Wall clock time and date at job start Sun Mar 29 2020 21:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47262 * 2 1 4 4 C 1.36929 * 119.99803 * 263.78806 * 3 2 1 5 5 H 1.08001 * 120.00035 * 142.61565 * 4 3 2 6 6 C 1.38812 * 120.00260 * 322.61532 * 4 3 2 7 7 N 1.31618 * 120.00275 * 157.39377 * 6 4 3 8 8 Si 1.86797 * 119.99929 * 337.38719 * 6 4 3 9 9 H 1.48497 * 109.47029 * 95.71327 * 8 6 4 10 10 H 1.48503 * 109.47139 * 215.71982 * 8 6 4 11 11 H 1.48502 * 109.47201 * 335.71893 * 8 6 4 12 12 C 1.46497 * 119.99766 * 83.78576 * 3 2 1 13 13 C 1.53000 * 109.47129 * 90.00154 * 12 3 2 14 14 C 1.50703 * 109.47315 * 179.97438 * 13 12 3 15 15 C 1.38228 * 119.61510 * 124.99675 * 14 13 12 16 16 C 1.38624 * 119.16061 * 179.97438 * 15 14 13 17 17 C 1.38676 * 118.42121 * 0.02562 * 16 15 14 18 18 C 1.38183 * 119.16180 * 359.97438 * 17 16 15 19 19 N 1.31852 * 119.61879 * 304.73378 * 14 13 12 20 20 H 1.09000 * 109.47378 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47094 * 299.99685 * 1 2 3 22 22 H 1.08999 * 109.47090 * 59.99781 * 1 2 3 23 23 H 1.08998 * 109.47315 * 239.99813 * 2 1 3 24 24 H 1.09003 * 109.47133 * 119.99714 * 2 1 3 25 25 H 0.96999 * 120.00544 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.47528 * 330.00450 * 12 3 2 27 27 H 1.08997 * 109.47062 * 209.99982 * 12 3 2 28 28 H 1.09007 * 109.47083 * 60.00252 * 13 12 3 29 29 H 1.08995 * 109.47372 * 300.00250 * 13 12 3 30 30 H 1.08005 * 120.42132 * 359.96771 * 15 14 13 31 31 H 1.08004 * 120.79293 * 180.02562 * 16 15 14 32 32 H 1.07998 * 120.41740 * 180.02562 * 17 16 15 33 33 H 1.08001 * 119.61533 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3675 1.9839 -1.1789 5 1 2.1496 3.0300 -1.3359 6 6 3.0016 1.2504 -2.1723 7 7 2.9450 1.6518 -3.4245 8 14 3.9353 -0.3064 -1.7319 9 1 3.0563 -1.4855 -1.9368 10 1 5.1348 -0.4263 -2.5992 11 1 4.3573 -0.2449 -0.3094 12 6 2.1330 2.1175 1.2613 13 6 3.5250 1.8959 1.8565 14 6 3.6432 2.6538 3.1537 15 6 4.0082 1.9831 4.3059 16 6 4.1146 2.6897 5.4938 17 6 3.8482 4.0505 5.4785 18 6 3.4886 4.6529 4.2880 19 7 3.4023 3.9500 3.1753 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.3884 1.1395 -4.1186 26 1 1.3776 1.7598 1.9609 27 1 1.9822 3.1810 1.0761 28 1 4.2805 2.2537 1.1569 29 1 3.6758 0.8324 2.0416 30 1 4.2079 0.9220 4.2810 31 1 4.3983 2.1922 6.4095 32 1 3.9217 4.6323 6.3854 33 1 3.2791 5.7122 4.2677 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044411835.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:26 Heat of formation + Delta-G solvation = 51.189549 kcal Electronic energy + Delta-G solvation = -14655.636761 eV Core-core repulsion = 12295.940397 eV Total energy + Delta-G solvation = -2359.696364 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.98042 -36.42016 -33.15449 -32.15498 -31.61936 -29.92522 -27.85129 -24.47416 -23.40169 -22.93841 -21.57164 -19.81145 -16.79360 -16.51181 -15.99329 -15.35296 -15.15805 -14.48101 -13.90352 -13.36001 -13.17135 -13.00943 -12.81066 -12.39419 -11.95373 -11.72111 -11.42083 -11.31148 -11.02545 -10.75582 -10.35422 -9.99997 -9.73451 -9.68316 -9.48555 -9.13212 -8.75559 -8.47224 -6.78442 -5.94365 -3.33920 1.27437 1.42347 3.34133 3.49245 3.53751 3.98305 4.53635 4.57718 4.82931 4.91747 5.15800 5.18639 5.27808 5.41989 5.75983 5.80334 5.94651 5.97936 6.09052 6.23505 6.26970 6.33405 6.38890 6.43384 6.55360 6.81814 6.84371 6.89392 7.01511 7.14275 8.12072 8.25847 8.45551 9.05701 9.77246 10.18539 11.21596 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.035779 B = 0.007434 C = 0.007253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.398762 B = 3765.411549 C = 3859.397645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.130 3.870 3 N -0.605 5.605 4 C -0.262 4.262 5 H 0.080 0.920 6 C 0.034 3.966 7 N -0.901 5.901 8 Si 0.875 3.125 9 H -0.287 1.287 10 H -0.302 1.302 11 H -0.268 1.268 12 C 0.163 3.837 13 C -0.097 4.097 14 C 0.150 3.850 15 C -0.179 4.179 16 C -0.076 4.076 17 C -0.195 4.195 18 C 0.102 3.898 19 N -0.477 5.477 20 H 0.038 0.962 21 H 0.042 0.958 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.032 0.968 25 H 0.262 0.738 26 H 0.035 0.965 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.029 0.056 16.604 16.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.004 3.996 3 N -0.327 5.327 4 C -0.391 4.391 5 H 0.097 0.903 6 C -0.166 4.166 7 N -0.542 5.542 8 Si 0.706 3.294 9 H -0.216 1.216 10 H -0.230 1.230 11 H -0.192 1.192 12 C 0.036 3.964 13 C -0.138 4.138 14 C 0.012 3.988 15 C -0.199 4.199 16 C -0.102 4.102 17 C -0.215 4.215 18 C -0.056 4.056 19 N -0.187 5.187 20 H 0.057 0.943 21 H 0.061 0.939 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.835 0.454 15.626 15.655 hybrid contribution 0.941 -1.363 1.039 1.955 sum 1.776 -0.909 16.665 16.784 Atomic orbital electron populations 1.22245 0.99064 0.99342 1.01637 1.21132 0.92612 0.86853 0.98970 1.44246 1.74258 1.11241 1.02948 1.18829 1.32948 0.97174 0.90165 0.90255 1.25488 0.97886 0.97946 0.95317 1.69876 1.44314 1.40716 0.99335 0.86942 0.79970 0.83915 0.78603 1.21552 1.23049 1.19245 1.20814 0.91303 0.97383 0.86871 1.21400 1.03464 0.97555 0.91336 1.21686 0.91389 0.89857 0.95843 1.22045 1.02999 1.01409 0.93486 1.21516 0.96333 0.94325 0.98051 1.22034 1.03904 0.95767 0.99785 1.22788 0.94756 1.00041 0.87983 1.67596 1.13895 1.07748 1.29436 0.94327 0.93895 0.92230 0.92516 0.94935 0.92804 0.94671 0.91779 0.89415 0.91495 0.85157 0.85402 0.85391 0.83110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 10.23 37.16 0.38 -2.79 16 2 C 0.13 2.86 5.01 -4.04 -0.02 2.84 16 3 N -0.61 -14.58 2.08 -173.24 -0.36 -14.94 16 4 C -0.26 -7.43 9.91 -15.06 -0.15 -7.58 16 5 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 6 C 0.03 0.98 5.26 -17.43 -0.09 0.89 16 7 N -0.90 -27.79 13.97 55.49 0.78 -27.02 16 8 Si 0.88 22.28 25.05 -169.99 -4.26 18.02 16 9 H -0.29 -7.13 6.69 56.52 0.38 -6.76 16 10 H -0.30 -7.84 7.11 56.52 0.40 -7.43 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 12 C 0.16 3.39 5.55 -4.04 -0.02 3.37 16 13 C -0.10 -1.84 5.94 -27.88 -0.17 -2.01 16 14 C 0.15 2.51 6.17 -82.59 -0.51 2.00 16 15 C -0.18 -2.46 9.71 -39.44 -0.38 -2.84 16 16 C -0.08 -0.87 10.18 -39.28 -0.40 -1.27 16 17 C -0.19 -2.18 10.11 -39.44 -0.40 -2.58 16 18 C 0.10 1.35 11.18 -17.55 -0.20 1.16 16 19 N -0.48 -8.10 9.89 -9.47 -0.09 -8.19 16 20 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 22 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 23 H 0.06 1.37 3.60 -51.93 -0.19 1.18 16 24 H 0.03 0.64 8.12 -51.93 -0.42 0.22 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.03 0.67 8.05 -51.93 -0.42 0.25 16 27 H 0.06 1.42 7.85 -51.93 -0.41 1.01 16 28 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 29 H 0.07 1.21 7.87 -51.93 -0.41 0.80 16 30 H 0.13 1.55 7.95 -52.48 -0.42 1.14 16 31 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.15 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 277.67 15.07 4.18 4.18 Total: -1.00 -31.38 277.67 -6.51 -37.89 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -4.80 Total: -1.15 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -1.96 Total: -8.80 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.32 Total: -50.15 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.26 Total: 18.02 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.38 -6.51 -37.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044411835.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.084 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds