Wall clock time and date at job start Sun Mar 29 2020 21:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31543 * 1 3 3 Si 1.86795 * 120.00215 * 2 1 4 4 H 1.48498 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47160 * 300.00193 * 3 2 1 6 6 H 1.48504 * 109.46896 * 60.00477 * 3 2 1 7 7 C 1.38850 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00197 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99828 * 359.97438 * 7 2 1 10 10 C 1.38576 * 120.00000 * 180.02562 * 9 7 2 11 11 N 1.33506 * 120.70020 * 359.97438 * 10 9 7 12 12 C 1.31707 * 120.48677 * 179.97438 * 11 10 9 13 13 N 1.31700 * 122.41153 * 0.02562 * 12 11 10 14 14 C 1.33479 * 120.91870 * 359.97438 * 13 12 11 15 15 C 1.38259 * 120.60758 * 179.91232 * 10 9 7 16 16 C 1.50832 * 134.29142 * 0.21455 * 15 10 9 17 17 C 1.51507 * 103.99528 * 179.84314 * 16 15 10 18 18 O 1.21268 * 126.48938 * 179.97438 * 17 16 15 19 19 N 1.34455 * 107.02605 * 359.92968 * 17 16 15 20 20 H 0.96996 * 119.99664 * 0.02562 * 1 2 3 21 21 H 0.97004 * 119.99789 * 0.02562 * 9 7 2 22 22 H 1.07994 * 118.79178 * 180.02562 * 12 11 10 23 23 H 1.09002 * 110.54947 * 61.17416 * 16 15 10 24 24 H 1.08997 * 110.54791 * 298.50885 * 16 15 10 25 25 H 0.97000 * 123.79856 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7094 1.3463 -0.0006 5 1 1.8907 2.3964 -1.2124 6 1 1.8908 2.3963 1.2126 7 6 2.0097 -1.2025 -0.0005 8 1 3.0897 -1.2025 -0.0001 9 7 1.3249 -2.3884 -0.0005 10 6 2.0177 -3.5885 -0.0005 11 7 3.3527 -3.6049 -0.0011 12 6 4.0069 -4.7480 -0.0005 13 7 3.3926 -5.9130 0.0000 14 6 2.0598 -5.9855 0.0005 15 6 1.3391 -4.7931 0.0013 16 6 -0.1185 -5.1809 -0.0005 17 6 -0.0947 -6.6958 -0.0006 18 8 -1.0581 -7.4322 -0.0014 19 7 1.1970 -7.0692 -0.0006 20 1 -0.4849 0.8400 -0.0004 21 1 0.3549 -2.3883 -0.0005 22 1 5.0867 -4.7293 -0.0006 23 1 -0.6130 -4.8060 -0.8967 24 1 -0.6152 -4.8061 0.8944 25 1 1.4915 -7.9934 -0.0009 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163177537.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:30 Heat of formation + Delta-G solvation = 7.465483 kcal Electronic energy + Delta-G solvation = -14143.823289 eV Core-core repulsion = 11542.857469 eV Total energy + Delta-G solvation = -2600.965819 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.65711 -40.39943 -37.83967 -37.09455 -34.43010 -32.33391 -32.28525 -29.06415 -26.83421 -23.92856 -23.82245 -22.19291 -20.25358 -19.52383 -18.33207 -17.64819 -17.25882 -16.35319 -16.30820 -15.60219 -15.33613 -15.07702 -14.80670 -14.59399 -13.80251 -13.46283 -13.46043 -12.77975 -12.50999 -12.07703 -12.04633 -11.70471 -11.19057 -10.90063 -9.84015 -9.83921 -9.21073 -8.55708 -5.84961 0.19575 0.59004 1.38335 1.46848 1.53780 1.60337 1.66853 2.26036 2.91513 2.94586 3.06060 3.39315 3.55174 3.77392 4.10997 4.38328 4.47555 4.75179 4.85046 5.25952 5.41790 5.46113 5.65874 5.99587 6.32629 6.73912 6.85597 7.26312 7.32801 7.83552 8.60615 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.040593 B = 0.008110 C = 0.006784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.602034 B = 3451.863228 C = 4126.254818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.018 4.018 3 Si 1.000 3.000 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.309 4.309 8 H 0.109 0.891 9 N -0.523 5.523 10 C 0.405 3.595 11 N -0.608 5.608 12 C 0.362 3.638 13 N -0.621 5.621 14 C 0.407 3.593 15 C -0.361 4.361 16 C -0.085 4.085 17 C 0.549 3.451 18 O -0.530 6.530 19 N -0.628 5.628 20 H 0.280 0.720 21 H 0.407 0.593 22 H 0.225 0.775 23 H 0.123 0.877 24 H 0.123 0.877 25 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.204 -5.776 0.000 6.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.220 4.220 3 Si 0.823 3.177 4 H -0.184 1.184 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.440 4.440 8 H 0.127 0.873 9 N -0.130 5.130 10 C 0.157 3.843 11 N -0.338 5.338 12 C 0.070 3.930 13 N -0.353 5.353 14 C 0.172 3.828 15 C -0.379 4.379 16 C -0.125 4.125 17 C 0.338 3.662 18 O -0.406 6.406 19 N -0.274 5.274 20 H 0.090 0.910 21 H 0.243 0.757 22 H 0.241 0.759 23 H 0.141 0.859 24 H 0.141 0.859 25 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 3.338 -5.616 -0.001 6.533 hybrid contribution -0.891 0.326 0.001 0.948 sum 2.447 -5.290 0.000 5.829 Atomic orbital electron populations 1.69732 1.07243 1.29765 1.48755 1.26224 0.96507 1.02997 0.96240 0.84737 0.78643 0.76426 0.77868 1.18397 1.20223 1.20214 1.20162 0.93861 0.82653 1.47364 0.87309 1.40945 1.08143 1.02191 1.61766 1.17568 0.88484 0.84770 0.93457 1.68264 1.06605 1.31537 1.27365 1.24934 1.01089 0.80301 0.86700 1.67621 1.06389 1.30972 1.30284 1.18200 0.88990 0.85726 0.89904 1.20024 0.97046 0.93308 1.27492 1.20628 0.94025 0.91496 1.06341 1.20591 0.81095 0.91576 0.72970 1.90777 1.37456 1.61558 1.50794 1.43158 1.05759 1.08924 1.69528 0.91049 0.75708 0.75901 0.85889 0.85888 0.73496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.38 13.05 21.65 0.28 -46.09 15 2 C -0.02 -0.90 5.50 84.88 0.47 -0.43 15 3 Si 1.00 39.02 29.55 68.60 2.03 41.05 15 4 H -0.26 -9.88 7.11 99.48 0.71 -9.17 15 5 H -0.28 -10.60 7.11 99.48 0.71 -9.89 15 6 H -0.28 -10.59 7.11 99.48 0.71 -9.89 15 7 C -0.31 -15.44 9.72 84.04 0.82 -14.62 15 8 H 0.11 5.50 7.12 -2.91 -0.02 5.48 15 9 N -0.52 -24.53 5.41 -189.41 -1.03 -25.56 15 10 C 0.40 17.44 7.43 132.66 0.99 18.43 15 11 N -0.61 -25.35 9.30 -198.41 -1.85 -27.20 15 12 C 0.36 12.41 12.24 180.94 2.22 14.62 15 13 N -0.62 -21.39 10.48 -197.64 -2.07 -23.46 15 14 C 0.41 14.01 8.32 132.95 1.11 15.12 15 15 C -0.36 -13.45 6.32 -19.56 -0.12 -13.57 15 16 C -0.08 -2.65 6.69 29.40 0.20 -2.45 15 17 C 0.55 17.03 8.72 87.96 0.77 17.79 15 18 O -0.53 -18.60 18.03 -2.99 -0.05 -18.66 15 19 N -0.63 -18.14 5.83 -307.74 -1.80 -19.93 15 20 H 0.28 13.33 8.31 -92.71 -0.77 12.55 15 21 H 0.41 18.89 7.74 -92.71 -0.72 18.17 15 22 H 0.22 5.61 8.06 -2.91 -0.02 5.58 15 23 H 0.12 3.59 8.14 -2.39 -0.02 3.57 15 24 H 0.12 3.59 8.14 -2.39 -0.02 3.57 15 25 H 0.42 10.02 8.96 -92.71 -0.83 9.19 15 Total: -1.00 -57.46 234.40 1.67 -55.79 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: -0.28 Total: 29.17 kcal Atomic # 6 Polarization: 28.46 SS G_CDS: 6.43 Total: 34.89 kcal Atomic # 7 Polarization: -135.78 SS G_CDS: -6.45 Total: -142.24 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.05 Total: -18.66 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -57.46 1.67 -55.79 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163177537.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.255 kcal (2) G-P(sol) polarization free energy of solvation -57.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds