4.02 5.35 -2.39 -0.01 4.00 16 31 H 0.10 2.76 4.84 -2.39 -0.01 2.75 16 32 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.09 3.07 5.15 -2.39 -0.01 3.06 16 Total: -1.00 -60.66 280.67 3.95 -56.71 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 1.07 Total: 18.02 kcal Atomic # 6 Polarization: -50.28 SS G_CDS: 4.44 Total: -45.84 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -3.58 Total: -75.86 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -60.66 3.95 -56.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878434227.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.579 kcal (2) G-P(sol) polarization free energy of solvation -60.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds