Wall clock time and date at job start Sun Mar 29 2020 22:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31537 * 1 3 3 Si 1.86793 * 120.00412 * 2 1 4 4 H 1.48496 * 109.47348 * 240.00023 * 3 2 1 5 5 H 1.48503 * 109.46936 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47112 * 119.99893 * 3 2 1 7 7 C 1.38857 * 119.99570 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99749 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99757 * 0.27579 * 7 2 1 10 10 C 1.38526 * 119.99618 * 179.72317 * 9 7 2 11 11 C 1.39706 * 120.53654 * 0.02562 * 10 9 7 12 12 C 1.38134 * 118.32108 * 180.02562 * 11 10 9 13 13 C 1.50700 * 120.40318 * 180.02562 * 12 11 10 14 14 C 1.53933 * 113.73774 * 60.87423 * 13 12 11 15 15 N 1.47951 * 86.18232 * 221.92261 * 14 13 12 16 16 C 1.47957 * 90.76537 * 24.68860 * 15 14 13 17 17 N 1.32565 * 119.19409 * 359.97438 * 12 11 10 18 18 C 1.31792 * 121.02943 * 0.02562 * 17 12 11 19 19 N 1.31734 * 121.84120 * 359.71619 * 18 17 12 20 20 H 0.97001 * 119.99211 * 359.97438 * 1 2 3 21 21 H 0.96992 * 120.00287 * 359.72755 * 9 7 2 22 22 H 1.07996 * 120.84262 * 359.97438 * 11 10 9 23 23 H 1.09007 * 112.93808 * 192.58340 * 13 12 11 24 24 H 1.09004 * 113.75720 * 336.24533 * 14 13 12 25 25 H 1.08997 * 113.75701 * 107.60013 * 14 13 12 26 26 H 1.00900 * 110.99857 * 271.79810 * 15 14 13 27 27 H 1.09004 * 113.76394 * 220.99643 * 16 15 14 28 28 H 1.08996 * 113.86300 * 89.64156 * 16 15 14 29 29 H 1.07990 * 119.08106 * 179.97438 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6176 0.0000 4 1 3.1032 1.6963 -1.2124 5 1 1.2845 2.7464 -0.0006 6 1 3.1032 1.6962 1.2125 7 6 2.0096 -1.2026 -0.0005 8 1 3.0895 -1.2026 -0.0001 9 7 1.3248 -2.3884 -0.0068 10 6 2.0173 -3.5881 -0.0131 11 6 3.4143 -3.6012 -0.0127 12 6 4.0582 -4.8233 -0.0197 13 6 5.5636 -4.8922 -0.0189 14 6 6.2130 -4.2430 1.2165 15 7 7.2061 -3.6795 0.2756 16 6 6.2354 -3.7745 -0.8369 17 7 3.3357 -5.9348 -0.0260 18 6 2.0186 -5.8889 -0.0263 19 7 1.3630 -4.7463 -0.0147 20 1 -0.4849 0.8401 0.0004 21 1 0.3548 -2.3883 -0.0068 22 1 3.9767 -2.6792 -0.0078 23 1 5.9434 -5.8890 -0.2435 24 1 5.5874 -3.4909 1.6973 25 1 6.6332 -4.9615 1.9203 26 1 7.9765 -4.3165 0.1387 27 1 6.6734 -4.1187 -1.7739 28 1 5.6157 -2.8862 -0.9585 29 1 1.4612 -6.8138 -0.0320 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155537609.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:28 Heat of formation + Delta-G solvation = 63.876201 kcal Electronic energy + Delta-G solvation = -14429.656701 eV Core-core repulsion = 11966.970129 eV Total energy + Delta-G solvation = -2462.686573 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.73329 -40.04806 -37.54801 -34.46122 -33.48276 -31.24592 -28.11571 -27.18750 -26.88703 -24.72536 -23.17657 -21.15041 -20.03200 -18.56109 -17.90198 -17.30990 -16.54712 -15.98056 -15.68821 -15.56257 -15.29649 -14.70822 -14.54749 -13.59295 -13.52912 -13.47020 -13.28489 -12.59445 -12.55384 -12.21273 -12.14936 -11.99282 -11.22547 -11.01712 -10.43464 -9.88575 -9.46540 -9.24426 -8.60526 -5.94477 0.45932 0.68931 1.41781 1.50711 1.53228 2.19173 2.84601 2.94736 3.07088 3.28890 3.41501 3.76780 3.83804 4.03027 4.31529 4.47406 4.62107 4.69019 4.71447 4.81226 4.91821 4.97536 5.14052 5.21446 5.28788 5.62178 5.97470 6.34970 6.47289 6.72421 7.24918 7.34208 7.80832 8.56853 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.025237 B = 0.009571 C = 0.007174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.237240 B = 2924.854390 C = 3902.302124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.016 4.016 3 Si 1.004 2.996 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.328 4.328 8 H 0.111 0.889 9 N -0.535 5.535 10 C 0.363 3.637 11 C -0.310 4.310 12 C 0.198 3.802 13 C -0.102 4.102 14 C 0.036 3.964 15 N -0.660 5.660 16 C 0.029 3.971 17 N -0.611 5.611 18 C 0.326 3.674 19 N -0.632 5.632 20 H 0.281 0.719 21 H 0.394 0.606 22 H 0.130 0.870 23 H 0.119 0.881 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.351 0.649 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.887 -5.390 -0.152 12.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.218 4.218 3 Si 0.826 3.174 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.458 4.458 8 H 0.129 0.871 9 N -0.143 5.143 10 C 0.115 3.885 11 C -0.341 4.341 12 C 0.058 3.942 13 C -0.122 4.122 14 C -0.094 4.094 15 N -0.288 5.288 16 C -0.101 4.101 17 N -0.336 5.336 18 C 0.035 3.965 19 N -0.362 5.362 20 H 0.091 0.909 21 H 0.228 0.772 22 H 0.148 0.852 23 H 0.137 0.863 24 H 0.099 0.901 25 H 0.115 0.885 26 H 0.167 0.833 27 H 0.114 0.886 28 H 0.104 0.896 29 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 10.397 -4.887 0.042 11.489 hybrid contribution -0.569 0.505 -0.234 0.796 sum 9.828 -4.382 -0.192 10.762 Atomic orbital electron populations 1.69788 1.07645 1.30002 1.48018 1.26328 0.96516 1.03243 0.95705 0.84806 0.77602 0.75301 0.79714 1.18598 1.20262 1.18709 1.20040 0.93557 0.82454 1.49757 0.87092 1.40839 1.08324 1.01786 1.63323 1.18818 0.89779 0.86325 0.93536 1.21600 0.93307 1.00078 1.19146 1.21320 0.96584 0.87598 0.88738 1.23363 0.88070 1.01798 0.99012 1.23629 0.93643 0.97502 0.94640 1.65023 1.07179 1.51159 1.05409 1.23751 0.93855 0.96908 0.95579 1.68206 1.08105 1.31369 1.25928 1.24881 0.88055 0.95042 0.88563 1.67840 1.42324 0.98470 1.27551 0.90944 0.77159 0.85200 0.86257 0.90096 0.88481 0.83307 0.88599 0.89627 0.77237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.18 13.05 21.65 0.28 -48.90 15 2 C -0.02 -0.81 5.50 84.89 0.47 -0.35 15 3 Si 1.00 39.43 29.55 68.60 2.03 41.46 15 4 H -0.26 -9.86 7.11 99.48 0.71 -9.15 15 5 H -0.28 -10.69 7.11 99.48 0.71 -9.98 15 6 H -0.26 -9.95 7.11 99.48 0.71 -9.25 15 7 C -0.33 -16.88 9.56 84.04 0.80 -16.08 15 8 H 0.11 5.40 5.73 -2.91 -0.02 5.38 15 9 N -0.53 -27.85 5.43 -188.65 -1.02 -28.87 15 10 C 0.36 17.53 7.68 133.17 1.02 18.55 15 11 C -0.31 -13.27 8.03 22.60 0.18 -13.09 15 12 C 0.20 7.34 6.23 42.42 0.26 7.61 15 13 C -0.10 -2.81 4.35 -10.89 -0.05 -2.86 15 14 C 0.04 0.92 8.37 86.41 0.72 1.64 15 15 N -0.66 -15.31 8.55 -524.39 -4.49 -19.80 15 16 C 0.03 0.75 8.29 86.41 0.72 1.46 15 17 N -0.61 -23.30 10.37 -188.33 -1.95 -25.25 15 18 C 0.33 12.59 12.28 180.90 2.22 14.82 15 19 N -0.63 -28.84 10.47 -197.55 -2.07 -30.91 15 20 H 0.28 14.12 8.31 -92.71 -0.77 13.35 15 21 H 0.39 21.57 8.02 -92.71 -0.74 20.83 15 22 H 0.13 5.49 4.70 -2.91 -0.01 5.48 15 23 H 0.12 2.90 8.14 -2.38 -0.02 2.88 15 24 H 0.08 2.41 7.79 -2.38 -0.02 2.40 15 25 H 0.10 1.97 8.14 -2.39 -0.02 1.95 15 26 H 0.35 6.09 8.89 -89.69 -0.80 5.29 15 27 H 0.10 1.98 8.14 -2.38 -0.02 1.96 15 28 H 0.09 2.58 6.31 -2.39 -0.02 2.56 15 29 H 0.21 6.24 8.06 -2.92 -0.02 6.22 15 Total: -1.00 -59.43 251.26 -1.21 -60.64 By element: Atomic # 1 Polarization: 40.26 SS G_CDS: -0.34 Total: 39.93 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 6.35 Total: 11.71 kcal Atomic # 7 Polarization: -144.48 SS G_CDS: -9.25 Total: -153.73 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -59.43 -1.21 -60.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537609.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.515 kcal (2) G-P(sol) polarization free energy of solvation -59.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds