Wall clock time and date at job start Sun Mar 29 2020 22:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35659 * 116.99604 * 2 1 4 4 C 1.38682 * 120.15529 * 0.02562 * 3 2 1 5 5 C 1.38070 * 120.09286 * 180.02562 * 4 3 2 6 6 C 1.38561 * 120.40115 * 359.95398 * 5 4 3 7 7 C 1.37775 * 120.30455 * 0.02562 * 6 5 4 8 8 C 1.39768 * 119.90182 * 0.02562 * 7 6 5 9 9 C 1.47427 * 120.19778 * 179.97438 * 8 7 6 10 10 O 1.21624 * 119.99991 * 179.97438 * 9 8 7 11 11 N 1.34780 * 120.00032 * 359.97438 * 9 8 7 12 12 C 1.36907 * 119.99967 * 180.02562 * 11 9 8 13 13 H 1.08001 * 120.00112 * 359.97438 * 12 11 9 14 14 C 1.39021 * 119.99997 * 180.02562 * 12 11 9 15 15 N 1.31383 * 119.99976 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00333 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46835 * 89.99574 * 16 14 12 18 18 H 1.48495 * 109.47110 * 209.99894 * 16 14 12 19 19 H 1.48499 * 109.46940 * 330.00169 * 16 14 12 20 20 H 1.08999 * 109.47727 * 59.99953 * 1 2 3 21 21 H 1.09003 * 109.47154 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47558 * 299.99584 * 1 2 3 23 23 H 1.08003 * 119.95712 * 359.97438 * 4 3 2 24 24 H 1.08003 * 119.80149 * 179.97438 * 5 4 3 25 25 H 1.07998 * 119.84832 * 180.02562 * 6 5 4 26 26 H 1.08004 * 120.05199 * 179.72125 * 7 6 5 27 27 H 0.97001 * 119.99879 * 0.02562 * 11 9 8 28 28 H 0.97000 * 120.00526 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2926 2.3739 0.0005 5 6 1.9207 3.6034 0.0000 6 6 3.3039 3.6842 -0.0001 7 6 4.0673 2.5373 -0.0002 8 6 3.4447 1.2859 -0.0008 9 6 4.2552 0.0544 -0.0015 10 8 3.7097 -1.0326 -0.0015 11 7 5.6007 0.1332 -0.0021 12 6 6.3534 -1.0104 -0.0033 13 1 5.8690 -1.9757 -0.0033 14 6 7.7412 -0.9291 -0.0034 15 7 8.3305 0.2451 -0.0029 16 14 8.7683 -2.4895 -0.0043 17 1 9.0401 -2.9022 -1.4046 18 1 10.0532 -2.2366 0.6957 19 1 8.0277 -3.5699 0.6953 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 0.2139 2.3194 0.0005 24 1 1.3302 4.5078 0.0000 25 1 3.7859 4.6507 -0.0001 26 1 5.1452 2.6050 -0.0049 27 1 6.0358 1.0002 -0.0017 28 1 9.2988 0.3019 -0.0033 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037714218.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:25 Heat of formation + Delta-G solvation = -46.968480 kcal Electronic energy + Delta-G solvation = -14508.346604 eV Core-core repulsion = 11910.842032 eV Total energy + Delta-G solvation = -2597.504572 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.87040 -37.77144 -36.71869 -33.91158 -31.52465 -30.48388 -29.70092 -27.02449 -25.14866 -22.91651 -21.59803 -19.54225 -18.26849 -17.40573 -16.24165 -15.64512 -15.38168 -14.75552 -14.28152 -14.13935 -13.87919 -13.38631 -13.10157 -12.49399 -12.11365 -11.84769 -11.55231 -11.23198 -11.08594 -10.80053 -10.77890 -10.37957 -10.19329 -9.52874 -8.61557 -8.29628 -7.97065 -7.79880 -6.46028 -3.78863 1.40037 1.77120 3.19666 3.26461 3.33062 3.68513 3.75811 4.16516 4.56678 4.88324 5.05944 5.21650 5.29435 5.33726 5.39568 5.48054 5.67512 5.69510 5.90937 6.08656 6.31716 6.61804 6.66673 6.82741 7.09326 7.52406 7.80880 8.07956 8.62929 9.17485 9.54224 10.11609 10.71699 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.040542 B = 0.007754 C = 0.006532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.469323 B = 3610.187758 C = 4285.513716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.274 6.274 3 C 0.165 3.835 4 C -0.223 4.223 5 C -0.082 4.082 6 C -0.165 4.165 7 C -0.066 4.066 8 C -0.131 4.131 9 C 0.474 3.526 10 O -0.577 6.577 11 N -0.552 5.552 12 C -0.290 4.290 13 H 0.106 0.894 14 C 0.021 3.979 15 N -0.896 5.896 16 Si 0.933 3.067 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.268 1.268 20 H 0.049 0.951 21 H 0.096 0.904 22 H 0.049 0.951 23 H 0.126 0.874 24 H 0.120 0.880 25 H 0.122 0.878 26 H 0.133 0.867 27 H 0.392 0.608 28 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.322 6.829 0.012 12.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.185 6.185 3 C 0.116 3.884 4 C -0.242 4.242 5 C -0.100 4.100 6 C -0.183 4.183 7 C -0.085 4.085 8 C -0.136 4.136 9 C 0.262 3.738 10 O -0.462 6.462 11 N -0.188 5.188 12 C -0.420 4.420 13 H 0.124 0.876 14 C -0.181 4.181 15 N -0.536 5.536 16 Si 0.760 3.240 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.193 1.193 20 H 0.068 0.932 21 H 0.115 0.885 22 H 0.068 0.932 23 H 0.143 0.857 24 H 0.138 0.862 25 H 0.140 0.860 26 H 0.151 0.849 27 H 0.227 0.773 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.367 5.902 0.018 11.930 hybrid contribution 0.582 0.103 -0.012 0.591 sum -9.785 6.005 0.007 11.481 Atomic orbital electron populations 1.23061 0.80126 1.03641 1.00490 1.86472 1.19455 1.25523 1.87020 1.19075 0.91262 0.84481 0.93547 1.21109 0.99631 0.92300 1.11116 1.20896 0.94629 0.96582 0.97939 1.20908 0.93734 0.98223 1.05455 1.21311 1.00267 0.90942 0.96016 1.19865 0.90972 0.95130 1.07589 1.17536 0.82590 0.87951 0.85709 1.90646 1.71357 1.28278 1.55940 1.41870 1.04246 1.09658 1.63041 1.19805 0.88040 0.87803 1.46373 0.87591 1.25329 0.97053 0.98518 0.97244 1.69596 1.10990 1.23509 1.49527 0.85801 0.78683 0.81049 0.78472 1.20299 1.20841 1.19271 0.93206 0.88509 0.93199 0.85658 0.86221 0.85963 0.84876 0.77333 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 101.05 0.99 1.29 15 2 O -0.27 -5.49 8.57 -40.56 -0.35 -5.84 15 3 C 0.16 3.20 6.70 -38.68 -0.26 2.94 15 4 C -0.22 -3.36 9.03 -39.48 -0.36 -3.72 15 5 C -0.08 -1.11 10.03 -39.52 -0.40 -1.51 15 6 C -0.16 -2.43 10.02 -39.63 -0.40 -2.83 15 7 C -0.07 -1.19 9.54 -39.18 -0.37 -1.56 15 8 C -0.13 -2.83 5.89 -104.85 -0.62 -3.45 15 9 C 0.47 12.50 7.71 -12.52 -0.10 12.40 15 10 O -0.58 -17.08 14.73 -16.62 -0.24 -17.32 15 11 N -0.55 -14.81 5.23 -11.95 -0.06 -14.87 15 12 C -0.29 -8.32 9.68 -15.00 -0.15 -8.46 15 13 H 0.11 3.16 7.15 -52.49 -0.38 2.79 15 14 C 0.02 0.56 5.50 -17.45 -0.10 0.47 15 15 N -0.90 -24.42 13.05 55.50 0.72 -23.69 15 16 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 15 17 H -0.28 -6.20 7.11 56.52 0.40 -5.79 15 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 20 H 0.05 0.56 7.66 -51.93 -0.40 0.16 15 21 H 0.10 1.12 8.14 -51.93 -0.42 0.70 15 22 H 0.05 0.56 7.66 -51.93 -0.40 0.16 15 23 H 0.13 1.51 6.30 -52.48 -0.33 1.17 15 24 H 0.12 1.22 8.06 -52.48 -0.42 0.80 15 25 H 0.12 1.44 8.06 -52.49 -0.42 1.02 15 26 H 0.13 2.34 6.40 -52.48 -0.34 2.01 15 27 H 0.39 9.89 5.92 -40.82 -0.24 9.65 15 28 H 0.27 7.00 8.31 -40.82 -0.34 6.66 15 LS Contribution 250.03 15.07 3.77 3.77 Total: -1.00 -33.04 250.03 -5.42 -38.45 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -2.48 Total: 7.82 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -1.75 Total: -4.44 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.66 Total: -38.56 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.59 Total: -23.16 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -33.04 -5.42 -38.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037714218.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.517 kcal (2) G-P(sol) polarization free energy of solvation -33.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds