Wall clock time and date at job start Sun Mar 29 2020 22:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31537 * 1 3 3 Si 1.86793 * 120.00412 * 2 1 4 4 H 1.48496 * 109.47348 * 240.00023 * 3 2 1 5 5 H 1.48503 * 109.46936 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47112 * 119.99893 * 3 2 1 7 7 C 1.38857 * 119.99570 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99749 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99757 * 0.27579 * 7 2 1 10 10 C 1.38526 * 119.99618 * 179.72317 * 9 7 2 11 11 C 1.39706 * 120.53654 * 0.02562 * 10 9 7 12 12 C 1.38134 * 118.32108 * 180.02562 * 11 10 9 13 13 C 1.50700 * 120.40318 * 180.02562 * 12 11 10 14 14 C 1.53933 * 113.73774 * 60.87423 * 13 12 11 15 15 N 1.47951 * 86.18232 * 221.92261 * 14 13 12 16 16 C 1.47957 * 90.76537 * 24.68860 * 15 14 13 17 17 N 1.32565 * 119.19409 * 359.97438 * 12 11 10 18 18 C 1.31792 * 121.02943 * 0.02562 * 17 12 11 19 19 N 1.31734 * 121.84120 * 359.71619 * 18 17 12 20 20 H 0.97001 * 119.99211 * 359.97438 * 1 2 3 21 21 H 0.96992 * 120.00287 * 359.72755 * 9 7 2 22 22 H 1.07996 * 120.84262 * 359.97438 * 11 10 9 23 23 H 1.09007 * 112.93808 * 192.58340 * 13 12 11 24 24 H 1.09004 * 113.75720 * 336.24533 * 14 13 12 25 25 H 1.08997 * 113.75701 * 107.60013 * 14 13 12 26 26 H 1.00900 * 110.99857 * 271.79810 * 15 14 13 27 27 H 1.09004 * 113.76394 * 220.99643 * 16 15 14 28 28 H 1.08996 * 113.86300 * 89.64156 * 16 15 14 29 29 H 1.07990 * 119.08106 * 179.97438 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6176 0.0000 4 1 3.1032 1.6963 -1.2124 5 1 1.2845 2.7464 -0.0006 6 1 3.1032 1.6962 1.2125 7 6 2.0096 -1.2026 -0.0005 8 1 3.0895 -1.2026 -0.0001 9 7 1.3248 -2.3884 -0.0068 10 6 2.0173 -3.5881 -0.0131 11 6 3.4143 -3.6012 -0.0127 12 6 4.0582 -4.8233 -0.0197 13 6 5.5636 -4.8922 -0.0189 14 6 6.2130 -4.2430 1.2165 15 7 7.2061 -3.6795 0.2756 16 6 6.2354 -3.7745 -0.8369 17 7 3.3357 -5.9348 -0.0260 18 6 2.0186 -5.8889 -0.0263 19 7 1.3630 -4.7463 -0.0147 20 1 -0.4849 0.8401 0.0004 21 1 0.3548 -2.3883 -0.0068 22 1 3.9767 -2.6792 -0.0078 23 1 5.9434 -5.8890 -0.2435 24 1 5.5874 -3.4909 1.6973 25 1 6.6332 -4.9615 1.9203 26 1 7.9765 -4.3165 0.1387 27 1 6.6734 -4.1187 -1.7739 28 1 5.6157 -2.8862 -0.9585 29 1 1.4612 -6.8138 -0.0320 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155537609.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:28 Heat of formation + Delta-G solvation = 83.304563 kcal Electronic energy + Delta-G solvation = -14428.814224 eV Core-core repulsion = 11966.970129 eV Total energy + Delta-G solvation = -2461.844096 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.20509 -38.70751 -35.76496 -32.70578 -31.78754 -29.53689 -26.75330 -25.85253 -25.28273 -23.12203 -21.56018 -19.83838 -18.22747 -16.90645 -16.54006 -15.91794 -14.86081 -14.31945 -14.09943 -13.88292 -13.69617 -13.27164 -13.16003 -12.36874 -12.28376 -11.76623 -11.62675 -11.06347 -10.96442 -10.78164 -10.66335 -10.52844 -9.51347 -9.28741 -8.76067 -8.49126 -8.05390 -7.44222 -6.77070 -4.02717 2.10195 2.41396 3.08085 3.10057 3.10415 3.87575 4.13567 4.52104 4.71325 4.80664 4.88436 5.21537 5.28015 5.38437 5.53244 5.74386 5.81062 5.92225 6.06788 6.16327 6.25997 6.43399 6.58720 6.78427 7.10551 7.36141 7.40946 7.69541 8.10921 8.57416 9.06151 9.17061 9.58077 10.38304 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.025237 B = 0.009571 C = 0.007174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.237240 B = 2924.854390 C = 3902.302124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.030 3.970 3 Si 0.937 3.063 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.309 4.309 8 H 0.106 0.894 9 N -0.511 5.511 10 C 0.374 3.626 11 C -0.296 4.296 12 C 0.190 3.810 13 C -0.102 4.102 14 C 0.032 3.968 15 N -0.660 5.660 16 C 0.026 3.974 17 N -0.615 5.615 18 C 0.330 3.670 19 N -0.610 5.610 20 H 0.280 0.720 21 H 0.406 0.594 22 H 0.130 0.870 23 H 0.101 0.899 24 H 0.102 0.898 25 H 0.072 0.928 26 H 0.332 0.668 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.635 -4.498 -0.095 9.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.177 4.177 3 Si 0.763 3.237 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.440 4.440 8 H 0.124 0.876 9 N -0.118 5.118 10 C 0.124 3.876 11 C -0.328 4.328 12 C 0.051 3.949 13 C -0.123 4.123 14 C -0.099 4.099 15 N -0.286 5.286 16 C -0.104 4.104 17 N -0.342 5.342 18 C 0.037 3.963 19 N -0.340 5.340 20 H 0.090 0.910 21 H 0.242 0.758 22 H 0.147 0.853 23 H 0.119 0.881 24 H 0.120 0.880 25 H 0.091 0.909 26 H 0.146 0.854 27 H 0.090 0.910 28 H 0.125 0.875 29 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 8.104 -3.943 0.100 9.012 hybrid contribution 0.053 0.493 -0.253 0.557 sum 8.157 -3.449 -0.153 8.857 Atomic orbital electron populations 1.69681 1.06191 1.29303 1.46086 1.25415 0.95783 1.00242 0.96237 0.85798 0.78880 0.79564 0.79486 1.19360 1.20470 1.19327 1.19744 0.93178 0.81977 1.49070 0.87611 1.40803 1.08931 1.01188 1.60833 1.18368 0.88681 0.86215 0.94287 1.21492 0.94200 0.98946 1.18194 1.20637 0.94332 0.88665 0.91270 1.23122 0.91324 1.00272 0.97538 1.23712 0.93791 0.97768 0.94613 1.65102 1.07038 1.50345 1.06124 1.23829 0.93939 0.98315 0.94332 1.68039 1.08071 1.31281 1.26776 1.24049 0.87565 0.94519 0.90133 1.67776 1.41483 0.97988 1.26734 0.90963 0.75834 0.85250 0.88117 0.87962 0.90948 0.85381 0.90968 0.87522 0.81032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.80 13.05 55.49 0.72 -22.07 15 2 C 0.03 0.73 5.50 -17.45 -0.10 0.64 15 3 Si 0.94 19.10 29.55 -169.99 -5.02 14.08 15 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 5 H -0.28 -5.66 7.11 56.52 0.40 -5.25 15 6 H -0.27 -5.40 7.11 56.52 0.40 -4.99 15 7 C -0.31 -7.74 9.56 -15.04 -0.14 -7.88 15 8 H 0.11 2.52 5.73 -52.49 -0.30 2.22 15 9 N -0.51 -12.85 5.43 -10.98 -0.06 -12.91 15 10 C 0.37 8.90 7.68 -154.73 -1.19 7.71 15 11 C -0.30 -6.37 8.03 -39.07 -0.31 -6.68 15 12 C 0.19 3.69 6.23 -82.31 -0.51 3.18 15 13 C -0.10 -1.55 4.35 -90.84 -0.39 -1.95 15 14 C 0.03 0.44 8.37 -2.77 -0.02 0.42 15 15 N -0.66 -8.67 8.55 -117.10 -1.00 -9.67 15 16 C 0.03 0.36 8.29 -2.77 -0.02 0.34 15 17 N -0.62 -12.43 10.37 -10.88 -0.11 -12.54 15 18 C 0.33 6.66 12.28 -92.21 -1.13 5.53 15 19 N -0.61 -13.97 10.47 -13.79 -0.14 -14.11 15 20 H 0.28 6.84 8.31 -40.82 -0.34 6.50 15 21 H 0.41 10.57 8.02 -40.82 -0.33 10.24 15 22 H 0.13 2.71 4.70 -52.49 -0.25 2.46 15 23 H 0.10 1.43 8.14 -51.93 -0.42 1.01 15 24 H 0.10 1.59 7.79 -51.93 -0.40 1.19 15 25 H 0.07 0.87 8.14 -51.93 -0.42 0.44 15 26 H 0.33 3.54 8.89 -39.29 -0.35 3.19 15 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 28 H 0.11 1.67 6.31 -51.93 -0.33 1.34 15 29 H 0.17 2.80 8.06 -52.49 -0.42 2.37 15 LS Contribution 251.26 15.07 3.79 3.79 Total: -1.00 -27.52 251.26 -8.44 -35.96 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -2.78 Total: 16.19 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -3.83 Total: 1.29 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: -0.59 Total: -71.31 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.52 -8.44 -35.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537609.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.264 kcal (2) G-P(sol) polarization free energy of solvation -27.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds